RNA–Protein interactions for RNA: ENST00000493256.1

LYSMD4-208, Transcript of LysM domain containing 4, humanhuman

TSL 3

Gene LYSMD4, Length 880 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4-208ENST00000493256 KDM2BQ8NHM5 1336 aa29.28■■■□□ 2.28
LYSMD4-208ENST00000493256 NFKBIEO00221 500 aa29.28■■■□□ 2.28
LYSMD4-208ENST00000493256 LMNB1P20700 586 aa29.28■■■□□ 2.28
LYSMD4-208ENST00000493256 EIF4A1P60842 406 aaKnown RBP29.27■■■□□ 2.28
LYSMD4-208ENST00000493256 NBPF5PQ86XG9 351 aaPredicted RBP29.27■■■□□ 2.28
LYSMD4-208ENST00000493256 RGL2O15211 777 aa29.26■■■□□ 2.27
LYSMD4-208ENST00000493256 CCDC88AQ3V6T2 1871 aa29.25■■■□□ 2.27
LYSMD4-208ENST00000493256 ZC3H4Q9UPT8 1303 aaKnown RBP29.25■■■□□ 2.27
LYSMD4-208ENST00000493256 ZNF219Q9P2Y4 722 aaPredicted RBP29.25■■■□□ 2.27
LYSMD4-208ENST00000493256 C21orf2O43822 256 aa29.24■■■□□ 2.27
LYSMD4-208ENST00000493256 SRGNP10124 158 aa29.24■■■□□ 2.27
LYSMD4-208ENST00000493256 STYK1Q6J9G0 422 aa29.24■■■□□ 2.27
LYSMD4-208ENST00000493256 NIP7Q9Y221 180 aaKnown RBP eCLIP29.24■■■□□ 2.27
LYSMD4-208ENST00000493256 TNRC6CQ9HCJ0 1690 aaKnown RBP29.24■■■□□ 2.27
LYSMD4-208ENST00000493256 SLX4Q8IY92 1834 aa29.23■■■□□ 2.27
LYSMD4-208ENST00000493256 HLFQ16534 295 aa29.23■■■□□ 2.27
LYSMD4-208ENST00000493256 CACNA1SQ13698 1873 aa29.23■■■□□ 2.27
LYSMD4-208ENST00000493256 TIAM2Q8IVF5 1701 aa29.23■■■□□ 2.27
LYSMD4-208ENST00000493256 CNKSR1Q969H4 720 aa29.22■■■□□ 2.27
LYSMD4-208ENST00000493256 FER1L6Q2WGJ9 1857 aa29.22■■■□□ 2.27
LYSMD4-208ENST00000493256 MYBBP1AQ9BQG0 1328 aaKnown RBP29.21■■■□□ 2.27
LYSMD4-208ENST00000493256 C16orf71Q8IYS4 520 aaPredicted RBP29.21■■■□□ 2.27
LYSMD4-208ENST00000493256 NGEFQ8N5V2 710 aa29.21■■■□□ 2.27
LYSMD4-208ENST00000493256 MASTLQ96GX5 879 aa29.21■■■□□ 2.27
LYSMD4-208ENST00000493256 RRAGCQ9HB90 399 aa29.21■■■□□ 2.27
LYSMD4-208ENST00000493256 ARFGEF2Q9Y6D5 1785 aa29.21■■■□□ 2.27
LYSMD4-208ENST00000493256 RIPK4P57078 832 aa29.2■■■□□ 2.26
LYSMD4-208ENST00000493256 PRPF40BQ6NWY9 871 aaKnown RBP29.2■■■□□ 2.26
LYSMD4-208ENST00000493256 RBM46Q8TBY0 533 aaKnown RBP29.2■■■□□ 2.26
LYSMD4-208ENST00000493256 TPTE2Q6XPS3 522 aa29.19■■■□□ 2.26
LYSMD4-208ENST00000493256 RRP7AQ9Y3A4 280 aaKnown RBP29.19■■■□□ 2.26
LYSMD4-208ENST00000493256 FAM177BA6PVY3 158 aa29.18■■■□□ 2.26
LYSMD4-208ENST00000493256 TSPYL4Q9UJ04 414 aa29.18■■■□□ 2.26
LYSMD4-208ENST00000493256 GLTPD2A6NH11 291 aa29.17■■■□□ 2.26
LYSMD4-208ENST00000493256 TMPOP42166 694 aaKnown RBP29.17■■■□□ 2.26
LYSMD4-208ENST00000493256 NUP98P52948 1817 aa29.16■■■□□ 2.26
LYSMD4-208ENST00000493256 KLRG2A4D1S0 409 aaPredicted RBP29.16■■■□□ 2.26
LYSMD4-208ENST00000493256 MYL6BP14649 208 aa29.16■■■□□ 2.26
LYSMD4-208ENST00000493256 TTLL7Q6ZT98 887 aa29.16■■■□□ 2.26
LYSMD4-208ENST00000493256 MAP3K15Q6ZN16 1313 aa29.16■■■□□ 2.26
LYSMD4-208ENST00000493256 LTBP3Q9NS15 1303 aa29.16■■■□□ 2.26
LYSMD4-208ENST00000493256 ERVV-1B6SEH8 477 aa29.15■■■□□ 2.26
LYSMD4-208ENST00000493256 APLP1P51693 650 aa29.15■■■□□ 2.26
LYSMD4-208ENST00000493256 DICER1Q9UPY3 1922 aaKnown RBP29.15■■■□□ 2.26
LYSMD4-208ENST00000493256 NPR1P16066 1061 aa29.14■■■□□ 2.26
LYSMD4-208ENST00000493256 TAOK3Q9H2K8 898 aa29.14■■■□□ 2.26
LYSMD4-208ENST00000493256 LMOD3Q0VAK6 560 aa29.13■■■□□ 2.25
LYSMD4-208ENST00000493256 KIF6Q6ZMV9 814 aa29.13■■■□□ 2.25
LYSMD4-208ENST00000493256 CCDC146Q8IYE0 955 aa29.13■■■□□ 2.25
LYSMD4-208ENST00000493256 FSTL1Q12841 308 aa29.12■■■□□ 2.25
LYSMD4-208ENST00000493256 SOGA3Q5TF21 947 aa29.12■■■□□ 2.25
LYSMD4-208ENST00000493256 C7orf43Q8WVR3 580 aa29.12■■■□□ 2.25
LYSMD4-208ENST00000493256 ERBB4Q15303 1308 aa29.12■■■□□ 2.25
LYSMD4-208ENST00000493256 ERFEQ4G0M1 354 aa29.11■■■□□ 2.25
LYSMD4-208ENST00000493256 ZBTB3Q9H5J0 574 aa29.11■■■□□ 2.25
LYSMD4-208ENST00000493256 BABAM1Q9NWV8 329 aa29.11■■■□□ 2.25
LYSMD4-208ENST00000493256 GTF2E1P29083 439 aaPredicted RBP29.1■■■□□ 2.25
LYSMD4-208ENST00000493256 ABCC12Q96J65 1359 aa29.1■■■□□ 2.25
LYSMD4-208ENST00000493256 VEGFAP15692 232 aaPredicted RBP29.09■■■□□ 2.25
LYSMD4-208ENST00000493256 NYXQ9GZU5 481 aa29.09■■■□□ 2.25
LYSMD4-208ENST00000493256 GPTP24298 496 aa29.08■■■□□ 2.25
LYSMD4-208ENST00000493256 NEUROD2Q15784 382 aa29.08■■■□□ 2.25
LYSMD4-208ENST00000493256 NUTM1Q86Y26 1132 aa29.08■■■□□ 2.25
LYSMD4-208ENST00000493256 UBN2Q6ZU65 1347 aa29.08■■■□□ 2.25
LYSMD4-208ENST00000493256 EIF2S2P20042 333 aaKnown RBP29.07■■■□□ 2.24
LYSMD4-208ENST00000493256 WDR43Q15061 677 aaKnown RBP eCLIP29.07■■■□□ 2.24
LYSMD4-208ENST00000493256 PDIA6Q15084 440 aa29.07■■■□□ 2.24
LYSMD4-208ENST00000493256 CCDC93Q567U6 631 aa29.07■■■□□ 2.24
LYSMD4-208ENST00000493256 LRP10Q7Z4F1 713 aa29.07■■■□□ 2.24
LYSMD4-208ENST00000493256 WDR90Q96KV7 1748 aa29.06■■■□□ 2.24
LYSMD4-208ENST00000493256 DPY19L2Q6NUT2 758 aa29.06■■■□□ 2.24
LYSMD4-208ENST00000493256 RUNDC1Q96C34 613 aa29.06■■■□□ 2.24
LYSMD4-208ENST00000493256 IBTKQ9P2D0 1353 aaPredicted RBP29.05■■■□□ 2.24
LYSMD4-208ENST00000493256 POTECB2RU33 542 aa29.05■■■□□ 2.24
LYSMD4-208ENST00000493256 GIGYF2Q6Y7W6 1299 aaKnown RBP29.05■■■□□ 2.24
LYSMD4-208ENST00000493256 SMC1BQ8NDV3 1235 aa29.05■■■□□ 2.24
LYSMD4-208ENST00000493256 PROSER3Q2NL68 480 aa29.04■■■□□ 2.24
LYSMD4-208ENST00000493256 CRY2Q49AN0 593 aa29.04■■■□□ 2.24
LYSMD4-208ENST00000493256 OLFM4Q6UX06 510 aa29.04■■■□□ 2.24
LYSMD4-208ENST00000493256 ZNF34Q8IZ26 560 aa29.04■■■□□ 2.24
LYSMD4-208ENST00000493256 DNAJC5GQ8N7S2 189 aa29.04■■■□□ 2.24
LYSMD4-208ENST00000493256 ADAMTS8Q9UP79 889 aa29.04■■■□□ 2.24
LYSMD4-208ENST00000493256 TRIM35Q9UPQ4 493 aa29.04■■■□□ 2.24
LYSMD4-208ENST00000493256 ANXA1P04083 346 aa29.03■■■□□ 2.24
LYSMD4-208ENST00000493256 SUSD4Q5VX71 490 aa29.03■■■□□ 2.24
LYSMD4-208ENST00000493256 PRKRIP1Q9H875 184 aaPredicted RBP29.03■■■□□ 2.24
LYSMD4-208ENST00000493256 ALDH1B1P30837 517 aa29.02■■■□□ 2.24
LYSMD4-208ENST00000493256 RIC1Q4ADV7 1423 aa29.02■■■□□ 2.24
LYSMD4-208ENST00000493256 CHL1O00533 1208 aa29.01■■■□□ 2.23
LYSMD4-208ENST00000493256 HTRA3P83110 453 aa29.01■■■□□ 2.23
LYSMD4-208ENST00000493256 FKBP4Q02790 459 aaKnown RBP eCLIP29.01■■■□□ 2.23
LYSMD4-208ENST00000493256 NTSR2O95665 410 aa29■■■□□ 2.23
LYSMD4-208ENST00000493256 KRT24Q2M2I5 525 aa29■■■□□ 2.23
LYSMD4-208ENST00000493256 NECTIN2Q92692 538 aa29■■■□□ 2.23
LYSMD4-208ENST00000493256 DDNO94850 711 aaPredicted RBP28.98■■■□□ 2.23
LYSMD4-208ENST00000493256 RTKN2Q8IZC4 609 aa28.98■■■□□ 2.23
LYSMD4-208ENST00000493256 ZNF277Q9NRM2 450 aaPredicted RBP28.98■■■□□ 2.23
LYSMD4-208ENST00000493256 LAS1LQ9Y4W2 734 aaKnown RBP28.98■■■□□ 2.23
LYSMD4-208ENST00000493256 PARP10Q53GL7 1025 aa28.97■■■□□ 2.23
LYSMD4-208ENST00000493256 SNED1Q8TER0 1413 aa28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms