RNA–Protein interactions for RNA: ENST00000506924.1

CLCN3-205, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 567 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-205ENST00000506924 CARD14Q9BXL6 1004 aa13.09□□□□□ -0.31
CLCN3-205ENST00000506924 PCDHB15Q9Y5E8 787 aa13.09□□□□□ -0.31
CLCN3-205ENST00000506924 SLIT2O94813 1529 aa13.08□□□□□ -0.31
CLCN3-205ENST00000506924 FMNL1O95466 1100 aaPredicted RBP13.08□□□□□ -0.32
CLCN3-205ENST00000506924 TJAP1Q5JTD0 557 aa13.08□□□□□ -0.32
CLCN3-205ENST00000506924 BRICD5Q6PL45 260 aa13.08□□□□□ -0.32
CLCN3-205ENST00000506924 RETREG3Q86VR2 466 aa13.08□□□□□ -0.32
CLCN3-205ENST00000506924 UNC5CLQ8IV45 518 aa13.08□□□□□ -0.32
CLCN3-205ENST00000506924 THAP11Q96EK4 314 aa13.08□□□□□ -0.32
CLCN3-205ENST00000506924 TRPC5Q9UL62 973 aaPredicted RBP13.08□□□□□ -0.32
CLCN3-205ENST00000506924 CCDC9Q9Y3X0 531 aaKnown RBP13.08□□□□□ -0.32
CLCN3-205ENST00000506924 GGNBP2Q9H3C7 697 aa13.07□□□□□ -0.32
CLCN3-205ENST00000506924 STRN4Q9NRL3 753 aa13.07□□□□□ -0.32
CLCN3-205ENST00000506924 KIF7Q2M1P5 1343 aa13.07□□□□□ -0.32
CLCN3-205ENST00000506924 COL14A1Q05707 1796 aaKnown RBP13.07□□□□□ -0.32
CLCN3-205ENST00000506924 ATRNO75882 1429 aa13.06□□□□□ -0.32
CLCN3-205ENST00000506924 NSD3Q9BZ95 1437 aa13.06□□□□□ -0.32
CLCN3-205ENST00000506924 ZPR1O75312 459 aa13.06□□□□□ -0.32
CLCN3-205ENST00000506924 ITGBL1O95965 494 aaPredicted RBP13.06□□□□□ -0.32
CLCN3-205ENST00000506924 FBLN1P23142 703 aa13.06□□□□□ -0.32
CLCN3-205ENST00000506924 QPCTQ16769 361 aa13.06□□□□□ -0.32
CLCN3-205ENST00000506924 GTF3C3Q9Y5Q9 886 aa13.06□□□□□ -0.32
CLCN3-205ENST00000506924 SLIT3O75094 1523 aa13.06□□□□□ -0.32
CLCN3-205ENST00000506924 C6orf229H3BNL8 230 aa13.05□□□□□ -0.32
CLCN3-205ENST00000506924 RBM6P78332 1123 aaKnown RBP13.05□□□□□ -0.32
CLCN3-205ENST00000506924 TMEM259Q4ZIN3 620 aa13.05□□□□□ -0.32
CLCN3-205ENST00000506924 PANK3Q9H999 370 aa13.05□□□□□ -0.32
CLCN3-205ENST00000506924 USP31Q70CQ4 1352 aa13.05□□□□□ -0.32
CLCN3-205ENST00000506924 FYB1O15117 783 aa13.04□□□□□ -0.32
CLCN3-205ENST00000506924 EVA1CP58658 441 aa13.04□□□□□ -0.32
CLCN3-205ENST00000506924 COPS2P61201 443 aa13.04□□□□□ -0.32
CLCN3-205ENST00000506924 KCNH5Q8NCM2 988 aa13.04□□□□□ -0.32
CLCN3-205ENST00000506924 COG3Q96JB2 828 aa13.04□□□□□ -0.32
CLCN3-205ENST00000506924 GJD4Q96KN9 370 aaPredicted RBP13.04□□□□□ -0.32
CLCN3-205ENST00000506924 NWD2Q9ULI1 1742 aa13.04□□□□□ -0.32
CLCN3-205ENST00000506924 NRAPQ86VF7 1730 aa13.03□□□□□ -0.32
CLCN3-205ENST00000506924 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.03□□□□□ -0.32
CLCN3-205ENST00000506924 RFC5P40937 340 aa13.03□□□□□ -0.32
CLCN3-205ENST00000506924 VPS72Q15906 364 aa13.03□□□□□ -0.32
CLCN3-205ENST00000506924 CSPP1Q1MSJ5 1256 aa13.03□□□□□ -0.32
CLCN3-205ENST00000506924 DESI1Q6ICB0 168 aa13.03□□□□□ -0.32
CLCN3-205ENST00000506924 USB1Q9BQ65 265 aaKnown RBP13.03□□□□□ -0.32
CLCN3-205ENST00000506924 CPDO75976 1380 aa13.03□□□□□ -0.32
CLCN3-205ENST00000506924 NFAT5O94916 1531 aa13.03□□□□□ -0.32
CLCN3-205ENST00000506924 CAMTA1Q9Y6Y1 1673 aa13.02□□□□□ -0.32
CLCN3-205ENST00000506924 MSS51Q4VC12 460 aa13.02□□□□□ -0.33
CLCN3-205ENST00000506924 ARHGEF25Q86VW2 580 aa13.02□□□□□ -0.33
CLCN3-205ENST00000506924 BANK1Q8NDB2 785 aa13.02□□□□□ -0.33
CLCN3-205ENST00000506924 USP35Q9P2H5 1018 aa13.02□□□□□ -0.33
CLCN3-205ENST00000506924 WASHC2AQ641Q2 1341 aa13.02□□□□□ -0.33
CLCN3-205ENST00000506924 OVOS2A0A0J9YW53 1432 aa13.02□□□□□ -0.33
CLCN3-205ENST00000506924 OVOS2Q6IE36 1432 aa13.02□□□□□ -0.33
CLCN3-205ENST00000506924 KIF20BQ96Q89 1820 aa13.02□□□□□ -0.33
CLCN3-205ENST00000506924 LARP1Q6PKG0 1096 aaKnown RBP13.01□□□□□ -0.33
CLCN3-205ENST00000506924 RNF19BQ6ZMZ0 732 aa13.01□□□□□ -0.33
CLCN3-205ENST00000506924 RGS12O14924 1447 aa13.01□□□□□ -0.33
CLCN3-205ENST00000506924 GLI3P10071 1580 aa13.01□□□□□ -0.33
CLCN3-205ENST00000506924 RGPD5Q99666 1765 aa13□□□□□ -0.33
CLCN3-205ENST00000506924 USP54Q70EL1 1684 aa13□□□□□ -0.33
CLCN3-205ENST00000506924 LMO7Q8WWI1 1683 aa13□□□□□ -0.33
CLCN3-205ENST00000506924 CCDC7Q96M83 1385 aa13□□□□□ -0.33
CLCN3-205ENST00000506924 A0A0G2JS52 829 aa13□□□□□ -0.33
CLCN3-205ENST00000506924 SOCS7O14512 581 aa13□□□□□ -0.33
CLCN3-205ENST00000506924 ADH1BP00325 375 aa13□□□□□ -0.33
CLCN3-205ENST00000506924 MYT1Q01538 1121 aa13□□□□□ -0.33
CLCN3-205ENST00000506924 CNGB1Q14028 1251 aaPredicted RBP13□□□□□ -0.33
CLCN3-205ENST00000506924 SPSB2Q99619 263 aa13□□□□□ -0.33
CLCN3-205ENST00000506924 COL18A1P39060 1754 aa12.99□□□□□ -0.33
CLCN3-205ENST00000506924 AATKQ6ZMQ8 1374 aa12.99□□□□□ -0.33
CLCN3-205ENST00000506924 KCNC4Q03721 635 aa12.99□□□□□ -0.33
CLCN3-205ENST00000506924 RRS1Q15050 365 aaKnown RBP12.99□□□□□ -0.33
CLCN3-205ENST00000506924 RTL5Q5HYW3 569 aaPredicted RBP12.99□□□□□ -0.33
CLCN3-205ENST00000506924 HELBQ8NG08 1087 aaPredicted RBP12.99□□□□□ -0.33
CLCN3-205ENST00000506924 LTN1O94822 1766 aa12.99□□□□□ -0.33
CLCN3-205ENST00000506924 CGNL1Q0VF96 1302 aa12.98□□□□□ -0.33
CLCN3-205ENST00000506924 SPATA31A5Q5VU36 1347 aa12.98□□□□□ -0.33
CLCN3-205ENST00000506924 SPATA31A7Q8IWB4 1347 aa12.98□□□□□ -0.33
CLCN3-205ENST00000506924 CSB-PGBD3P0DP91 1061 aa12.98□□□□□ -0.33
CLCN3-205ENST00000506924 TNNT2P45379 298 aaPredicted RBP12.98□□□□□ -0.33
CLCN3-205ENST00000506924 IFFO2Q5TF58 517 aa12.98□□□□□ -0.33
CLCN3-205ENST00000506924 COL5A2P05997 1499 aaPredicted RBP12.97□□□□□ -0.33
CLCN3-205ENST00000506924 MAP3K19Q56UN5 1328 aa12.97□□□□□ -0.33
CLCN3-205ENST00000506924 FLIIQ13045 1269 aa12.97□□□□□ -0.33
CLCN3-205ENST00000506924 SEPT12Q8IYM1 358 aa12.97□□□□□ -0.33
CLCN3-205ENST00000506924 PRR7Q8TB68 274 aa12.97□□□□□ -0.33
CLCN3-205ENST00000506924 LTV1Q96GA3 475 aaPredicted RBP12.97□□□□□ -0.33
CLCN3-205ENST00000506924 SPATA31A1Q5TZJ5 1347 aa12.96□□□□□ -0.33
CLCN3-205ENST00000506924 ZEB1P37275 1124 aaPredicted RBP12.96□□□□□ -0.33
CLCN3-205ENST00000506924 AMPHP49418 695 aa12.96□□□□□ -0.33
CLCN3-205ENST00000506924 TOM1L2Q6ZVM7 507 aa12.96□□□□□ -0.33
CLCN3-205ENST00000506924 SYMPKQ92797 1274 aaKnown RBP12.96□□□□□ -0.33
CLCN3-205ENST00000506924 KNSTRNQ9Y448 316 aa12.96□□□□□ -0.33
CLCN3-205ENST00000506924 CDK12Q9NYV4 1490 aaPredicted RBP12.96□□□□□ -0.34
CLCN3-205ENST00000506924 CFAP99D6REC4 459 aa12.95□□□□□ -0.34
CLCN3-205ENST00000506924 ERICH6Q7L0X2 663 aa12.95□□□□□ -0.34
CLCN3-205ENST00000506924 ZNF516Q92618 1163 aa12.95□□□□□ -0.34
CLCN3-205ENST00000506924 PPM1GO15355 546 aaPredicted RBP12.94□□□□□ -0.34
CLCN3-205ENST00000506924 ANKRD24Q8TF21 1146 aa12.94□□□□□ -0.34
CLCN3-205ENST00000506924 WDR17Q8IZU2 1322 aa12.93□□□□□ -0.34
CLCN3-205ENST00000506924 BRWD3Q6RI45 1802 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms