RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	TCERG1	O14776	1098 aa	Known RBP	12.7	□□□□□ -0.38
CALD1-223	ENST00000496024	SERPINB2	P05120	415 aa		12.7	□□□□□ -0.38
CALD1-223	ENST00000496024	HOXB7	P09629	217 aa		12.7	□□□□□ -0.38
CALD1-223	ENST00000496024	XAGE3	Q8WTP9	111 aa		12.7	□□□□□ -0.38
CALD1-223	ENST00000496024	SETDB2	Q96T68	719 aa		12.7	□□□□□ -0.38
CALD1-223	ENST00000496024	DDX21	Q9NR30	783 aa	Known RBP eCLIP	12.7	□□□□□ -0.38
CALD1-223	ENST00000496024	ZNF652	Q9Y2D9	606 aa		12.7	□□□□□ -0.38
CALD1-223	ENST00000496024	CD2AP	Q9Y5K6	639 aa		12.7	□□□□□ -0.38
CALD1-223	ENST00000496024	MAP3K15	Q6ZN16	1313 aa		12.69	□□□□□ -0.38
CALD1-223	ENST00000496024	FAM177B	A6PVY3	158 aa		12.69	□□□□□ -0.38
CALD1-223	ENST00000496024	NPHP1	O15259	732 aa		12.69	□□□□□ -0.38
CALD1-223	ENST00000496024	GOLGA2	Q08379	1002 aa		12.69	□□□□□ -0.38
CALD1-223	ENST00000496024	COPS6	Q7L5N1	327 aa		12.69	□□□□□ -0.38
CALD1-223	ENST00000496024	CCDC24	Q8N4L8	307 aa		12.69	□□□□□ -0.38
CALD1-223	ENST00000496024	NUP98	P52948	1817 aa		12.69	□□□□□ -0.38
CALD1-223	ENST00000496024	DCAF8L1	A6NGE4	600 aa		12.68	□□□□□ -0.38
CALD1-223	ENST00000496024	EXOSC9	Q06265	439 aa	Known RBP	12.68	□□□□□ -0.38
CALD1-223	ENST00000496024	TWISTNB	Q3B726	338 aa	Predicted RBP	12.68	□□□□□ -0.38
CALD1-223	ENST00000496024	CLEC4G	Q6UXB4	293 aa		12.68	□□□□□ -0.38
CALD1-223	ENST00000496024	LRP10	Q7Z4F1	713 aa		12.68	□□□□□ -0.38
CALD1-223	ENST00000496024	MYH16	Q9H6N6	1097 aa		12.68	□□□□□ -0.38
CALD1-223	ENST00000496024	DBF4	Q9UBU7	674 aa	Predicted RBP	12.68	□□□□□ -0.38
CALD1-223	ENST00000496024	NIP7	Q9Y221	180 aa	Known RBP eCLIP	12.68	□□□□□ -0.38
CALD1-223	ENST00000496024	ZNF521	Q96K83	1311 aa		12.67	□□□□□ -0.38
CALD1-223	ENST00000496024	N4BP2	Q86UW6	1770 aa	Predicted RBP	12.67	□□□□□ -0.38
CALD1-223	ENST00000496024		A0A0G2JLW4	131 aa		12.67	□□□□□ -0.38
CALD1-223	ENST00000496024	ERVV-1	B6SEH8	477 aa		12.67	□□□□□ -0.38
CALD1-223	ENST00000496024	GPT	P24298	496 aa		12.67	□□□□□ -0.38
CALD1-223	ENST00000496024	GPR162	Q16538	588 aa		12.67	□□□□□ -0.38
CALD1-223	ENST00000496024	CCDC30	Q5VVM6	783 aa		12.67	□□□□□ -0.38
CALD1-223	ENST00000496024	HYPK	Q9NX55	129 aa		12.67	□□□□□ -0.38
CALD1-223	ENST00000496024	CARMIL3	Q8ND23	1372 aa		12.67	□□□□□ -0.38
CALD1-223	ENST00000496024	C10orf71	Q711Q0	1435 aa		12.66	□□□□□ -0.38
CALD1-223	ENST00000496024	NBPF5P	Q86XG9	351 aa	Predicted RBP	12.66	□□□□□ -0.38
CALD1-223	ENST00000496024	PHAX	Q9H814	394 aa	Known RBP	12.66	□□□□□ -0.38
CALD1-223	ENST00000496024	KIF13B	Q9NQT8	1826 aa		12.65	□□□□□ -0.38
CALD1-223	ENST00000496024	DPEP1	P16444	411 aa		12.65	□□□□□ -0.38
CALD1-223	ENST00000496024	CHRNA5	P30532	468 aa		12.65	□□□□□ -0.38
CALD1-223	ENST00000496024	HNRNPU	Q00839	825 aa	Known RBP eCLIP	12.65	□□□□□ -0.38
CALD1-223	ENST00000496024	PRR5L	Q6MZQ0	368 aa		12.65	□□□□□ -0.38
CALD1-223	ENST00000496024	GIGYF2	Q6Y7W6	1299 aa	Known RBP	12.65	□□□□□ -0.38
CALD1-223	ENST00000496024	CNBD1	Q8NA66	436 aa		12.65	□□□□□ -0.38
CALD1-223	ENST00000496024	ZNF428	Q96B54	188 aa		12.65	□□□□□ -0.38
CALD1-223	ENST00000496024	CDCA7L	Q96GN5	454 aa		12.65	□□□□□ -0.38
CALD1-223	ENST00000496024	STK31	Q9BXU1	1019 aa		12.65	□□□□□ -0.38
CALD1-223	ENST00000496024		E9PSI1	815 aa		12.64	□□□□□ -0.39
CALD1-223	ENST00000496024	VAMP4	O75379	141 aa		12.64	□□□□□ -0.39
CALD1-223	ENST00000496024	TGFB2	P61812	414 aa		12.64	□□□□□ -0.39
CALD1-223	ENST00000496024	CHMP4A	Q9BY43	222 aa		12.64	□□□□□ -0.39
CALD1-223	ENST00000496024	PXDNL	A1KZ92	1463 aa		12.64	□□□□□ -0.39
CALD1-223	ENST00000496024	NRXN2	Q9P2S2	1712 aa		12.63	□□□□□ -0.39
CALD1-223	ENST00000496024	RGL2	O15211	777 aa		12.63	□□□□□ -0.39
CALD1-223	ENST00000496024	GTF2E1	P29083	439 aa	Predicted RBP	12.63	□□□□□ -0.39
CALD1-223	ENST00000496024	ST5	P78524	1137 aa		12.63	□□□□□ -0.39
CALD1-223	ENST00000496024	SLFN5	Q08AF3	891 aa		12.63	□□□□□ -0.39
CALD1-223	ENST00000496024	ANKRD13D	Q6ZTN6	518 aa		12.63	□□□□□ -0.39
CALD1-223	ENST00000496024	GOLGB1	Q14789	3259 aa	Known RBP	12.63	□□□□□ -0.39
CALD1-223	ENST00000496024	UBN2	Q6ZU65	1347 aa		12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	SLC4A2	P04920	1241 aa		12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	YBX3	P16989	372 aa	Known RBP eCLIP	12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	SUSD4	Q5VX71	490 aa		12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	TPTE2	Q6XPS3	522 aa		12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	G2E3	Q7L622	706 aa		12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	RIC3	Q7Z5B4	369 aa		12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	NUTM1	Q86Y26	1132 aa		12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	C2CD5	Q86YS7	1000 aa		12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	ZNF34	Q8IZ26	560 aa		12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	PLBD2	Q8NHP8	589 aa		12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	KIAA1551	Q9HCM1	1747 aa		12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	ATP10D	Q9P241	1426 aa		12.62	□□□□□ -0.39
CALD1-223	ENST00000496024	ANKRD31	Q8N7Z5	1873 aa		12.61	□□□□□ -0.39
CALD1-223	ENST00000496024	ATP5J2-PTCD1	G3V325	749 aa		12.61	□□□□□ -0.39
CALD1-223	ENST00000496024	TCIRG1	Q13488	830 aa		12.61	□□□□□ -0.39
CALD1-223	ENST00000496024	HSP90AB3P	Q58FF7	597 aa		12.61	□□□□□ -0.39
CALD1-223	ENST00000496024	NYX	Q9GZU5	481 aa		12.61	□□□□□ -0.39
CALD1-223	ENST00000496024	BCS1L	Q9Y276	419 aa		12.61	□□□□□ -0.39
CALD1-223	ENST00000496024		H0YIN7	160 aa		12.6	□□□□□ -0.39
CALD1-223	ENST00000496024	DDX58	O95786	925 aa	Known RBP	12.6	□□□□□ -0.39
CALD1-223	ENST00000496024	KCNA3	P22001	575 aa		12.6	□□□□□ -0.39
CALD1-223	ENST00000496024	PDE6B	P35913	854 aa		12.6	□□□□□ -0.39
CALD1-223	ENST00000496024	ERFE	Q4G0M1	354 aa		12.6	□□□□□ -0.39
CALD1-223	ENST00000496024	PPP1R42	Q7Z4L9	355 aa		12.6	□□□□□ -0.39
CALD1-223	ENST00000496024	ZNF622	Q969S3	477 aa	Known RBP eCLIP	12.6	□□□□□ -0.39
CALD1-223	ENST00000496024	BRIP1	Q9BX63	1249 aa		12.6	□□□□□ -0.39
CALD1-223	ENST00000496024	PIM2	Q9P1W9	311 aa		12.6	□□□□□ -0.39
CALD1-223	ENST00000496024	ANKRD36C	Q5JPF3	1778 aa		12.6	□□□□□ -0.39
CALD1-223	ENST00000496024	ARFGEF2	Q9Y6D5	1785 aa		12.59	□□□□□ -0.39
CALD1-223	ENST00000496024	PARP10	Q53GL7	1025 aa		12.59	□□□□□ -0.39
CALD1-223	ENST00000496024	NLRP10	Q86W26	655 aa		12.59	□□□□□ -0.39
CALD1-223	ENST00000496024	MYD88	Q99836	296 aa		12.59	□□□□□ -0.39
CALD1-223	ENST00000496024	UTP14A	Q9BVJ6	771 aa	Known RBP	12.59	□□□□□ -0.39
CALD1-223	ENST00000496024	UTRN	P46939	3433 aa		12.59	□□□□□ -0.39
CALD1-223	ENST00000496024	CACNA1F	O60840	1977 aa		12.59	□□□□□ -0.39
CALD1-223	ENST00000496024	ABCC12	Q96J65	1359 aa		12.58	□□□□□ -0.4
CALD1-223	ENST00000496024	PI4KAP2	A4QPH2	592 aa		12.58	□□□□□ -0.4
CALD1-223	ENST00000496024	NTSR2	O95665	410 aa		12.58	□□□□□ -0.4
CALD1-223	ENST00000496024	FLII	Q13045	1269 aa		12.58	□□□□□ -0.4
CALD1-223	ENST00000496024	FKBP5	Q13451	457 aa	Predicted RBP	12.58	□□□□□ -0.4
CALD1-223	ENST00000496024	DALRD3	Q5D0E6	543 aa	Known RBP	12.58	□□□□□ -0.4
CALD1-223	ENST00000496024	RTL5	Q5HYW3	569 aa	Predicted RBP	12.58	□□□□□ -0.4

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms