RNA–Protein interactions for RNA: ENST00000489442.5

CCL28-202, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best)

Gene CCL28, Length 1,342 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-202ENST00000489442 PXDNLA1KZ92 1463 aa17.37■□□□□ 0.37
CCL28-202ENST00000489442 HDGFL1Q5TGJ6 251 aa17.36■□□□□ 0.37
CCL28-202ENST00000489442 DUSP27Q5VZP5 1158 aa17.36■□□□□ 0.37
CCL28-202ENST00000489442 WWC1Q8IX03 1113 aa17.36■□□□□ 0.37
CCL28-202ENST00000489442 NIP7Q9Y221 180 aaKnown RBP eCLIP17.36■□□□□ 0.37
CCL28-202ENST00000489442 BCS1LQ9Y276 419 aa17.36■□□□□ 0.37
CCL28-202ENST00000489442 NUP98P52948 1817 aa17.36■□□□□ 0.37
CCL28-202ENST00000489442 NRXN2Q9P2S2 1712 aa17.35■□□□□ 0.37
CCL28-202ENST00000489442 ERVV-1B6SEH8 477 aa17.35■□□□□ 0.37
CCL28-202ENST00000489442 RGL2O15211 777 aa17.35■□□□□ 0.37
CCL28-202ENST00000489442 HOXB7P09629 217 aa17.35■□□□□ 0.37
CCL28-202ENST00000489442 HLFQ16534 295 aa17.35■□□□□ 0.37
CCL28-202ENST00000489442 TTLL7Q6ZT98 887 aa17.35■□□□□ 0.37
CCL28-202ENST00000489442 NBPF5PQ86XG9 351 aaPredicted RBP17.35■□□□□ 0.37
CCL28-202ENST00000489442 CNBD1Q8NA66 436 aa17.35■□□□□ 0.37
CCL28-202ENST00000489442 ZBTB3Q9H5J0 574 aa17.35■□□□□ 0.37
CCL28-202ENST00000489442 PIM2Q9P1W9 311 aa17.35■□□□□ 0.37
CCL28-202ENST00000489442 MAP3K15Q6ZN16 1313 aa17.34■□□□□ 0.37
CCL28-202ENST00000489442 ELL2O00472 640 aaPredicted RBP17.34■□□□□ 0.37
CCL28-202ENST00000489442 ANXA1P04083 346 aa17.34■□□□□ 0.37
CCL28-202ENST00000489442 CHRNA5P30532 468 aa17.34■□□□□ 0.37
CCL28-202ENST00000489442 ST5P78524 1137 aa17.34■□□□□ 0.37
CCL28-202ENST00000489442 KIAA1551Q9HCM1 1747 aa17.34■□□□□ 0.37
CCL28-202ENST00000489442 FAM177BA6PVY3 158 aa17.33■□□□□ 0.36
CCL28-202ENST00000489442 H0YIN7 160 aa17.33■□□□□ 0.36
CCL28-202ENST00000489442 GTF2E1P29083 439 aaPredicted RBP17.33■□□□□ 0.36
CCL28-202ENST00000489442 AIMP1Q12904 312 aaKnown RBP17.33■□□□□ 0.36
CCL28-202ENST00000489442 PDIA6Q15084 440 aa17.33■□□□□ 0.36
CCL28-202ENST00000489442 NCBP3Q53F19 620 aaKnown RBP17.33■□□□□ 0.36
CCL28-202ENST00000489442 PRR5LQ6MZQ0 368 aa17.33■□□□□ 0.36
CCL28-202ENST00000489442 CCDC24Q8N4L8 307 aa17.33■□□□□ 0.36
CCL28-202ENST00000489442 DDX21Q9NR30 783 aaKnown RBP eCLIP17.33■□□□□ 0.36
CCL28-202ENST00000489442 PDE6BP35913 854 aa17.32■□□□□ 0.36
CCL28-202ENST00000489442 PROSER3Q2NL68 480 aa17.32■□□□□ 0.36
CCL28-202ENST00000489442 TPTE2Q6XPS3 522 aa17.32■□□□□ 0.36
CCL28-202ENST00000489442 C2CD5Q86YS7 1000 aa17.32■□□□□ 0.36
CCL28-202ENST00000489442 CHMP4AQ9BY43 222 aa17.32■□□□□ 0.36
CCL28-202ENST00000489442 CHPF2Q9P2E5 772 aa17.32■□□□□ 0.36
CCL28-202ENST00000489442 DBF4Q9UBU7 674 aaPredicted RBP17.32■□□□□ 0.36
CCL28-202ENST00000489442 BRCA1P38398 1863 aaKnown RBP17.31■□□□□ 0.36
CCL28-202ENST00000489442 KCNA3P22001 575 aa17.31■□□□□ 0.36
CCL28-202ENST00000489442 DALRD3Q5D0E6 543 aaKnown RBP17.31■□□□□ 0.36
CCL28-202ENST00000489442 COPS6Q7L5N1 327 aa17.31■□□□□ 0.36
CCL28-202ENST00000489442 XAGE3Q8WTP9 111 aa17.31■□□□□ 0.36
CCL28-202ENST00000489442 TSR2Q969E8 191 aaKnown RBP17.31■□□□□ 0.36
CCL28-202ENST00000489442 BRIP1Q9BX63 1249 aa17.31■□□□□ 0.36
CCL28-202ENST00000489442 GIGYF2Q6Y7W6 1299 aaKnown RBP17.3■□□□□ 0.36
CCL28-202ENST00000489442 PDZRN3Q9UPQ7 1066 aa17.3■□□□□ 0.36
CCL28-202ENST00000489442 IL16Q14005 1332 aa17.3■□□□□ 0.36
CCL28-202ENST00000489442 GPTP24298 496 aa17.29■□□□□ 0.36
CCL28-202ENST00000489442 WDR63Q8IWG1 891 aa17.29■□□□□ 0.36
CCL28-202ENST00000489442 C8orf58Q8NAV2 365 aa17.29■□□□□ 0.36
CCL28-202ENST00000489442 ZNF622Q969S3 477 aaKnown RBP eCLIP17.29■□□□□ 0.36
CCL28-202ENST00000489442 NYXQ9GZU5 481 aa17.29■□□□□ 0.36
CCL28-202ENST00000489442 HYPKQ9NX55 129 aa17.29■□□□□ 0.36
CCL28-202ENST00000489442 ANKRD31Q8N7Z5 1873 aa17.29■□□□□ 0.36
CCL28-202ENST00000489442 CCER2I3L3R5 266 aa17.28■□□□□ 0.36
CCL28-202ENST00000489442 DIEXFQ68CQ4 756 aaKnown RBP17.28■□□□□ 0.36
CCL28-202ENST00000489442 ARHGAP27Q6ZUM4 889 aa17.28■□□□□ 0.36
CCL28-202ENST00000489442 LRP10Q7Z4F1 713 aa17.28■□□□□ 0.36
CCL28-202ENST00000489442 ARFGEF1Q9Y6D6 1849 aa17.28■□□□□ 0.36
CCL28-202ENST00000489442 TTLL6Q8N841 843 aa17.27■□□□□ 0.36
CCL28-202ENST00000489442 HSP90AB3PQ58FF7 597 aa17.26■□□□□ 0.35
CCL28-202ENST00000489442 CCDC30Q5VVM6 783 aa17.26■□□□□ 0.35
CCL28-202ENST00000489442 ATP10DQ9P241 1426 aa17.26■□□□□ 0.35
CCL28-202ENST00000489442 DLEC1Q9Y238 1755 aa17.26■□□□□ 0.35
CCL28-202ENST00000489442 PARP10Q53GL7 1025 aa17.25■□□□□ 0.35
CCL28-202ENST00000489442 PPP1R42Q7Z4L9 355 aa17.25■□□□□ 0.35
CCL28-202ENST00000489442 ZNF34Q8IZ26 560 aa17.25■□□□□ 0.35
CCL28-202ENST00000489442 GOLGA2Q08379 1002 aa17.24■□□□□ 0.35
CCL28-202ENST00000489442 TWISTNBQ3B726 338 aaPredicted RBP17.24■□□□□ 0.35
CCL28-202ENST00000489442 ANKRD13DQ6ZTN6 518 aa17.24■□□□□ 0.35
CCL28-202ENST00000489442 NUTM1Q86Y26 1132 aa17.24■□□□□ 0.35
CCL28-202ENST00000489442 TSPYL6Q8N831 410 aa17.24■□□□□ 0.35
CCL28-202ENST00000489442 PLBD2Q8NHP8 589 aa17.24■□□□□ 0.35
CCL28-202ENST00000489442 STK31Q9BXU1 1019 aa17.24■□□□□ 0.35
CCL28-202ENST00000489442 MYH16Q9H6N6 1097 aa17.24■□□□□ 0.35
CCL28-202ENST00000489442 CACNA1SQ13698 1873 aa17.24■□□□□ 0.35
CCL28-202ENST00000489442 SUSD4Q5VX71 490 aa17.23■□□□□ 0.35
CCL28-202ENST00000489442 UBN2Q6ZU65 1347 aa17.23■□□□□ 0.35
CCL28-202ENST00000489442 FANCIQ9NVI1 1328 aa17.23■□□□□ 0.35
CCL28-202ENST00000489442 ANKRD36CQ5JPF3 1778 aa17.23■□□□□ 0.35
CCL28-202ENST00000489442 SRGNP10124 158 aa17.22■□□□□ 0.35
CCL28-202ENST00000489442 TCIRG1Q13488 830 aa17.22■□□□□ 0.35
CCL28-202ENST00000489442 ERFEQ4G0M1 354 aa17.22■□□□□ 0.35
CCL28-202ENST00000489442 RIC3Q7Z5B4 369 aa17.22■□□□□ 0.35
CCL28-202ENST00000489442 CNKSR1Q969H4 720 aa17.22■□□□□ 0.35
CCL28-202ENST00000489442 MASTLQ96GX5 879 aa17.22■□□□□ 0.35
CCL28-202ENST00000489442 COL11A2P13942 1736 aaPredicted RBP17.22■□□□□ 0.35
CCL28-202ENST00000489442 STYK1Q6J9G0 422 aa17.21■□□□□ 0.35
CCL28-202ENST00000489442 UTP14AQ9BVJ6 771 aaKnown RBP17.21■□□□□ 0.35
CCL28-202ENST00000489442 PHAXQ9H814 394 aaKnown RBP17.21■□□□□ 0.35
CCL28-202ENST00000489442 ZNF219Q9P2Y4 722 aaPredicted RBP17.21■□□□□ 0.35
CCL28-202ENST00000489442 TCERG1O14776 1098 aaKnown RBP17.21■□□□□ 0.34
CCL28-202ENST00000489442 DDX58O95786 925 aaKnown RBP17.21■□□□□ 0.34
CCL28-202ENST00000489442 NPR1P16066 1061 aa17.21■□□□□ 0.34
CCL28-202ENST00000489442 ZNF784Q8NCA9 323 aaPredicted RBP17.21■□□□□ 0.34
CCL28-202ENST00000489442 IBTKQ9P2D0 1353 aaPredicted RBP17.2■□□□□ 0.34
CCL28-202ENST00000489442 EXOSC9Q06265 439 aaKnown RBP17.2■□□□□ 0.34
CCL28-202ENST00000489442 NLRP10Q86W26 655 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms