RNA–Protein interactions for RNA: ENST00000513957.1

NEDD4-210, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 591 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-210ENST00000513957 DIEXFQ68CQ4 756 aaKnown RBP10.65□□□□□ -0.7
NEDD4-210ENST00000513957 CD2APQ9Y5K6 639 aa10.65□□□□□ -0.7
NEDD4-210ENST00000513957 USP16Q9Y5T5 823 aa10.65□□□□□ -0.7
NEDD4-210ENST00000513957 BRCA1P38398 1863 aaKnown RBP10.65□□□□□ -0.7
NEDD4-210ENST00000513957 DLEC1Q9Y238 1755 aa10.65□□□□□ -0.71
NEDD4-210ENST00000513957 CANXP27824 592 aaKnown RBP10.64□□□□□ -0.71
NEDD4-210ENST00000513957 WWC1Q8IX03 1113 aa10.64□□□□□ -0.71
NEDD4-210ENST00000513957 MIS18AQ9NYP9 233 aa10.64□□□□□ -0.71
NEDD4-210ENST00000513957 ZNF652Q9Y2D9 606 aa10.64□□□□□ -0.71
NEDD4-210ENST00000513957 C10orf71Q711Q0 1435 aa10.64□□□□□ -0.71
NEDD4-210ENST00000513957 KIAA1551Q9HCM1 1747 aa10.64□□□□□ -0.71
NEDD4-210ENST00000513957 A1BGP04217 495 aa10.63□□□□□ -0.71
NEDD4-210ENST00000513957 MMP10P09238 476 aa10.63□□□□□ -0.71
NEDD4-210ENST00000513957 MSL1Q68DK7 614 aa10.63□□□□□ -0.71
NEDD4-210ENST00000513957 CLEC4GQ6UXB4 293 aa10.63□□□□□ -0.71
NEDD4-210ENST00000513957 WDR63Q8IWG1 891 aa10.63□□□□□ -0.71
NEDD4-210ENST00000513957 FAM9BQ8IZU0 186 aa10.63□□□□□ -0.71
NEDD4-210ENST00000513957 SYT17Q9BSW7 474 aa10.63□□□□□ -0.71
NEDD4-210ENST00000513957 FHDC1Q9C0D6 1143 aaPredicted RBP10.63□□□□□ -0.71
NEDD4-210ENST00000513957 CHD4Q14839 1912 aa10.62□□□□□ -0.71
NEDD4-210ENST00000513957 MBIPQ9NS73 344 aa10.62□□□□□ -0.71
NEDD4-210ENST00000513957 PARP3Q9Y6F1 533 aa10.62□□□□□ -0.71
NEDD4-210ENST00000513957 CARMIL3Q8ND23 1372 aa10.62□□□□□ -0.71
NEDD4-210ENST00000513957 ARFGEF1Q9Y6D6 1849 aa10.61□□□□□ -0.71
NEDD4-210ENST00000513957 PRAMEF22A3QJZ6 481 aa10.61□□□□□ -0.71
NEDD4-210ENST00000513957 ERVV-1B6SEH8 477 aa10.61□□□□□ -0.71
NEDD4-210ENST00000513957 USPL1Q5W0Q7 1092 aa10.61□□□□□ -0.71
NEDD4-210ENST00000513957 SMIM5Q71RC9 77 aa10.61□□□□□ -0.71
NEDD4-210ENST00000513957 DZIP3Q86Y13 1208 aaKnown RBP10.61□□□□□ -0.71
NEDD4-210ENST00000513957 SRP68Q9UHB9 627 aaKnown RBP10.61□□□□□ -0.71
NEDD4-210ENST00000513957 CIZ1Q9ULV3 898 aaPredicted RBP10.61□□□□□ -0.71
NEDD4-210ENST00000513957 LAS1LQ9Y4W2 734 aaKnown RBP10.61□□□□□ -0.71
NEDD4-210ENST00000513957 ATP10DQ9P241 1426 aa10.6□□□□□ -0.71
NEDD4-210ENST00000513957 N4BP2Q86UW6 1770 aaPredicted RBP10.6□□□□□ -0.71
NEDD4-210ENST00000513957 ARFGEF2Q9Y6D5 1785 aa10.6□□□□□ -0.71
NEDD4-210ENST00000513957 NBPF26B4DH59 902 aa10.6□□□□□ -0.71
NEDD4-210ENST00000513957 CAMTA2O94983 1202 aa10.6□□□□□ -0.71
NEDD4-210ENST00000513957 TM4SF1P30408 202 aa10.6□□□□□ -0.71
NEDD4-210ENST00000513957 TGFB2P61812 414 aa10.6□□□□□ -0.71
NEDD4-210ENST00000513957 NBPF10Q6P3W6 841 aaKnown RBP10.6□□□□□ -0.71
NEDD4-210ENST00000513957 KIF6Q6ZMV9 814 aa10.6□□□□□ -0.71
NEDD4-210ENST00000513957 NBPF15Q8N660 670 aa10.6□□□□□ -0.71
NEDD4-210ENST00000513957 ZNF330Q9Y3S2 320 aaPredicted RBP10.6□□□□□ -0.71
NEDD4-210ENST00000513957 POLRMTO00411 1230 aaKnown RBP10.59□□□□□ -0.71
NEDD4-210ENST00000513957 HDGFL1Q5TGJ6 251 aa10.59□□□□□ -0.71
NEDD4-210ENST00000513957 MYH16Q9H6N6 1097 aa10.59□□□□□ -0.71
NEDD4-210ENST00000513957 BCL2L12Q9HB09 334 aa10.59□□□□□ -0.71
NEDD4-210ENST00000513957 DDX21Q9NR30 783 aaKnown RBP eCLIP10.59□□□□□ -0.71
NEDD4-210ENST00000513957 PODXL2Q9NZ53 605 aa10.59□□□□□ -0.71
NEDD4-210ENST00000513957 DBF4Q9UBU7 674 aaPredicted RBP10.59□□□□□ -0.71
NEDD4-210ENST00000513957 IBTKQ9P2D0 1353 aaPredicted RBP10.59□□□□□ -0.71
NEDD4-210ENST00000513957 ANKRD31Q8N7Z5 1873 aa10.59□□□□□ -0.71
NEDD4-210ENST00000513957 MAP3K15Q6ZN16 1313 aa10.58□□□□□ -0.71
NEDD4-210ENST00000513957 ZNF521Q96K83 1311 aa10.58□□□□□ -0.71
NEDD4-210ENST00000513957 NFIXQ14938 502 aa10.58□□□□□ -0.72
NEDD4-210ENST00000513957 DUSP27Q5VZP5 1158 aa10.58□□□□□ -0.72
NEDD4-210ENST00000513957 LRP10Q7Z4F1 713 aa10.58□□□□□ -0.72
NEDD4-210ENST00000513957 PDZRN3Q9UPQ7 1066 aa10.58□□□□□ -0.72
NEDD4-210ENST00000513957 TBC1D2BQ9UPU7 963 aa10.58□□□□□ -0.72
NEDD4-210ENST00000513957 PXDNLA1KZ92 1463 aa10.57□□□□□ -0.72
NEDD4-210ENST00000513957 EIF2S2P20042 333 aaKnown RBP10.57□□□□□ -0.72
NEDD4-210ENST00000513957 DDR1Q08345 913 aa10.57□□□□□ -0.72
NEDD4-210ENST00000513957 PDIA6Q15084 440 aa10.57□□□□□ -0.72
NEDD4-210ENST00000513957 SETDB2Q96T68 719 aa10.57□□□□□ -0.72
NEDD4-210ENST00000513957 HYPKQ9NX55 129 aa10.57□□□□□ -0.72
NEDD4-210ENST00000513957 RIC1Q4ADV7 1423 aa10.57□□□□□ -0.72
NEDD4-210ENST00000513957 FANCIQ9NVI1 1328 aa10.57□□□□□ -0.72
NEDD4-210ENST00000513957 GOLGA2Q08379 1002 aa10.56□□□□□ -0.72
NEDD4-210ENST00000513957 HSP90AB3PQ58FF7 597 aa10.56□□□□□ -0.72
NEDD4-210ENST00000513957 CCDC30Q5VVM6 783 aa10.56□□□□□ -0.72
NEDD4-210ENST00000513957 TBC1D9BQ66K14 1250 aa10.56□□□□□ -0.72
NEDD4-210ENST00000513957 ZBTB47Q9UFB7 747 aaPredicted RBP10.56□□□□□ -0.72
NEDD4-210ENST00000513957 LAMB2P55268 1798 aa10.56□□□□□ -0.72
NEDD4-210ENST00000513957 RNF123Q5XPI4 1314 aa10.56□□□□□ -0.72
NEDD4-210ENST00000513957 COL11A2P13942 1736 aaPredicted RBP10.55□□□□□ -0.72
NEDD4-210ENST00000513957 SERPINB2P05120 415 aa10.55□□□□□ -0.72
NEDD4-210ENST00000513957 MYL6BP14649 208 aa10.55□□□□□ -0.72
NEDD4-210ENST00000513957 PIP4K2AP48426 406 aaPredicted RBP10.55□□□□□ -0.72
NEDD4-210ENST00000513957 ST5P78524 1137 aa10.55□□□□□ -0.72
NEDD4-210ENST00000513957 KRT24Q2M2I5 525 aa10.55□□□□□ -0.72
NEDD4-210ENST00000513957 GIGYF2Q6Y7W6 1299 aaKnown RBP10.55□□□□□ -0.72
NEDD4-210ENST00000513957 MIER1Q8N108 512 aa10.55□□□□□ -0.72
NEDD4-210ENST00000513957 NYXQ9GZU5 481 aa10.55□□□□□ -0.72
NEDD4-210ENST00000513957 CHPF2Q9P2E5 772 aa10.55□□□□□ -0.72
NEDD4-210ENST00000513957 E9PSI1 815 aa10.54□□□□□ -0.72
NEDD4-210ENST00000513957 GRIN3BO60391 1043 aa10.54□□□□□ -0.72
NEDD4-210ENST00000513957 CACNA1SQ13698 1873 aa10.54□□□□□ -0.72
NEDD4-210ENST00000513957 TWISTNBQ3B726 338 aaPredicted RBP10.54□□□□□ -0.72
NEDD4-210ENST00000513957 PARP10Q53GL7 1025 aa10.54□□□□□ -0.72
NEDD4-210ENST00000513957 CNBD1Q8NA66 436 aa10.54□□□□□ -0.72
NEDD4-210ENST00000513957 NLGN2Q8NFZ4 835 aa10.54□□□□□ -0.72
NEDD4-210ENST00000513957 ZBTB12Q9Y330 459 aaPredicted RBP10.54□□□□□ -0.72
NEDD4-210ENST00000513957 GOLGB1Q14789 3259 aaKnown RBP10.54□□□□□ -0.72
NEDD4-210ENST00000513957 UTRNP46939 3433 aa10.53□□□□□ -0.72
NEDD4-210ENST00000513957 PDE6BP35913 854 aa10.53□□□□□ -0.72
NEDD4-210ENST00000513957 TPTE2Q6XPS3 522 aa10.53□□□□□ -0.72
NEDD4-210ENST00000513957 TTLL7Q6ZT98 887 aa10.53□□□□□ -0.72
NEDD4-210ENST00000513957 C8orf58Q8NAV2 365 aa10.53□□□□□ -0.72
NEDD4-210ENST00000513957 PLBD2Q8NHP8 589 aa10.53□□□□□ -0.72
NEDD4-210ENST00000513957 TSR2Q969E8 191 aaKnown RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms