RNA–Protein interactions for RNA: ENST00000495835.1

HLA-C-209, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,073 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-209ENST00000495835 NPHP1O15259 732 aa31.74■■■□□ 2.67
HLA-C-209ENST00000495835 NEUROD2Q15784 382 aa31.74■■■□□ 2.67
HLA-C-209ENST00000495835 TRIM35Q9UPQ4 493 aa31.73■■■□□ 2.67
HLA-C-209ENST00000495835 RRP7AQ9Y3A4 280 aaKnown RBP31.73■■■□□ 2.67
HLA-C-209ENST00000495835 TPTE2Q6XPS3 522 aa31.72■■■□□ 2.67
HLA-C-209ENST00000495835 NBPF5PQ86XG9 351 aaPredicted RBP31.72■■■□□ 2.67
HLA-C-209ENST00000495835 CHL1O00533 1208 aa31.71■■■□□ 2.67
HLA-C-209ENST00000495835 NIP7Q9Y221 180 aaKnown RBP eCLIP31.71■■■□□ 2.67
HLA-C-209ENST00000495835 C9orf131Q5VYM1 1079 aa31.69■■■□□ 2.66
HLA-C-209ENST00000495835 KIF6Q6ZMV9 814 aa31.69■■■□□ 2.66
HLA-C-209ENST00000495835 SBF1O95248 1867 aa31.69■■■□□ 2.66
HLA-C-209ENST00000495835 MAP3K15Q6ZN16 1313 aa31.69■■■□□ 2.66
HLA-C-209ENST00000495835 HLFQ16534 295 aa31.68■■■□□ 2.66
HLA-C-209ENST00000495835 NUP98P52948 1817 aa31.68■■■□□ 2.66
HLA-C-209ENST00000495835 ZNF316A6NFI3 1004 aaPredicted RBP31.67■■■□□ 2.66
HLA-C-209ENST00000495835 MYL6BP14649 208 aa31.67■■■□□ 2.66
HLA-C-209ENST00000495835 STYK1Q6J9G0 422 aa31.67■■■□□ 2.66
HLA-C-209ENST00000495835 ZNF622Q969S3 477 aaKnown RBP eCLIP31.67■■■□□ 2.66
HLA-C-209ENST00000495835 SRGNP10124 158 aa31.66■■■□□ 2.66
HLA-C-209ENST00000495835 CNKSR1Q969H4 720 aa31.66■■■□□ 2.66
HLA-C-209ENST00000495835 KLRG2A4D1S0 409 aaPredicted RBP31.65■■■□□ 2.66
HLA-C-209ENST00000495835 CCDC24Q8N4L8 307 aa31.65■■■□□ 2.66
HLA-C-209ENST00000495835 NGEFQ8N5V2 710 aa31.65■■■□□ 2.66
HLA-C-209ENST00000495835 ZNF526Q8TF50 670 aaPredicted RBP31.65■■■□□ 2.66
HLA-C-209ENST00000495835 MASTLQ96GX5 879 aa31.65■■■□□ 2.66
HLA-C-209ENST00000495835 COL11A2P13942 1736 aaPredicted RBP31.65■■■□□ 2.66
HLA-C-209ENST00000495835 TTLL7Q6ZT98 887 aa31.64■■■□□ 2.66
HLA-C-209ENST00000495835 NYXQ9GZU5 481 aa31.64■■■□□ 2.66
HLA-C-209ENST00000495835 ZC3H4Q9UPT8 1303 aaKnown RBP31.64■■■□□ 2.66
HLA-C-209ENST00000495835 PDIA6Q15084 440 aa31.63■■■□□ 2.65
HLA-C-209ENST00000495835 CFAP44Q96MT7 982 aa31.63■■■□□ 2.65
HLA-C-209ENST00000495835 RNF181Q9P0P0 153 aa31.63■■■□□ 2.65
HLA-C-209ENST00000495835 EIF2S2P20042 333 aaKnown RBP31.62■■■□□ 2.65
HLA-C-209ENST00000495835 LRP10Q7Z4F1 713 aa31.62■■■□□ 2.65
HLA-C-209ENST00000495835 HOXB7P09629 217 aa31.61■■■□□ 2.65
HLA-C-209ENST00000495835 LMNB1P20700 586 aa31.61■■■□□ 2.65
HLA-C-209ENST00000495835 CALD1Q05682 793 aaKnown RBP31.61■■■□□ 2.65
HLA-C-209ENST00000495835 GIGYF2Q6Y7W6 1299 aaKnown RBP31.61■■■□□ 2.65
HLA-C-209ENST00000495835 ARFGEF2Q9Y6D5 1785 aa31.61■■■□□ 2.65
HLA-C-209ENST00000495835 IBTKQ9P2D0 1353 aaPredicted RBP31.6■■■□□ 2.65
HLA-C-209ENST00000495835 APAF1O14727 1248 aa31.59■■■□□ 2.65
HLA-C-209ENST00000495835 NPR1P16066 1061 aa31.59■■■□□ 2.65
HLA-C-209ENST00000495835 GTF2E1P29083 439 aaPredicted RBP31.59■■■□□ 2.65
HLA-C-209ENST00000495835 SOGA3Q5TF21 947 aa31.59■■■□□ 2.65
HLA-C-209ENST00000495835 LAS1LQ9Y4W2 734 aaKnown RBP31.59■■■□□ 2.65
HLA-C-209ENST00000495835 ZNF34Q8IZ26 560 aa31.58■■■□□ 2.65
HLA-C-209ENST00000495835 KIF3CO14782 793 aa31.57■■■□□ 2.64
HLA-C-209ENST00000495835 ZBTB3Q9H5J0 574 aa31.57■■■□□ 2.64
HLA-C-209ENST00000495835 DDX21Q9NR30 783 aaKnown RBP eCLIP31.57■■■□□ 2.64
HLA-C-209ENST00000495835 KDM2BQ8NHM5 1336 aa31.56■■■□□ 2.64
HLA-C-209ENST00000495835 C21orf2O43822 256 aa31.56■■■□□ 2.64
HLA-C-209ENST00000495835 FER1L6Q2WGJ9 1857 aa31.56■■■□□ 2.64
HLA-C-209ENST00000495835 SLX4Q8IY92 1834 aa31.55■■■□□ 2.64
HLA-C-209ENST00000495835 ZNF853P0CG23 659 aa31.55■■■□□ 2.64
HLA-C-209ENST00000495835 RASSF7Q02833 373 aa31.55■■■□□ 2.64
HLA-C-209ENST00000495835 PARP10Q53GL7 1025 aa31.55■■■□□ 2.64
HLA-C-209ENST00000495835 PRPF40BQ6NWY9 871 aaKnown RBP31.55■■■□□ 2.64
HLA-C-209ENST00000495835 RIC1Q4ADV7 1423 aa31.55■■■□□ 2.64
HLA-C-209ENST00000495835 LTBP3Q9NS15 1303 aa31.54■■■□□ 2.64
HLA-C-209ENST00000495835 FAM177BA6PVY3 158 aa31.54■■■□□ 2.64
HLA-C-209ENST00000495835 NFKBIEO00221 500 aa31.54■■■□□ 2.64
HLA-C-209ENST00000495835 GNAI1P63096 354 aa31.54■■■□□ 2.64
HLA-C-209ENST00000495835 IFT57Q9NWB7 429 aa31.54■■■□□ 2.64
HLA-C-209ENST00000495835 CCDC88AQ3V6T2 1871 aa31.54■■■□□ 2.64
HLA-C-209ENST00000495835 ALDH1B1P30837 517 aa31.53■■■□□ 2.64
HLA-C-209ENST00000495835 ANP32CO43423 234 aa31.52■■■□□ 2.64
HLA-C-209ENST00000495835 PROSER3Q2NL68 480 aa31.52■■■□□ 2.64
HLA-C-209ENST00000495835 HSP90AB3PQ58FF7 597 aa31.52■■■□□ 2.64
HLA-C-209ENST00000495835 PPP1R42Q7Z4L9 355 aa31.52■■■□□ 2.64
HLA-C-209ENST00000495835 CACNA1SQ13698 1873 aa31.51■■■□□ 2.63
HLA-C-209ENST00000495835 SENP3-EIF4A1A0A087X0R7 540 aa31.51■■■□□ 2.63
HLA-C-209ENST00000495835 COPS6Q7L5N1 327 aa31.51■■■□□ 2.63
HLA-C-209ENST00000495835 UBN2Q6ZU65 1347 aa31.5■■■□□ 2.63
HLA-C-209ENST00000495835 KRT24Q2M2I5 525 aa31.5■■■□□ 2.63
HLA-C-209ENST00000495835 CRY2Q49AN0 593 aa31.5■■■□□ 2.63
HLA-C-209ENST00000495835 C7orf43Q8WVR3 580 aa31.5■■■□□ 2.63
HLA-C-209ENST00000495835 MBIPQ9NS73 344 aa31.5■■■□□ 2.63
HLA-C-209ENST00000495835 DBF4Q9UBU7 674 aaPredicted RBP31.5■■■□□ 2.63
HLA-C-209ENST00000495835 DICER1Q9UPY3 1922 aaKnown RBP31.49■■■□□ 2.63
HLA-C-209ENST00000495835 TOMM70O94826 608 aa31.49■■■□□ 2.63
HLA-C-209ENST00000495835 GPTP24298 496 aa31.49■■■□□ 2.63
HLA-C-209ENST00000495835 PRELPP51888 382 aa31.49■■■□□ 2.63
HLA-C-209ENST00000495835 NCBP3Q53F19 620 aaKnown RBP31.49■■■□□ 2.63
HLA-C-209ENST00000495835 HDGFL1Q5TGJ6 251 aa31.49■■■□□ 2.63
HLA-C-209ENST00000495835 SUSD4Q5VX71 490 aa31.49■■■□□ 2.63
HLA-C-209ENST00000495835 RNF123Q5XPI4 1314 aa31.49■■■□□ 2.63
HLA-C-209ENST00000495835 ANXA1P04083 346 aa31.48■■■□□ 2.63
HLA-C-209ENST00000495835 ERFEQ4G0M1 354 aa31.48■■■□□ 2.63
HLA-C-209ENST00000495835 CCDC184Q52MB2 194 aa31.48■■■□□ 2.63
HLA-C-209ENST00000495835 NECTIN2Q92692 538 aa31.48■■■□□ 2.63
HLA-C-209ENST00000495835 CHMP4AQ9BY43 222 aa31.48■■■□□ 2.63
HLA-C-209ENST00000495835 TAOK3Q9H2K8 898 aa31.48■■■□□ 2.63
HLA-C-209ENST00000495835 NTSR2O95665 410 aa31.47■■■□□ 2.63
HLA-C-209ENST00000495835 NUTM1Q86Y26 1132 aa31.47■■■□□ 2.63
HLA-C-209ENST00000495835 XAGE3Q8WTP9 111 aa31.47■■■□□ 2.63
HLA-C-209ENST00000495835 NMRK2Q9NPI5 230 aa31.47■■■□□ 2.63
HLA-C-209ENST00000495835 ZNF219Q9P2Y4 722 aaPredicted RBP31.47■■■□□ 2.63
HLA-C-209ENST00000495835 TNRC6CQ9HCJ0 1690 aaKnown RBP31.46■■■□□ 2.63
HLA-C-209ENST00000495835 CCDC27Q2M243 656 aa31.46■■■□□ 2.63
HLA-C-209ENST00000495835 DUSP27Q5VZP5 1158 aa31.46■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms