RNA–Protein interactions for RNA: ENST00000505937.2

PCDH1-205, Transcript of protocadherin 1, human

TSL 5

Gene PCDH1, Length 825 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH1-205	ENST00000505937	DIEXF	Q68CQ4	756 aa	Known RBP	20.04	■□□□□ 0.8
PCDH1-205	ENST00000505937	CNBD1	Q8NA66	436 aa		20.04	■□□□□ 0.8
PCDH1-205	ENST00000505937	DDX21	Q9NR30	783 aa	Known RBP eCLIP	20.04	■□□□□ 0.8
PCDH1-205	ENST00000505937	NIP7	Q9Y221	180 aa	Known RBP eCLIP	20.04	■□□□□ 0.8
PCDH1-205	ENST00000505937	YBX3	P16989	372 aa	Known RBP eCLIP	20.03	■□□□□ 0.8
PCDH1-205	ENST00000505937	ST5	P78524	1137 aa		20.03	■□□□□ 0.8
PCDH1-205	ENST00000505937	PDIA6	Q15084	440 aa		20.03	■□□□□ 0.8
PCDH1-205	ENST00000505937	TTLL7	Q6ZT98	887 aa		20.03	■□□□□ 0.8
PCDH1-205	ENST00000505937	NBPF5P	Q86XG9	351 aa	Predicted RBP	20.03	■□□□□ 0.8
PCDH1-205	ENST00000505937	WDR63	Q8IWG1	891 aa		20.03	■□□□□ 0.8
PCDH1-205	ENST00000505937	DBF4	Q9UBU7	674 aa	Predicted RBP	20.03	■□□□□ 0.8
PCDH1-205	ENST00000505937	WWC3	Q9ULE0	1092 aa		20.03	■□□□□ 0.8
PCDH1-205	ENST00000505937	ZBTB3	Q9H5J0	574 aa		20.02	■□□□□ 0.8
PCDH1-205	ENST00000505937	CHPF2	Q9P2E5	772 aa		20.02	■□□□□ 0.8
PCDH1-205	ENST00000505937	PDZRN3	Q9UPQ7	1066 aa		20.02	■□□□□ 0.8
PCDH1-205	ENST00000505937	ELL2	O00472	640 aa	Predicted RBP	20.01	■□□□□ 0.79
PCDH1-205	ENST00000505937	ANXA1	P04083	346 aa		20.01	■□□□□ 0.79
PCDH1-205	ENST00000505937	YY1	P25490	414 aa		20.01	■□□□□ 0.79
PCDH1-205	ENST00000505937	HLF	Q16534	295 aa		20.01	■□□□□ 0.79
PCDH1-205	ENST00000505937	PROSER3	Q2NL68	480 aa		20.01	■□□□□ 0.79
PCDH1-205	ENST00000505937	TPTE2	Q6XPS3	522 aa		20.01	■□□□□ 0.79
PCDH1-205	ENST00000505937	PIM2	Q9P1W9	311 aa		20.01	■□□□□ 0.79
PCDH1-205	ENST00000505937	PDE6B	P35913	854 aa		20	■□□□□ 0.79
PCDH1-205	ENST00000505937	AIMP1	Q12904	312 aa	Known RBP	20	■□□□□ 0.79
PCDH1-205	ENST00000505937	PRR5L	Q6MZQ0	368 aa		20	■□□□□ 0.79
PCDH1-205	ENST00000505937	COPS6	Q7L5N1	327 aa		20	■□□□□ 0.79
PCDH1-205	ENST00000505937	XAGE3	Q8WTP9	111 aa		20	■□□□□ 0.79
PCDH1-205	ENST00000505937	TSR2	Q969E8	191 aa	Known RBP	20	■□□□□ 0.79
PCDH1-205	ENST00000505937	BRIP1	Q9BX63	1249 aa		20	■□□□□ 0.79
PCDH1-205	ENST00000505937	HYPK	Q9NX55	129 aa		20	■□□□□ 0.79
PCDH1-205	ENST00000505937	BCS1L	Q9Y276	419 aa		20	■□□□□ 0.79
PCDH1-205	ENST00000505937	BCOR	Q6W2J9	1755 aa		20	■□□□□ 0.79
PCDH1-205	ENST00000505937	KIF13B	Q9NQT8	1826 aa		19.99	■□□□□ 0.79
PCDH1-205	ENST00000505937		H0YIN7	160 aa		19.99	■□□□□ 0.79
PCDH1-205	ENST00000505937	GTF2E1	P29083	439 aa	Predicted RBP	19.99	■□□□□ 0.79
PCDH1-205	ENST00000505937	DALRD3	Q5D0E6	543 aa	Known RBP	19.99	■□□□□ 0.79
PCDH1-205	ENST00000505937	LRP10	Q7Z4F1	713 aa		19.99	■□□□□ 0.79
PCDH1-205	ENST00000505937	NYX	Q9GZU5	481 aa		19.99	■□□□□ 0.79
PCDH1-205	ENST00000505937	CHRNA5	P30532	468 aa		19.98	■□□□□ 0.79
PCDH1-205	ENST00000505937	HSP90AB3P	Q58FF7	597 aa		19.98	■□□□□ 0.79
PCDH1-205	ENST00000505937	CCDC30	Q5VVM6	783 aa		19.98	■□□□□ 0.79
PCDH1-205	ENST00000505937	GIGYF2	Q6Y7W6	1299 aa	Known RBP	19.98	■□□□□ 0.79
PCDH1-205	ENST00000505937	C2CD5	Q86YS7	1000 aa		19.98	■□□□□ 0.79
PCDH1-205	ENST00000505937	C8orf58	Q8NAV2	365 aa		19.98	■□□□□ 0.79
PCDH1-205	ENST00000505937	ATP10D	Q9P241	1426 aa		19.97	■□□□□ 0.79
PCDH1-205	ENST00000505937	MYH16	Q9H6N6	1097 aa		19.97	■□□□□ 0.79
PCDH1-205	ENST00000505937	NRXN2	Q9P2S2	1712 aa		19.96	■□□□□ 0.79
PCDH1-205	ENST00000505937	GOLGB1	Q14789	3259 aa	Known RBP	19.96	■□□□□ 0.79
PCDH1-205	ENST00000505937	FAM177B	A6PVY3	158 aa		19.96	■□□□□ 0.79
PCDH1-205	ENST00000505937	KCNA3	P22001	575 aa		19.96	■□□□□ 0.79
PCDH1-205	ENST00000505937	GPT	P24298	496 aa		19.96	■□□□□ 0.79
PCDH1-205	ENST00000505937	GOLGA2	Q08379	1002 aa		19.96	■□□□□ 0.79
PCDH1-205	ENST00000505937	PARP10	Q53GL7	1025 aa		19.96	■□□□□ 0.79
PCDH1-205	ENST00000505937	TWISTNB	Q3B726	338 aa	Predicted RBP	19.95	■□□□□ 0.78
PCDH1-205	ENST00000505937	CCDC24	Q8N4L8	307 aa		19.95	■□□□□ 0.78
PCDH1-205	ENST00000505937	STK31	Q9BXU1	1019 aa		19.95	■□□□□ 0.78
PCDH1-205	ENST00000505937	FANCI	Q9NVI1	1328 aa		19.95	■□□□□ 0.78
PCDH1-205	ENST00000505937	AFDN	P55196	1824 aa	Known RBP	19.95	■□□□□ 0.78
PCDH1-205	ENST00000505937	ANKRD13D	Q6ZTN6	518 aa		19.94	■□□□□ 0.78
PCDH1-205	ENST00000505937	PPP1R42	Q7Z4L9	355 aa		19.94	■□□□□ 0.78
PCDH1-205	ENST00000505937	ZNF34	Q8IZ26	560 aa		19.94	■□□□□ 0.78
PCDH1-205	ENST00000505937	TSPYL6	Q8N831	410 aa		19.94	■□□□□ 0.78
PCDH1-205	ENST00000505937	PLBD2	Q8NHP8	589 aa		19.94	■□□□□ 0.78
PCDH1-205	ENST00000505937	UTRN	P46939	3433 aa		19.94	■□□□□ 0.78
PCDH1-205	ENST00000505937	TTLL6	Q8N841	843 aa		19.93	■□□□□ 0.78
PCDH1-205	ENST00000505937	ZNF622	Q969S3	477 aa	Known RBP eCLIP	19.93	■□□□□ 0.78
PCDH1-205	ENST00000505937	N4BP2	Q86UW6	1770 aa	Predicted RBP	19.93	■□□□□ 0.78
PCDH1-205	ENST00000505937	IBTK	Q9P2D0	1353 aa	Predicted RBP	19.92	■□□□□ 0.78
PCDH1-205	ENST00000505937	KIAA1551	Q9HCM1	1747 aa		19.91	■□□□□ 0.78
PCDH1-205	ENST00000505937	DDX58	O95786	925 aa	Known RBP	19.91	■□□□□ 0.78
PCDH1-205	ENST00000505937	TCIRG1	Q13488	830 aa		19.91	■□□□□ 0.78
PCDH1-205	ENST00000505937	ARHGAP27	Q6ZUM4	889 aa		19.91	■□□□□ 0.78
PCDH1-205	ENST00000505937	UBN2	Q6ZU65	1347 aa		19.91	■□□□□ 0.78
PCDH1-205	ENST00000505937	SUSD4	Q5VX71	490 aa		19.9	■□□□□ 0.78
PCDH1-205	ENST00000505937	RIC3	Q7Z5B4	369 aa		19.9	■□□□□ 0.78
PCDH1-205	ENST00000505937	MIER1	Q8N108	512 aa		19.9	■□□□□ 0.78
PCDH1-205	ENST00000505937	CNKSR1	Q969H4	720 aa		19.9	■□□□□ 0.78
PCDH1-205	ENST00000505937	MASTL	Q96GX5	879 aa		19.9	■□□□□ 0.78
PCDH1-205	ENST00000505937	UTP14A	Q9BVJ6	771 aa	Known RBP	19.9	■□□□□ 0.78
PCDH1-205	ENST00000505937	STYK1	Q6J9G0	422 aa		19.89	■□□□□ 0.77
PCDH1-205	ENST00000505937	NUTM1	Q86Y26	1132 aa		19.89	■□□□□ 0.77
PCDH1-205	ENST00000505937	RNF123	Q5XPI4	1314 aa		19.88	■□□□□ 0.77
PCDH1-205	ENST00000505937	SRGN	P10124	158 aa		19.88	■□□□□ 0.77
PCDH1-205	ENST00000505937	NPR1	P16066	1061 aa		19.88	■□□□□ 0.77
PCDH1-205	ENST00000505937	EXOSC9	Q06265	439 aa	Known RBP	19.88	■□□□□ 0.77
PCDH1-205	ENST00000505937	NUP98	P52948	1817 aa		19.88	■□□□□ 0.77
PCDH1-205	ENST00000505937	ZNF521	Q96K83	1311 aa		19.87	■□□□□ 0.77
PCDH1-205	ENST00000505937	NTSR2	O95665	410 aa		19.87	■□□□□ 0.77
PCDH1-205	ENST00000505937	ERFE	Q4G0M1	354 aa		19.87	■□□□□ 0.77
PCDH1-205	ENST00000505937	NLRP10	Q86W26	655 aa		19.87	■□□□□ 0.77
PCDH1-205	ENST00000505937	PHAX	Q9H814	394 aa	Known RBP	19.87	■□□□□ 0.77
PCDH1-205	ENST00000505937	CHD4	Q14839	1912 aa		19.86	■□□□□ 0.77
PCDH1-205	ENST00000505937	KLRG2	A4D1S0	409 aa	Predicted RBP	19.86	■□□□□ 0.77
PCDH1-205	ENST00000505937		E9PSI1	815 aa		19.86	■□□□□ 0.77
PCDH1-205	ENST00000505937	SPINK5	Q9NQ38	1064 aa	Predicted RBP	19.86	■□□□□ 0.77
PCDH1-205	ENST00000505937	TRMT112	Q9UI30	125 aa	Known RBP	19.86	■□□□□ 0.77
PCDH1-205	ENST00000505937	TCERG1	O14776	1098 aa	Known RBP	19.85	■□□□□ 0.77
PCDH1-205	ENST00000505937	SLC4A2	P04920	1241 aa		19.85	■□□□□ 0.77
PCDH1-205	ENST00000505937	ABCC12	Q96J65	1359 aa		19.84	■□□□□ 0.77
PCDH1-205	ENST00000505937	SH3TC1	Q8TE82	1336 aa		19.84	■□□□□ 0.77

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