RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 CABP1Q9NZU7 370 aa8.62□□□□□ -1.03
SMC4-220ENST00000488017 FAM229AH3BQW9 127 aa8.61□□□□□ -1.03
SMC4-220ENST00000488017 YBX3P16989 372 aaKnown RBP eCLIP8.61□□□□□ -1.03
SMC4-220ENST00000488017 TRIM28Q13263 835 aaKnown RBP8.61□□□□□ -1.03
SMC4-220ENST00000488017 COL9A3Q14050 684 aaPredicted RBP8.61□□□□□ -1.03
SMC4-220ENST00000488017 MDFIQ99750 246 aa8.61□□□□□ -1.03
SMC4-220ENST00000488017 STRN4Q9NRL3 753 aa8.61□□□□□ -1.03
SMC4-220ENST00000488017 BACH1O14867 736 aa8.6□□□□□ -1.03
SMC4-220ENST00000488017 PAX4O43316 350 aa8.6□□□□□ -1.03
SMC4-220ENST00000488017 BICDL1Q6ZP65 573 aa8.6□□□□□ -1.03
SMC4-220ENST00000488017 PRDM6Q9NQX0 595 aa8.6□□□□□ -1.03
SMC4-220ENST00000488017 USP3Q9Y6I4 520 aa8.6□□□□□ -1.03
SMC4-220ENST00000488017 COL17A1Q9UMD9 1497 aaPredicted RBP8.59□□□□□ -1.03
SMC4-220ENST00000488017 ADARB2-AS1A8MUL3 147 aa8.59□□□□□ -1.03
SMC4-220ENST00000488017 SIN3BO75182 1162 aa8.59□□□□□ -1.03
SMC4-220ENST00000488017 SEMA3FQ13275 785 aa8.59□□□□□ -1.03
SMC4-220ENST00000488017 SYT9Q86SS6 491 aa8.59□□□□□ -1.03
SMC4-220ENST00000488017 PCDHGA11Q9Y5H2 935 aa8.59□□□□□ -1.03
SMC4-220ENST00000488017 GPC6Q9Y625 555 aaPredicted RBP8.59□□□□□ -1.03
SMC4-220ENST00000488017 C9orf172C9J069 976 aa8.58□□□□□ -1.04
SMC4-220ENST00000488017 ADGRE1Q14246 886 aa8.58□□□□□ -1.04
SMC4-220ENST00000488017 GRIK4Q16099 956 aa8.58□□□□□ -1.04
SMC4-220ENST00000488017 FMNL2Q96PY5 1086 aa8.58□□□□□ -1.04
SMC4-220ENST00000488017 ELNP15502 786 aa8.57□□□□□ -1.04
SMC4-220ENST00000488017 SCHIP1Q9P0W5 487 aaPredicted RBP8.57□□□□□ -1.04
SMC4-220ENST00000488017 LZTS3O60299 673 aaPredicted RBP8.56□□□□□ -1.04
SMC4-220ENST00000488017 TXLNAP40222 546 aa8.56□□□□□ -1.04
SMC4-220ENST00000488017 TEAD4Q15561 434 aa8.56□□□□□ -1.04
SMC4-220ENST00000488017 TNFRSF25Q93038 417 aa8.56□□□□□ -1.04
SMC4-220ENST00000488017 GDPD2Q9HCC8 539 aa8.56□□□□□ -1.04
SMC4-220ENST00000488017 M0R082 166 aa8.55□□□□□ -1.04
SMC4-220ENST00000488017 EML1O00423 815 aa8.55□□□□□ -1.04
SMC4-220ENST00000488017 ABL2P42684 1182 aa8.55□□□□□ -1.04
SMC4-220ENST00000488017 MBTPS1Q14703 1052 aa8.55□□□□□ -1.04
SMC4-220ENST00000488017 EML3Q32P44 896 aa8.55□□□□□ -1.04
SMC4-220ENST00000488017 ZNF417Q8TAU3 575 aa8.55□□□□□ -1.04
SMC4-220ENST00000488017 L3MBTL2Q969R5 705 aa8.55□□□□□ -1.04
SMC4-220ENST00000488017 ZNF587Q96SQ5 575 aaPredicted RBP8.55□□□□□ -1.04
SMC4-220ENST00000488017 PARP3Q9Y6F1 533 aa8.55□□□□□ -1.04
SMC4-220ENST00000488017 ZDHHC1Q8WTX9 485 aa8.54□□□□□ -1.04
SMC4-220ENST00000488017 NEUROD4Q9HD90 331 aa8.54□□□□□ -1.04
SMC4-220ENST00000488017 NOD1Q9Y239 953 aa8.54□□□□□ -1.04
SMC4-220ENST00000488017 NOS2P35228 1153 aa8.53□□□□□ -1.04
SMC4-220ENST00000488017 LRRC69Q6ZNQ3 347 aa8.53□□□□□ -1.04
SMC4-220ENST00000488017 TXNRD3Q86VQ6 643 aa8.53□□□□□ -1.04
SMC4-220ENST00000488017 ZNF358Q9NW07 568 aa8.53□□□□□ -1.04
SMC4-220ENST00000488017 RNF112Q9ULX5 631 aa8.53□□□□□ -1.04
SMC4-220ENST00000488017 STARD13Q9Y3M8 1113 aa8.53□□□□□ -1.04
SMC4-220ENST00000488017 NID1P14543 1247 aa8.52□□□□□ -1.05
SMC4-220ENST00000488017 NEUROD1Q13562 356 aa8.52□□□□□ -1.05
SMC4-220ENST00000488017 MICALL1Q8N3F8 863 aa8.52□□□□□ -1.05
SMC4-220ENST00000488017 SELPP16109 830 aa8.51□□□□□ -1.05
SMC4-220ENST00000488017 GTF2IP78347 998 aa8.51□□□□□ -1.05
SMC4-220ENST00000488017 NFATC2IPQ8NCF5 419 aa8.51□□□□□ -1.05
SMC4-220ENST00000488017 C7orf43Q8WVR3 580 aa8.51□□□□□ -1.05
SMC4-220ENST00000488017 PIK3CDO00329 1044 aa8.5□□□□□ -1.05
SMC4-220ENST00000488017 EPHA4P54764 986 aa8.5□□□□□ -1.05
SMC4-220ENST00000488017 NRG1Q02297 640 aaPredicted RBP8.5□□□□□ -1.05
SMC4-220ENST00000488017 SFSWAPQ12872 951 aaKnown RBP8.5□□□□□ -1.05
SMC4-220ENST00000488017 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.5□□□□□ -1.05
SMC4-220ENST00000488017 TP53INP1Q96A56 240 aa8.5□□□□□ -1.05
SMC4-220ENST00000488017 SLC30A3Q99726 388 aa8.5□□□□□ -1.05
SMC4-220ENST00000488017 ARID1BQ8NFD5 2236 aaPredicted RBP8.5□□□□□ -1.05
SMC4-220ENST00000488017 ALBP02768 609 aa8.49□□□□□ -1.05
SMC4-220ENST00000488017 SKIP12755 728 aa8.49□□□□□ -1.05
SMC4-220ENST00000488017 PSME1Q06323 249 aa8.49□□□□□ -1.05
SMC4-220ENST00000488017 SPEM2Q0P670 501 aa8.49□□□□□ -1.05
SMC4-220ENST00000488017 C8orf86Q6ZUL3 223 aa8.49□□□□□ -1.05
SMC4-220ENST00000488017 SLC9A9Q8IVB4 645 aa8.49□□□□□ -1.05
SMC4-220ENST00000488017 LENG1Q96BZ8 264 aaPredicted RBP8.49□□□□□ -1.05
SMC4-220ENST00000488017 SSBP4Q9BWG4 385 aaPredicted RBP8.49□□□□□ -1.05
SMC4-220ENST00000488017 KRTAP4-9Q9BYQ8 210 aa8.49□□□□□ -1.05
SMC4-220ENST00000488017 SERTM1A2A2V5 107 aa8.48□□□□□ -1.05
SMC4-220ENST00000488017 ADH7P40394 386 aa8.48□□□□□ -1.05
SMC4-220ENST00000488017 C1orf53Q5VUE5 145 aa8.48□□□□□ -1.05
SMC4-220ENST00000488017 RHPN1Q8TCX5 695 aa8.48□□□□□ -1.05
SMC4-220ENST00000488017 ZNF232Q9UNY5 417 aa8.48□□□□□ -1.05
SMC4-220ENST00000488017 KCNQ4P56696 695 aa8.47□□□□□ -1.05
SMC4-220ENST00000488017 C20orf204Q6ZNR8 217 aa8.47□□□□□ -1.05
SMC4-220ENST00000488017 ANKIB1Q9P2G1 1089 aa8.47□□□□□ -1.05
SMC4-220ENST00000488017 FZD5Q13467 585 aa8.46□□□□□ -1.06
SMC4-220ENST00000488017 NCOA4Q13772 614 aa8.46□□□□□ -1.06
SMC4-220ENST00000488017 HIRAP54198 1017 aaPredicted RBP8.45□□□□□ -1.06
SMC4-220ENST00000488017 TRAPPC3LQ5T215 181 aa8.45□□□□□ -1.06
SMC4-220ENST00000488017 TNS4Q8IZW8 715 aa8.45□□□□□ -1.06
SMC4-220ENST00000488017 ALG2Q9H553 416 aa8.45□□□□□ -1.06
SMC4-220ENST00000488017 BRD7Q9NPI1 651 aa8.45□□□□□ -1.06
SMC4-220ENST00000488017 PSMA6P60900 246 aaKnown RBP8.44□□□□□ -1.06
SMC4-220ENST00000488017 POTEAQ6S8J7 498 aa8.44□□□□□ -1.06
SMC4-220ENST00000488017 TRIM50Q86XT4 487 aa8.44□□□□□ -1.06
SMC4-220ENST00000488017 CEP63Q96MT8 703 aa8.44□□□□□ -1.06
SMC4-220ENST00000488017 KCNH4Q9UQ05 1017 aa8.44□□□□□ -1.06
SMC4-220ENST00000488017 CHMP3Q9Y3E7 222 aa8.44□□□□□ -1.06
SMC4-220ENST00000488017 A0A0A0MRY4 1105 aa8.43□□□□□ -1.06
SMC4-220ENST00000488017 LILRB5O75023 590 aa8.43□□□□□ -1.06
SMC4-220ENST00000488017 MCM6Q14566 821 aa8.43□□□□□ -1.06
SMC4-220ENST00000488017 TBCELQ5QJ74 424 aa8.43□□□□□ -1.06
SMC4-220ENST00000488017 USP17L5A8MUK1 530 aa8.42□□□□□ -1.06
SMC4-220ENST00000488017 SH3PXD2AQ5TCZ1 1133 aa8.42□□□□□ -1.06
SMC4-220ENST00000488017 EFCC1Q9HA90 598 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms