RNA–Protein interactions for RNA: ENST00000489357.5

VTI1A-207, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 3

Gene VTI1A, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-207ENST00000489357 MAP3K9P80192 1104 aa10.69□□□□□ -0.7
VTI1A-207ENST00000489357 NBR1Q14596 966 aa10.69□□□□□ -0.7
VTI1A-207ENST00000489357 FAM182BQ5T319 152 aa10.69□□□□□ -0.7
VTI1A-207ENST00000489357 GAS2L2Q8NHY3 880 aa10.69□□□□□ -0.7
VTI1A-207ENST00000489357 OXER1Q8TDS5 423 aa10.69□□□□□ -0.7
VTI1A-207ENST00000489357 PTCD2Q8WV60 388 aaKnown RBP10.69□□□□□ -0.7
VTI1A-207ENST00000489357 LTV1Q96GA3 475 aaPredicted RBP10.69□□□□□ -0.7
VTI1A-207ENST00000489357 API5Q9BZZ5 524 aaKnown RBP10.69□□□□□ -0.7
VTI1A-207ENST00000489357 CHL1O00533 1208 aa10.68□□□□□ -0.7
VTI1A-207ENST00000489357 DPYSL4O14531 572 aa10.68□□□□□ -0.7
VTI1A-207ENST00000489357 SULT6B1Q6IMI4 303 aa10.68□□□□□ -0.7
VTI1A-207ENST00000489357 MARCH10Q8NA82 808 aaPredicted RBP10.68□□□□□ -0.7
VTI1A-207ENST00000489357 BCL2L13Q9BXK5 485 aa10.68□□□□□ -0.7
VTI1A-207ENST00000489357 MBIPQ9NS73 344 aa10.68□□□□□ -0.7
VTI1A-207ENST00000489357 ZBTB40Q9NUA8 1239 aa10.68□□□□□ -0.7
VTI1A-207ENST00000489357 NOB1Q9ULX3 412 aaKnown RBP10.68□□□□□ -0.7
VTI1A-207ENST00000489357 KAT6BQ8WYB5 2073 aa10.68□□□□□ -0.7
VTI1A-207ENST00000489357 MEGF6O75095 1541 aa10.68□□□□□ -0.7
VTI1A-207ENST00000489357 OVOS2A0A0G2JMS6 1433 aa10.67□□□□□ -0.7
VTI1A-207ENST00000489357 PKD1L3Q7Z443 1732 aa10.67□□□□□ -0.7
VTI1A-207ENST00000489357 ABCC4O15439 1325 aa10.67□□□□□ -0.7
VTI1A-207ENST00000489357 TBC1D12O60347 775 aa10.67□□□□□ -0.7
VTI1A-207ENST00000489357 HOXB3P14651 431 aaPredicted RBP10.67□□□□□ -0.7
VTI1A-207ENST00000489357 DDB1Q16531 1140 aa10.67□□□□□ -0.7
VTI1A-207ENST00000489357 TWISTNBQ3B726 338 aaPredicted RBP10.67□□□□□ -0.7
VTI1A-207ENST00000489357 C8orf34Q49A92 452 aa10.67□□□□□ -0.7
VTI1A-207ENST00000489357 MRPL50Q8N5N7 158 aaKnown RBP10.67□□□□□ -0.7
VTI1A-207ENST00000489357 CHMP4AQ9BY43 222 aa10.67□□□□□ -0.7
VTI1A-207ENST00000489357 PCDHB15Q9Y5E8 787 aa10.67□□□□□ -0.7
VTI1A-207ENST00000489357 TNS2Q63HR2 1409 aa10.67□□□□□ -0.7
VTI1A-207ENST00000489357 PTPRCP08575 1304 aa10.66□□□□□ -0.7
VTI1A-207ENST00000489357 EXOC5O00471 708 aa10.66□□□□□ -0.7
VTI1A-207ENST00000489357 FAM196AQ6ZSG2 479 aa10.66□□□□□ -0.7
VTI1A-207ENST00000489357 ITPRIPQ8IWB1 547 aa10.66□□□□□ -0.7
VTI1A-207ENST00000489357 SMC5Q8IY18 1101 aa10.66□□□□□ -0.7
VTI1A-207ENST00000489357 RIMBP2O15034 1052 aa10.65□□□□□ -0.7
VTI1A-207ENST00000489357 EIF5BO60841 1220 aaKnown RBP10.65□□□□□ -0.7
VTI1A-207ENST00000489357 DEFB132Q7Z7B7 95 aa10.65□□□□□ -0.7
VTI1A-207ENST00000489357 USHBP1Q8N6Y0 703 aa10.65□□□□□ -0.7
VTI1A-207ENST00000489357 RTF1Q92541 710 aaKnown RBP10.65□□□□□ -0.7
VTI1A-207ENST00000489357 TNS1Q9HBL0 1735 aaKnown RBP10.64□□□□□ -0.71
VTI1A-207ENST00000489357 ZNF710Q8N1W2 664 aa10.64□□□□□ -0.71
VTI1A-207ENST00000489357 TMEM57Q8N5G2 664 aa10.64□□□□□ -0.71
VTI1A-207ENST00000489357 GCC1Q96CN9 775 aa10.64□□□□□ -0.71
VTI1A-207ENST00000489357 PCDHGA4Q9Y5G9 962 aa10.64□□□□□ -0.71
VTI1A-207ENST00000489357 CACNA1FO60840 1977 aa10.64□□□□□ -0.71
VTI1A-207ENST00000489357 SPDYE16A6NNV3 312 aaPredicted RBP10.63□□□□□ -0.71
VTI1A-207ENST00000489357 ZCRB1Q8TBF4 217 aaKnown RBP10.63□□□□□ -0.71
VTI1A-207ENST00000489357 LAS1LQ9Y4W2 734 aaKnown RBP10.63□□□□□ -0.71
VTI1A-207ENST00000489357 ZBTB7BO15156 539 aaPredicted RBP10.62□□□□□ -0.71
VTI1A-207ENST00000489357 CYP27B1O15528 508 aa10.62□□□□□ -0.71
VTI1A-207ENST00000489357 TATP17735 454 aaPredicted RBP10.62□□□□□ -0.71
VTI1A-207ENST00000489357 RGS3P49796 1198 aa10.62□□□□□ -0.71
VTI1A-207ENST00000489357 SF3B2Q13435 895 aaKnown RBP10.62□□□□□ -0.71
VTI1A-207ENST00000489357 PDIA6Q15084 440 aa10.62□□□□□ -0.71
VTI1A-207ENST00000489357 INTS3Q68E01 1043 aaKnown RBP10.62□□□□□ -0.71
VTI1A-207ENST00000489357 AEBP1Q8IUX7 1158 aa10.62□□□□□ -0.71
VTI1A-207ENST00000489357 RAPGEF4Q8WZA2 1011 aa10.62□□□□□ -0.71
VTI1A-207ENST00000489357 UPF2Q9HAU5 1272 aaKnown RBP10.62□□□□□ -0.71
VTI1A-207ENST00000489357 ZSWIM6Q9HCJ5 1215 aa10.62□□□□□ -0.71
VTI1A-207ENST00000489357 PDZRN3Q9UPQ7 1066 aa10.62□□□□□ -0.71
VTI1A-207ENST00000489357 TRIM37O94972 964 aa10.61□□□□□ -0.71
VTI1A-207ENST00000489357 TNNQ9UQP3 1299 aa10.61□□□□□ -0.71
VTI1A-207ENST00000489357 MAP3K5Q99683 1374 aa10.61□□□□□ -0.71
VTI1A-207ENST00000489357 ITGB4P16144 1822 aa10.61□□□□□ -0.71
VTI1A-207ENST00000489357 NHSQ6T4R5 1651 aa10.6□□□□□ -0.71
VTI1A-207ENST00000489357 N4BP2Q86UW6 1770 aaPredicted RBP10.6□□□□□ -0.71
VTI1A-207ENST00000489357 GNAT3A8MTJ3 354 aa10.6□□□□□ -0.71
VTI1A-207ENST00000489357 EVI5O60447 810 aa10.6□□□□□ -0.71
VTI1A-207ENST00000489357 NUCB1Q02818 461 aa10.6□□□□□ -0.71
VTI1A-207ENST00000489357 TSPYL6Q8N831 410 aa10.6□□□□□ -0.71
VTI1A-207ENST00000489357 C8orf58Q8NAV2 365 aa10.6□□□□□ -0.71
VTI1A-207ENST00000489357 THUMPD2Q9BTF0 503 aaKnown RBP10.6□□□□□ -0.71
VTI1A-207ENST00000489357 RGPD3A6NKT7 1758 aaPredicted RBP10.6□□□□□ -0.71
VTI1A-207ENST00000489357 RGPD4Q7Z3J3 1758 aa10.6□□□□□ -0.71
VTI1A-207ENST00000489357 BAG6P46379 1132 aa10.59□□□□□ -0.71
VTI1A-207ENST00000489357 EN1Q05925 392 aaPredicted RBP10.59□□□□□ -0.71
VTI1A-207ENST00000489357 MTHFSDQ2M296 383 aaKnown RBP10.59□□□□□ -0.71
VTI1A-207ENST00000489357 ARSIQ5FYB1 569 aa10.59□□□□□ -0.71
VTI1A-207ENST00000489357 PTF1AQ7RTS3 328 aa10.59□□□□□ -0.71
VTI1A-207ENST00000489357 PXDNLA1KZ92 1463 aa10.59□□□□□ -0.71
VTI1A-207ENST00000489357 TOGARAM1Q9Y4F4 1720 aa10.58□□□□□ -0.72
VTI1A-207ENST00000489357 ADAMTS7Q9UKP4 1686 aa10.58□□□□□ -0.72
VTI1A-207ENST00000489357 SEMA3EO15041 775 aa10.58□□□□□ -0.72
VTI1A-207ENST00000489357 PLSCR1O15162 318 aa10.58□□□□□ -0.72
VTI1A-207ENST00000489357 HOXB7P09629 217 aa10.58□□□□□ -0.72
VTI1A-207ENST00000489357 AMOTQ4VCS5 1084 aa10.58□□□□□ -0.72
VTI1A-207ENST00000489357 GPR153Q6NV75 609 aa10.58□□□□□ -0.72
VTI1A-207ENST00000489357 RPAP2Q8IXW5 612 aaPredicted RBP10.58□□□□□ -0.72
VTI1A-207ENST00000489357 DDX54Q8TDD1 881 aaKnown RBP10.58□□□□□ -0.72
VTI1A-207ENST00000489357 CAMKK2Q96RR4 588 aa10.58□□□□□ -0.72
VTI1A-207ENST00000489357 DAXXQ9UER7 740 aaPredicted RBP10.58□□□□□ -0.72
VTI1A-207ENST00000489357 SPG7Q9UQ90 795 aa10.58□□□□□ -0.72
VTI1A-207ENST00000489357 BTAF1O14981 1849 aa10.58□□□□□ -0.72
VTI1A-207ENST00000489357 PCDH11XQ9BZA7 1347 aa10.58□□□□□ -0.72
VTI1A-207ENST00000489357 PCDH11YQ9BZA8 1340 aa10.58□□□□□ -0.72
VTI1A-207ENST00000489357 SCN11AQ9UI33 1791 aa10.57□□□□□ -0.72
VTI1A-207ENST00000489357 CEMIPQ8WUJ3 1361 aa10.57□□□□□ -0.72
VTI1A-207ENST00000489357 KCNQ2O43526 872 aa10.57□□□□□ -0.72
VTI1A-207ENST00000489357 PHKG2P15735 406 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms