RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 ANP32CO43423 234 aa43.41■■■■■ 4.54
CBX4-203ENST00000494546 HLFQ16534 295 aa43.41■■■■■ 4.54
CBX4-203ENST00000494546 NIP7Q9Y221 180 aaKnown RBP eCLIP43.41■■■■■ 4.54
CBX4-203ENST00000494546 RGL2O15211 777 aa43.4■■■■■ 4.54
CBX4-203ENST00000494546 ST5P78524 1137 aa43.4■■■■■ 4.54
CBX4-203ENST00000494546 NBPF5PQ86XG9 351 aaPredicted RBP43.4■■■■■ 4.54
CBX4-203ENST00000494546 ARFGEF1Q9Y6D6 1849 aa43.4■■■■■ 4.54
CBX4-203ENST00000494546 PDE6BP35913 854 aa43.39■■■■■ 4.54
CBX4-203ENST00000494546 KIF6Q6ZMV9 814 aa43.39■■■■■ 4.54
CBX4-203ENST00000494546 ERBB4Q15303 1308 aa43.39■■■■■ 4.54
CBX4-203ENST00000494546 ADCY9O60503 1353 aa43.39■■■■■ 4.54
CBX4-203ENST00000494546 TTLL7Q6ZT98 887 aa43.38■■■■■ 4.53
CBX4-203ENST00000494546 TTLL6Q8N841 843 aa43.36■■■■■ 4.53
CBX4-203ENST00000494546 ANKRD31Q8N7Z5 1873 aa43.36■■■■■ 4.53
CBX4-203ENST00000494546 KRT24Q2M2I5 525 aa43.35■■■■■ 4.53
CBX4-203ENST00000494546 MAP3K15Q6ZN16 1313 aa43.35■■■■■ 4.53
CBX4-203ENST00000494546 ERVV-1B6SEH8 477 aa43.34■■■■■ 4.53
CBX4-203ENST00000494546 NECTIN2Q92692 538 aa43.34■■■■■ 4.53
CBX4-203ENST00000494546 PDZRN3Q9UPQ7 1066 aa43.34■■■■■ 4.53
CBX4-203ENST00000494546 FAM177BA6PVY3 158 aa43.33■■■■■ 4.53
CBX4-203ENST00000494546 ZNF622Q969S3 477 aaKnown RBP eCLIP43.33■■■■■ 4.533e-9■■■■□ 19.9
CBX4-203ENST00000494546 DLEC1Q9Y238 1755 aa43.33■■■■■ 4.53
CBX4-203ENST00000494546 ZNF526Q8TF50 670 aaPredicted RBP43.32■■■■■ 4.53
CBX4-203ENST00000494546 ZBTB3Q9H5J0 574 aa43.32■■■■■ 4.53
CBX4-203ENST00000494546 CFAP44Q96MT7 982 aa43.31■■■■■ 4.52
CBX4-203ENST00000494546 MRS2Q9HD23 443 aa43.31■■■■■ 4.52
CBX4-203ENST00000494546 PDIA6Q15084 440 aa43.3■■■■■ 4.52
CBX4-203ENST00000494546 TPTE2Q6XPS3 522 aa43.3■■■■■ 4.52
CBX4-203ENST00000494546 ANXA1P04083 346 aa43.29■■■■■ 4.52
CBX4-203ENST00000494546 PROSER3Q2NL68 480 aa43.29■■■■■ 4.52
CBX4-203ENST00000494546 GPBP1L1Q9HC44 474 aaPredicted RBP43.28■■■■■ 4.52
CBX4-203ENST00000494546 LRP10Q7Z4F1 713 aa43.26■■■■■ 4.52
CBX4-203ENST00000494546 MBIPQ9NS73 344 aa43.26■■■■■ 4.52
CBX4-203ENST00000494546 CALD1Q05682 793 aaKnown RBP43.25■■■■■ 4.51
CBX4-203ENST00000494546 C9orf131Q5VYM1 1079 aa43.25■■■■■ 4.51
CBX4-203ENST00000494546 COL11A2P13942 1736 aaPredicted RBP43.25■■■■■ 4.51
CBX4-203ENST00000494546 GPTP24298 496 aa43.23■■■■■ 4.51
CBX4-203ENST00000494546 GTF2E1P29083 439 aaPredicted RBP43.23■■■■■ 4.51
CBX4-203ENST00000494546 NUP98P52948 1817 aa43.22■■■■■ 4.51
CBX4-203ENST00000494546 SENP3-EIF4A1A0A087X0R7 540 aa43.21■■■■■ 4.51
CBX4-203ENST00000494546 ZNF853P0CG23 659 aa43.21■■■■■ 4.51
CBX4-203ENST00000494546 SRGNP10124 158 aa43.21■■■■■ 4.51
CBX4-203ENST00000494546 IFT57Q9NWB7 429 aa43.21■■■■■ 4.51
CBX4-203ENST00000494546 GNAI1P63096 354 aa43.2■■■■■ 4.51
CBX4-203ENST00000494546 HDGFL1Q5TGJ6 251 aa43.2■■■■■ 4.51
CBX4-203ENST00000494546 ZNF219Q9P2Y4 722 aaPredicted RBP43.2■■■■■ 4.51
CBX4-203ENST00000494546 RASSF7Q02833 373 aa43.19■■■■■ 4.5
CBX4-203ENST00000494546 STYK1Q6J9G0 422 aa43.19■■■■■ 4.5
CBX4-203ENST00000494546 GIGYF2Q6Y7W6 1299 aaKnown RBP43.19■■■■■ 4.5
CBX4-203ENST00000494546 CNKSR1Q969H4 720 aa43.19■■■■■ 4.5
CBX4-203ENST00000494546 MASTLQ96GX5 879 aa43.19■■■■■ 4.5
CBX4-203ENST00000494546 NYXQ9GZU5 481 aa43.19■■■■■ 4.5
CBX4-203ENST00000494546 RNF181Q9P0P0 153 aa43.19■■■■■ 4.5
CBX4-203ENST00000494546 HOXB7P09629 217 aa43.18■■■■■ 4.5
CBX4-203ENST00000494546 AIMP1Q12904 312 aaKnown RBP43.18■■■■■ 4.5
CBX4-203ENST00000494546 DUSP27Q5VZP5 1158 aa43.18■■■■■ 4.5
CBX4-203ENST00000494546 DDX21Q9NR30 783 aaKnown RBP eCLIP43.18■■■■■ 4.5
CBX4-203ENST00000494546 COPS6Q7L5N1 327 aa43.17■■■■■ 4.5
CBX4-203ENST00000494546 XAGE3Q8WTP9 111 aa43.17■■■■■ 4.5
CBX4-203ENST00000494546 CHPF2Q9P2E5 772 aa43.17■■■■■ 4.5
CBX4-203ENST00000494546 UBN2Q6ZU65 1347 aa43.17■■■■■ 4.5
CBX4-203ENST00000494546 C21orf2O43822 256 aa43.16■■■■■ 4.5
CBX4-203ENST00000494546 C1QTNF8P60827 252 aa43.16■■■■■ 4.5
CBX4-203ENST00000494546 NUTM1Q86Y26 1132 aa43.16■■■■■ 4.5
CBX4-203ENST00000494546 ZNF34Q8IZ26 560 aa43.16■■■■■ 4.5
CBX4-203ENST00000494546 SUSD4Q5VX71 490 aa43.13■■■■■ 4.49
CBX4-203ENST00000494546 KLRG2A4D1S0 409 aaPredicted RBP43.12■■■■■ 4.49
CBX4-203ENST00000494546 NPR1P16066 1061 aa43.12■■■■■ 4.49
CBX4-203ENST00000494546 PRPF40BQ6NWY9 871 aaKnown RBP43.12■■■■■ 4.49
CBX4-203ENST00000494546 ERFEQ4G0M1 354 aa43.11■■■■■ 4.49
CBX4-203ENST00000494546 ABCC12Q96J65 1359 aa43.1■■■■■ 4.49
CBX4-203ENST00000494546 DBF4Q9UBU7 674 aaPredicted RBP43.09■■■■■ 4.49
CBX4-203ENST00000494546 IBTKQ9P2D0 1353 aaPredicted RBP43.08■■■■■ 4.49
CBX4-203ENST00000494546 NFKBIEO00221 500 aa43.08■■■■■ 4.49
CBX4-203ENST00000494546 ELL2O00472 640 aaPredicted RBP43.08■■■■■ 4.49
CBX4-203ENST00000494546 LMNB1P20700 586 aa43.08■■■■■ 4.49
CBX4-203ENST00000494546 PARP10Q53GL7 1025 aa43.07■■■■■ 4.49
CBX4-203ENST00000494546 PPP1R42Q7Z4L9 355 aa43.06■■■■■ 4.48
CBX4-203ENST00000494546 SBF1O95248 1867 aa43.06■■■■■ 4.48
CBX4-203ENST00000494546 SLX4Q8IY92 1834 aa43.06■■■■■ 4.48
CBX4-203ENST00000494546 PRELPP51888 382 aa43.05■■■■■ 4.48
CBX4-203ENST00000494546 CCDC27Q2M243 656 aa43.05■■■■■ 4.48
CBX4-203ENST00000494546 CACNA1SQ13698 1873 aa43.04■■■■■ 4.48
CBX4-203ENST00000494546 NTSR2O95665 410 aa43.04■■■■■ 4.48
CBX4-203ENST00000494546 HSP90AB3PQ58FF7 597 aa43.04■■■■■ 4.48
CBX4-203ENST00000494546 TNRC6CQ9HCJ0 1690 aaKnown RBP43.03■■■■■ 4.48
CBX4-203ENST00000494546 WWC1Q8IX03 1113 aa43.03■■■■■ 4.48
CBX4-203ENST00000494546 C8orf58Q8NAV2 365 aa43.02■■■■■ 4.48
CBX4-203ENST00000494546 SOGA3Q5TF21 947 aa43.01■■■■■ 4.48
CBX4-203ENST00000494546 UTP14AQ9BVJ6 771 aaKnown RBP43.01■■■■■ 4.48
CBX4-203ENST00000494546 HYPKQ9NX55 129 aa43.01■■■■■ 4.48
CBX4-203ENST00000494546 ARFGEF2Q9Y6D5 1785 aa43■■■■■ 4.47
CBX4-203ENST00000494546 TCIRG1Q13488 830 aa42.99■■■■■ 4.47
CBX4-203ENST00000494546 KIF3CO14782 793 aa42.98■■■■■ 4.47
CBX4-203ENST00000494546 ALDH1B1P30837 517 aa42.98■■■■■ 4.47
CBX4-203ENST00000494546 CRY2Q49AN0 593 aa42.98■■■■■ 4.47
CBX4-203ENST00000494546 PLBD2Q8NHP8 589 aa42.98■■■■■ 4.47
CBX4-203ENST00000494546 TSR2Q969E8 191 aaKnown RBP42.98■■■■■ 4.47
CBX4-203ENST00000494546 TAOK3Q9H2K8 898 aa42.98■■■■■ 4.47
CBX4-203ENST00000494546 ANKRD13DQ6ZTN6 518 aa42.97■■■■■ 4.47
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms