RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 TDRD9Q8NDG6 1382 aaKnown RBP7.9□□□□□ -1.14
NUP54-206ENST00000508465 PCBP4P57723 403 aaKnown RBP7.9□□□□□ -1.14
NUP54-206ENST00000508465 LAMC2Q13753 1193 aa7.9□□□□□ -1.14
NUP54-206ENST00000508465 DNMBPQ6XZF7 1577 aa7.89□□□□□ -1.15
NUP54-206ENST00000508465 IFT140Q96RY7 1462 aa7.89□□□□□ -1.15
NUP54-206ENST00000508465 BACH1O14867 736 aa7.89□□□□□ -1.15
NUP54-206ENST00000508465 MTFR1Q15390 333 aa7.89□□□□□ -1.15
NUP54-206ENST00000508465 PRRT3Q5FWE3 981 aa7.89□□□□□ -1.15
NUP54-206ENST00000508465 SAMD5Q5TGI4 173 aa7.89□□□□□ -1.15
NUP54-206ENST00000508465 CUX1P39880 1505 aa7.88□□□□□ -1.15
NUP54-206ENST00000508465 ELOA3CA0A087WX78 387 aaPredicted RBP7.88□□□□□ -1.15
NUP54-206ENST00000508465 ELOA3DA6NLF2 546 aaPredicted RBP7.88□□□□□ -1.15
NUP54-206ENST00000508465 SOX11P35716 441 aa7.88□□□□□ -1.15
NUP54-206ENST00000508465 ELOA3BQ3SY89 546 aa7.88□□□□□ -1.15
NUP54-206ENST00000508465 ELOA3Q8NG57 546 aa7.88□□□□□ -1.15
NUP54-206ENST00000508465 TRIM11Q96F44 468 aa7.88□□□□□ -1.15
NUP54-206ENST00000508465 NEUROD4Q9HD90 331 aa7.88□□□□□ -1.15
NUP54-206ENST00000508465 IQSEC3Q9UPP2 1182 aaPredicted RBP7.88□□□□□ -1.15
NUP54-206ENST00000508465 POLA1P09884 1462 aaPredicted RBP7.87□□□□□ -1.15
NUP54-206ENST00000508465 TMEM229AB2RXF0 380 aa7.87□□□□□ -1.15
NUP54-206ENST00000508465 ZMYM1Q5SVZ6 1142 aa7.87□□□□□ -1.15
NUP54-206ENST00000508465 APBA3O96018 575 aa7.86□□□□□ -1.15
NUP54-206ENST00000508465 ABL2P42684 1182 aa7.86□□□□□ -1.15
NUP54-206ENST00000508465 HCN2Q9UL51 889 aa7.86□□□□□ -1.15
NUP54-206ENST00000508465 FGD5Q6ZNL6 1462 aa7.86□□□□□ -1.15
NUP54-206ENST00000508465 ZNF295-AS1Q8N0V1 137 aa7.85□□□□□ -1.15
NUP54-206ENST00000508465 GDPD2Q9HCC8 539 aa7.85□□□□□ -1.15
NUP54-206ENST00000508465 EFSO43281 561 aa7.84□□□□□ -1.15
NUP54-206ENST00000508465 EML3Q32P44 896 aa7.84□□□□□ -1.15
NUP54-206ENST00000508465 SYT9Q86SS6 491 aa7.84□□□□□ -1.15
NUP54-206ENST00000508465 PSMG3-AS1Q96PY0 264 aa7.84□□□□□ -1.15
NUP54-206ENST00000508465 KRTAP4-8Q9BYQ9 185 aa7.84□□□□□ -1.15
NUP54-206ENST00000508465 PARP3Q9Y6F1 533 aa7.84□□□□□ -1.15
NUP54-206ENST00000508465 TARBP1Q13395 1621 aaKnown RBP7.84□□□□□ -1.15
NUP54-206ENST00000508465 LZTS3O60299 673 aaPredicted RBP7.83□□□□□ -1.16
NUP54-206ENST00000508465 SIN3BO75182 1162 aa7.83□□□□□ -1.16
NUP54-206ENST00000508465 ITGB7P26010 798 aa7.83□□□□□ -1.16
NUP54-206ENST00000508465 NEUROD1Q13562 356 aa7.83□□□□□ -1.16
NUP54-206ENST00000508465 STRN4Q9NRL3 753 aa7.83□□□□□ -1.16
NUP54-206ENST00000508465 NOD1Q9Y239 953 aa7.83□□□□□ -1.16
NUP54-206ENST00000508465 PCDHGA11Q9Y5H2 935 aa7.83□□□□□ -1.16
NUP54-206ENST00000508465 PSME1Q06323 249 aa7.82□□□□□ -1.16
NUP54-206ENST00000508465 TRIM28Q13263 835 aaKnown RBP7.82□□□□□ -1.16
NUP54-206ENST00000508465 LRRC69Q6ZNQ3 347 aa7.82□□□□□ -1.16
NUP54-206ENST00000508465 L3MBTL2Q969R5 705 aa7.82□□□□□ -1.16
NUP54-206ENST00000508465 NACC1Q96RE7 527 aa7.82□□□□□ -1.16
NUP54-206ENST00000508465 SCHIP1Q9P0W5 487 aaPredicted RBP7.82□□□□□ -1.16
NUP54-206ENST00000508465 USP3Q9Y6I4 520 aa7.82□□□□□ -1.16
NUP54-206ENST00000508465 SCO2A0A1W2PP80 73 aa7.81□□□□□ -1.16
NUP54-206ENST00000508465 ADARB2-AS1A8MUL3 147 aa7.81□□□□□ -1.16
NUP54-206ENST00000508465 NOS2P35228 1153 aa7.81□□□□□ -1.16
NUP54-206ENST00000508465 TXLNAP40222 546 aa7.81□□□□□ -1.16
NUP54-206ENST00000508465 CHMP7Q8WUX9 453 aaPredicted RBP7.81□□□□□ -1.16
NUP54-206ENST00000508465 ZNF232Q9UNY5 417 aa7.81□□□□□ -1.16
NUP54-206ENST00000508465 GPC6Q9Y625 555 aaPredicted RBP7.81□□□□□ -1.16
NUP54-206ENST00000508465 EIF4G3O43432 1585 aaKnown RBP7.8□□□□□ -1.16
NUP54-206ENST00000508465 WRNQ14191 1432 aaPredicted RBP eCLIP7.8□□□□□ -1.16
NUP54-206ENST00000508465 TEAD4Q15561 434 aa7.8□□□□□ -1.16
NUP54-206ENST00000508465 RSPO4Q2I0M5 234 aaPredicted RBP7.8□□□□□ -1.16
NUP54-206ENST00000508465 M0R082 166 aa7.79□□□□□ -1.16
NUP54-206ENST00000508465 SKIP12755 728 aa7.79□□□□□ -1.16
NUP54-206ENST00000508465 GTF2IP78347 998 aa7.79□□□□□ -1.16
NUP54-206ENST00000508465 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.79□□□□□ -1.16
NUP54-206ENST00000508465 ZNF417Q8TAU3 575 aa7.79□□□□□ -1.16
NUP54-206ENST00000508465 TNFRSF25Q93038 417 aa7.79□□□□□ -1.16
NUP54-206ENST00000508465 ZNF587Q96SQ5 575 aaPredicted RBP7.79□□□□□ -1.16
NUP54-206ENST00000508465 PRDM6Q9NQX0 595 aa7.79□□□□□ -1.16
NUP54-206ENST00000508465 TPSG1Q9NRR2 321 aa7.79□□□□□ -1.16
NUP54-206ENST00000508465 EML1O00423 815 aa7.78□□□□□ -1.16
NUP54-206ENST00000508465 NKAPLQ5M9Q1 402 aa7.78□□□□□ -1.16
NUP54-206ENST00000508465 ZDHHC1Q8WTX9 485 aa7.78□□□□□ -1.16
NUP54-206ENST00000508465 ZNF358Q9NW07 568 aa7.78□□□□□ -1.16
NUP54-206ENST00000508465 SYNJ1O43426 1573 aa7.77□□□□□ -1.17
NUP54-206ENST00000508465 GAPVD1Q14C86 1478 aa7.77□□□□□ -1.17
NUP54-206ENST00000508465 SNAPC4Q5SXM2 1469 aa7.77□□□□□ -1.17
NUP54-206ENST00000508465 SERTM1A2A2V5 107 aa7.77□□□□□ -1.17
NUP54-206ENST00000508465 SFSWAPQ12872 951 aaKnown RBP7.77□□□□□ -1.17
NUP54-206ENST00000508465 MDFIQ99750 246 aa7.77□□□□□ -1.17
NUP54-206ENST00000508465 ANKIB1Q9P2G1 1089 aa7.77□□□□□ -1.17
NUP54-206ENST00000508465 CHMP3Q9Y3E7 222 aa7.77□□□□□ -1.17
NUP54-206ENST00000508465 PIK3CDO00329 1044 aa7.76□□□□□ -1.17
NUP54-206ENST00000508465 CYB5RLQ6IPT4 315 aa7.76□□□□□ -1.17
NUP54-206ENST00000508465 SLC9A9Q8IVB4 645 aa7.76□□□□□ -1.17
NUP54-206ENST00000508465 WWC1Q8IX03 1113 aa7.76□□□□□ -1.17
NUP54-206ENST00000508465 MICALL1Q8N3F8 863 aa7.76□□□□□ -1.17
NUP54-206ENST00000508465 NFATC2IPQ8NCF5 419 aa7.76□□□□□ -1.17
NUP54-206ENST00000508465 RHPN1Q8TCX5 695 aa7.76□□□□□ -1.17
NUP54-206ENST00000508465 GRIN2BQ13224 1484 aa7.75□□□□□ -1.17
NUP54-206ENST00000508465 FAM229AH3BQW9 127 aa7.75□□□□□ -1.17
NUP54-206ENST00000508465 DYRK3O43781 588 aa7.75□□□□□ -1.17
NUP54-206ENST00000508465 SPEM2Q0P670 501 aa7.75□□□□□ -1.17
NUP54-206ENST00000508465 SLC30A3Q99726 388 aa7.75□□□□□ -1.17
NUP54-206ENST00000508465 ABCA10Q8WWZ4 1543 aa7.74□□□□□ -1.17
NUP54-206ENST00000508465 C9orf172C9J069 976 aa7.74□□□□□ -1.17
NUP54-206ENST00000508465 ADH7P40394 386 aa7.74□□□□□ -1.17
NUP54-206ENST00000508465 NCOA4Q13772 614 aa7.74□□□□□ -1.17
NUP54-206ENST00000508465 COL9A3Q14050 684 aaPredicted RBP7.74□□□□□ -1.17
NUP54-206ENST00000508465 TRAPPC3LQ5T215 181 aa7.74□□□□□ -1.17
NUP54-206ENST00000508465 TRIM50Q86XT4 487 aa7.74□□□□□ -1.17
NUP54-206ENST00000508465 TNS4Q8IZW8 715 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms