RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 GLTPD2A6NH11 291 aa17.14■□□□□ 0.33
TCOF1-209ENST00000506630 RASSF7Q02833 373 aa17.14■□□□□ 0.33
TCOF1-209ENST00000506630 LAS1LQ9Y4W2 734 aaKnown RBP17.14■□□□□ 0.33
TCOF1-209ENST00000506630 TNRC6CQ9HCJ0 1690 aaKnown RBP17.13■□□□□ 0.33
TCOF1-209ENST00000506630 A1BGP04217 495 aa17.13■□□□□ 0.33
TCOF1-209ENST00000506630 PIP4K2AP48426 406 aaPredicted RBP17.13■□□□□ 0.33
TCOF1-209ENST00000506630 NFIXQ14938 502 aa17.13■□□□□ 0.33
TCOF1-209ENST00000506630 FAM9BQ8IZU0 186 aa17.13■□□□□ 0.33
TCOF1-209ENST00000506630 TTLL6Q8N841 843 aa17.13■□□□□ 0.33
TCOF1-209ENST00000506630 NARFQ9UHQ1 456 aa17.13■□□□□ 0.33
TCOF1-209ENST00000506630 EIF4A1P60842 406 aaKnown RBP17.12■□□□□ 0.33
TCOF1-209ENST00000506630 BABAM1Q9NWV8 329 aa17.12■□□□□ 0.33
TCOF1-209ENST00000506630 SERPINB2P05120 415 aa17.11■□□□□ 0.33
TCOF1-209ENST00000506630 PRELPP51888 382 aa17.11■□□□□ 0.33
TCOF1-209ENST00000506630 EIF5P55010 431 aaKnown RBP17.11■□□□□ 0.33
TCOF1-209ENST00000506630 DPY19L2Q6NUT2 758 aa17.11■□□□□ 0.33
TCOF1-209ENST00000506630 NPM2Q86SE8 214 aaKnown RBP17.11■□□□□ 0.33
TCOF1-209ENST00000506630 A0A087WZG4 1122 aa17.1■□□□□ 0.33
TCOF1-209ENST00000506630 H0YIN7 160 aa17.1■□□□□ 0.33
TCOF1-209ENST00000506630 IL6STP40189 918 aaPredicted RBP17.1■□□□□ 0.33
TCOF1-209ENST00000506630 C2CD5Q86YS7 1000 aa17.1■□□□□ 0.33
TCOF1-209ENST00000506630 NRXN2Q9P2S2 1712 aa17.1■□□□□ 0.33
TCOF1-209ENST00000506630 HSPA1AP0DMV8 641 aaKnown RBP17.09■□□□□ 0.33
TCOF1-209ENST00000506630 HSPA1BP0DMV9 641 aaKnown RBP17.09■□□□□ 0.33
TCOF1-209ENST00000506630 TBC1D2BQ9UPU7 963 aa17.09■□□□□ 0.33
TCOF1-209ENST00000506630 NUP98P52948 1817 aa17.09■□□□□ 0.33
TCOF1-209ENST00000506630 CARMIL3Q8ND23 1372 aa17.08■□□□□ 0.32
TCOF1-209ENST00000506630 CHL1O00533 1208 aa17.08■□□□□ 0.32
TCOF1-209ENST00000506630 CALD1Q05682 793 aaKnown RBP17.08■□□□□ 0.32
TCOF1-209ENST00000506630 CCDC24Q8N4L8 307 aa17.08■□□□□ 0.32
TCOF1-209ENST00000506630 SBF1O95248 1867 aa17.07■□□□□ 0.32
TCOF1-209ENST00000506630 TBC1D9BQ66K14 1250 aa17.07■□□□□ 0.32
TCOF1-209ENST00000506630 PPP4R3CPQ6ZMV5 832 aa17.07■□□□□ 0.32
TCOF1-209ENST00000506630 BICDL1Q6ZP65 573 aa17.07■□□□□ 0.32
TCOF1-209ENST00000506630 CFAP44Q96MT7 982 aa17.07■□□□□ 0.32
TCOF1-209ENST00000506630 NFKBIEO00221 500 aa17.06■□□□□ 0.32
TCOF1-209ENST00000506630 SALL2Q9Y467 1007 aaPredicted RBP17.06■□□□□ 0.32
TCOF1-209ENST00000506630 NBPF26B4DH59 902 aa17.05■□□□□ 0.32
TCOF1-209ENST00000506630 GNAI1P63096 354 aa17.05■□□□□ 0.32
TCOF1-209ENST00000506630 DIEXFQ68CQ4 756 aaKnown RBP17.05■□□□□ 0.32
TCOF1-209ENST00000506630 NBPF10Q6P3W6 841 aaKnown RBP17.05■□□□□ 0.32
TCOF1-209ENST00000506630 DZIP3Q86Y13 1208 aaKnown RBP17.05■□□□□ 0.32
TCOF1-209ENST00000506630 NBPF15Q8N660 670 aa17.05■□□□□ 0.32
TCOF1-209ENST00000506630 MBIPQ9NS73 344 aa17.05■□□□□ 0.32
TCOF1-209ENST00000506630 IFT57Q9NWB7 429 aa17.05■□□□□ 0.32
TCOF1-209ENST00000506630 PDZRN3Q9UPQ7 1066 aa17.05■□□□□ 0.32
TCOF1-209ENST00000506630 ANKRD31Q8N7Z5 1873 aa17.05■□□□□ 0.32
TCOF1-209ENST00000506630 MYL6BP14649 208 aa17.04■□□□□ 0.32
TCOF1-209ENST00000506630 EIF2S2P20042 333 aaKnown RBP17.04■□□□□ 0.32
TCOF1-209ENST00000506630 PDE6BP35913 854 aa17.04■□□□□ 0.32
TCOF1-209ENST00000506630 CCDC27Q2M243 656 aa17.04■□□□□ 0.32
TCOF1-209ENST00000506630 KRT24Q2M2I5 525 aa17.04■□□□□ 0.32
TCOF1-209ENST00000506630 ZNF622Q969S3 477 aaKnown RBP eCLIP17.04■□□□□ 0.327e-6■□□□□ 9.9
TCOF1-209ENST00000506630 CCER2I3L3R5 266 aa17.03■□□□□ 0.32
TCOF1-209ENST00000506630 CAMTA2O94983 1202 aa17.03■□□□□ 0.32
TCOF1-209ENST00000506630 ZNF853P0CG23 659 aa17.03■□□□□ 0.32
TCOF1-209ENST00000506630 ERFEQ4G0M1 354 aa17.03■□□□□ 0.32
TCOF1-209ENST00000506630 WWC1Q8IX03 1113 aa17.03■□□□□ 0.32
TCOF1-209ENST00000506630 NGEFQ8N5V2 710 aa17.03■□□□□ 0.32
TCOF1-209ENST00000506630 ERBB4Q15303 1308 aa17.02■□□□□ 0.32
TCOF1-209ENST00000506630 POTECB2RU33 542 aa17.02■□□□□ 0.32
TCOF1-209ENST00000506630 NECTIN2Q92692 538 aa17.02■□□□□ 0.32
TCOF1-209ENST00000506630 BRIP1Q9BX63 1249 aa17.02■□□□□ 0.32
TCOF1-209ENST00000506630 ZNF219Q9P2Y4 722 aaPredicted RBP17.02■□□□□ 0.32
TCOF1-209ENST00000506630 ANKRD36CQ5JPF3 1778 aa17.02■□□□□ 0.31
TCOF1-209ENST00000506630 C21orf2O43822 256 aa17.01■□□□□ 0.31
TCOF1-209ENST00000506630 DLEC1Q9Y238 1755 aa17■□□□□ 0.31
TCOF1-209ENST00000506630 NPHP1O15259 732 aa17■□□□□ 0.31
TCOF1-209ENST00000506630 CACNA1SQ13698 1873 aa17■□□□□ 0.31
TCOF1-209ENST00000506630 NCBP3Q53F19 620 aaKnown RBP17■□□□□ 0.31
TCOF1-209ENST00000506630 CHADLQ6NUI6 762 aa17■□□□□ 0.31
TCOF1-209ENST00000506630 CREBZFQ9NS37 354 aa17■□□□□ 0.31
TCOF1-209ENST00000506630 COL11A2P13942 1736 aaPredicted RBP16.99■□□□□ 0.31
TCOF1-209ENST00000506630 CACNA1FO60840 1977 aa16.99■□□□□ 0.31
TCOF1-209ENST00000506630 HDGFL1Q5TGJ6 251 aa16.99■□□□□ 0.31
TCOF1-209ENST00000506630 KIF6Q6ZMV9 814 aa16.99■□□□□ 0.31
TCOF1-209ENST00000506630 ZNF652Q9Y2D9 606 aa16.99■□□□□ 0.31
TCOF1-209ENST00000506630 ANXA1P04083 346 aa16.98■□□□□ 0.31
TCOF1-209ENST00000506630 HOXB7P09629 217 aa16.98■□□□□ 0.31
TCOF1-209ENST00000506630 DUSP27Q5VZP5 1158 aa16.98■□□□□ 0.31
TCOF1-209ENST00000506630 PRR5LQ6MZQ0 368 aa16.98■□□□□ 0.31
TCOF1-209ENST00000506630 TSR2Q969E8 191 aaKnown RBP16.98■□□□□ 0.31
TCOF1-209ENST00000506630 TAOK3Q9H2K8 898 aa16.98■□□□□ 0.31
TCOF1-209ENST00000506630 MKRN1Q9UHC7 482 aaKnown RBP16.98■□□□□ 0.31
TCOF1-209ENST00000506630 TIAM2Q8IVF5 1701 aa16.98■□□□□ 0.31
TCOF1-209ENST00000506630 LTBP3Q9NS15 1303 aa16.97■□□□□ 0.31
TCOF1-209ENST00000506630 PDIA6Q15084 440 aa16.97■□□□□ 0.31
TCOF1-209ENST00000506630 PROSER3Q2NL68 480 aa16.97■□□□□ 0.31
TCOF1-209ENST00000506630 TTLL7Q6ZT98 887 aa16.97■□□□□ 0.31
TCOF1-209ENST00000506630 CNKSR1Q969H4 720 aa16.97■□□□□ 0.31
TCOF1-209ENST00000506630 ARFGEF2Q9Y6D5 1785 aa16.97■□□□□ 0.31
TCOF1-209ENST00000506630 IL16Q14005 1332 aa16.96■□□□□ 0.31
TCOF1-209ENST00000506630 ELL2O00472 640 aaPredicted RBP16.96■□□□□ 0.31
TCOF1-209ENST00000506630 HLFQ16534 295 aa16.96■□□□□ 0.31
TCOF1-209ENST00000506630 SOGA3Q5TF21 947 aa16.96■□□□□ 0.31
TCOF1-209ENST00000506630 CLEC4GQ6UXB4 293 aa16.96■□□□□ 0.31
TCOF1-209ENST00000506630 MIER1Q8N108 512 aa16.96■□□□□ 0.31
TCOF1-209ENST00000506630 CNBD1Q8NA66 436 aa16.96■□□□□ 0.31
TCOF1-209ENST00000506630 SETDB2Q96T68 719 aa16.96■□□□□ 0.31
TCOF1-209ENST00000506630 MAP3K15Q6ZN16 1313 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms