RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 CEP350Q5VT06 3117 aa16.21■□□□□ 0.18
SDC3-204ENST00000487984 HLFQ16534 295 aa16.2■□□□□ 0.18
SDC3-204ENST00000487984 NIP7Q9Y221 180 aaKnown RBP eCLIP16.2■□□□□ 0.18
SDC3-204ENST00000487984 COL11A2P13942 1736 aaPredicted RBP16.19■□□□□ 0.18
SDC3-204ENST00000487984 LAMB4A4D0S4 1761 aa16.19■□□□□ 0.18
SDC3-204ENST00000487984 NFKBIEO00221 500 aa16.19■□□□□ 0.18
SDC3-204ENST00000487984 HSPA6P17066 643 aa16.19■□□□□ 0.18
SDC3-204ENST00000487984 LMNB1P20700 586 aa16.19■□□□□ 0.18
SDC3-204ENST00000487984 TMPOP42166 694 aaKnown RBP16.19■□□□□ 0.18
SDC3-204ENST00000487984 NGEFQ8N5V2 710 aa16.19■□□□□ 0.18
SDC3-204ENST00000487984 TSPYL4Q9UJ04 414 aa16.19■□□□□ 0.18
SDC3-204ENST00000487984 C21orf2O43822 256 aa16.18■□□□□ 0.18
SDC3-204ENST00000487984 SRGNP10124 158 aa16.18■□□□□ 0.18
SDC3-204ENST00000487984 STYK1Q6J9G0 422 aa16.18■□□□□ 0.18
SDC3-204ENST00000487984 CCDC146Q8IYE0 955 aa16.18■□□□□ 0.18
SDC3-204ENST00000487984 ZNF219Q9P2Y4 722 aaPredicted RBP16.18■□□□□ 0.18
SDC3-204ENST00000487984 RRP7AQ9Y3A4 280 aaKnown RBP16.18■□□□□ 0.18
SDC3-204ENST00000487984 TOMM70O94826 608 aa16.17■□□□□ 0.18
SDC3-204ENST00000487984 LMOD3Q0VAK6 560 aa16.17■□□□□ 0.18
SDC3-204ENST00000487984 CNKSR1Q969H4 720 aa16.17■□□□□ 0.18
SDC3-204ENST00000487984 MASTLQ96GX5 879 aa16.17■□□□□ 0.18
SDC3-204ENST00000487984 KDM2BQ8NHM5 1336 aa16.17■□□□□ 0.18
SDC3-204ENST00000487984 ZC3H4Q9UPT8 1303 aaKnown RBP16.17■□□□□ 0.18
SDC3-204ENST00000487984 FAM177BA6PVY3 158 aa16.16■□□□□ 0.18
SDC3-204ENST00000487984 ERVV-1B6SEH8 477 aa16.16■□□□□ 0.18
SDC3-204ENST00000487984 MYL6BP14649 208 aa16.16■□□□□ 0.18
SDC3-204ENST00000487984 PRPF40BQ6NWY9 871 aaKnown RBP16.16■□□□□ 0.18
SDC3-204ENST00000487984 TPTE2Q6XPS3 522 aa16.16■□□□□ 0.18
SDC3-204ENST00000487984 TTLL7Q6ZT98 887 aa16.16■□□□□ 0.18
SDC3-204ENST00000487984 SBF1O95248 1867 aa16.16■□□□□ 0.18
SDC3-204ENST00000487984 MAP3K15Q6ZN16 1313 aa16.16■□□□□ 0.18
SDC3-204ENST00000487984 KLRG2A4D1S0 409 aaPredicted RBP16.15■□□□□ 0.18
SDC3-204ENST00000487984 WDR43Q15061 677 aaKnown RBP eCLIP16.15■□□□□ 0.18
SDC3-204ENST00000487984 KIF6Q6ZMV9 814 aa16.15■□□□□ 0.18
SDC3-204ENST00000487984 PRKRIP1Q9H875 184 aaPredicted RBP16.15■□□□□ 0.18
SDC3-204ENST00000487984 BABAM1Q9NWV8 329 aa16.15■□□□□ 0.18
SDC3-204ENST00000487984 NEUROD2Q15784 382 aa16.14■□□□□ 0.17
SDC3-204ENST00000487984 RUNDC1Q96C34 613 aa16.14■□□□□ 0.17
SDC3-204ENST00000487984 RRAGCQ9HB90 399 aa16.14■□□□□ 0.17
SDC3-204ENST00000487984 ERBB4Q15303 1308 aa16.14■□□□□ 0.17
SDC3-204ENST00000487984 NPR1P16066 1061 aa16.13■□□□□ 0.17
SDC3-204ENST00000487984 C16orf71Q8IYS4 520 aaPredicted RBP16.13■□□□□ 0.17
SDC3-204ENST00000487984 RBM46Q8TBY0 533 aaKnown RBP16.13■□□□□ 0.17
SDC3-204ENST00000487984 ZBTB3Q9H5J0 574 aa16.13■□□□□ 0.17
SDC3-204ENST00000487984 ADAMTS8Q9UP79 889 aa16.13■□□□□ 0.17
SDC3-204ENST00000487984 GLTPD2A6NH11 291 aa16.12■□□□□ 0.17
SDC3-204ENST00000487984 EIF2S2P20042 333 aaKnown RBP16.12■□□□□ 0.17
SDC3-204ENST00000487984 PDIA6Q15084 440 aa16.12■□□□□ 0.17
SDC3-204ENST00000487984 LRP10Q7Z4F1 713 aa16.12■□□□□ 0.17
SDC3-204ENST00000487984 C7orf43Q8WVR3 580 aa16.12■□□□□ 0.17
SDC3-204ENST00000487984 TAOK3Q9H2K8 898 aa16.12■□□□□ 0.17
SDC3-204ENST00000487984 TRIM35Q9UPQ4 493 aa16.12■□□□□ 0.17
SDC3-204ENST00000487984 LTBP3Q9NS15 1303 aa16.12■□□□□ 0.17
SDC3-204ENST00000487984 ABCC12Q96J65 1359 aa16.12■□□□□ 0.17
SDC3-204ENST00000487984 SLX4Q8IY92 1834 aa16.11■□□□□ 0.17
SDC3-204ENST00000487984 GPTP24298 496 aa16.11■□□□□ 0.17
SDC3-204ENST00000487984 GTF2E1P29083 439 aaPredicted RBP16.11■□□□□ 0.17
SDC3-204ENST00000487984 PROSER3Q2NL68 480 aa16.11■□□□□ 0.17
SDC3-204ENST00000487984 SOGA3Q5TF21 947 aa16.11■□□□□ 0.17
SDC3-204ENST00000487984 NUTM1Q86Y26 1132 aa16.11■□□□□ 0.17
SDC3-204ENST00000487984 NYXQ9GZU5 481 aa16.11■□□□□ 0.17
SDC3-204ENST00000487984 UBN2Q6ZU65 1347 aa16.11■□□□□ 0.17
SDC3-204ENST00000487984 CHL1O00533 1208 aa16.1■□□□□ 0.17
SDC3-204ENST00000487984 ANXA1P04083 346 aa16.1■□□□□ 0.17
SDC3-204ENST00000487984 ERFEQ4G0M1 354 aa16.1■□□□□ 0.17
SDC3-204ENST00000487984 TNRC6CQ9HCJ0 1690 aaKnown RBP16.09■□□□□ 0.17
SDC3-204ENST00000487984 TIAM2Q8IVF5 1701 aa16.09■□□□□ 0.17
SDC3-204ENST00000487984 APLP1P51693 650 aa16.09■□□□□ 0.17
SDC3-204ENST00000487984 KRT24Q2M2I5 525 aa16.09■□□□□ 0.17
SDC3-204ENST00000487984 SUSD4Q5VX71 490 aa16.09■□□□□ 0.17
SDC3-204ENST00000487984 GIGYF2Q6Y7W6 1299 aaKnown RBP16.09■□□□□ 0.17
SDC3-204ENST00000487984 ZNF34Q8IZ26 560 aa16.09■□□□□ 0.17
SDC3-204ENST00000487984 LAS1LQ9Y4W2 734 aaKnown RBP16.09■□□□□ 0.17
SDC3-204ENST00000487984 FER1L6Q2WGJ9 1857 aa16.09■□□□□ 0.17
SDC3-204ENST00000487984 IBTKQ9P2D0 1353 aaPredicted RBP16.09■□□□□ 0.17
SDC3-204ENST00000487984 FSTL1Q12841 308 aa16.08■□□□□ 0.16
SDC3-204ENST00000487984 CRY2Q49AN0 593 aa16.08■□□□□ 0.16
SDC3-204ENST00000487984 CCDC93Q567U6 631 aa16.08■□□□□ 0.16
SDC3-204ENST00000487984 OLFM4Q6UX06 510 aa16.08■□□□□ 0.16
SDC3-204ENST00000487984 NECTIN2Q92692 538 aa16.08■□□□□ 0.16
SDC3-204ENST00000487984 ARFGEF2Q9Y6D5 1785 aa16.08■□□□□ 0.16
SDC3-204ENST00000487984 NTSR2O95665 410 aa16.07■□□□□ 0.16
SDC3-204ENST00000487984 VEGFAP15692 232 aaPredicted RBP16.07■□□□□ 0.16
SDC3-204ENST00000487984 NUP98P52948 1817 aa16.06■□□□□ 0.16
SDC3-204ENST00000487984 RIC1Q4ADV7 1423 aa16.06■□□□□ 0.16
SDC3-204ENST00000487984 ALDH1B1P30837 517 aa16.06■□□□□ 0.16
SDC3-204ENST00000487984 DPY19L2Q6NUT2 758 aa16.06■□□□□ 0.16
SDC3-204ENST00000487984 POTECB2RU33 542 aa16.05■□□□□ 0.16
SDC3-204ENST00000487984 FKBP4Q02790 459 aaKnown RBP eCLIP16.05■□□□□ 0.16
SDC3-204ENST00000487984 PARP10Q53GL7 1025 aa16.05■□□□□ 0.16
SDC3-204ENST00000487984 COPS6Q7L5N1 327 aa16.05■□□□□ 0.16
SDC3-204ENST00000487984 PPP1R42Q7Z4L9 355 aa16.05■□□□□ 0.16
SDC3-204ENST00000487984 SMC1BQ8NDV3 1235 aa16.05■□□□□ 0.16
SDC3-204ENST00000487984 XAGE3Q8WTP9 111 aa16.05■□□□□ 0.16
SDC3-204ENST00000487984 CACNA1SQ13698 1873 aa16.05■□□□□ 0.16
SDC3-204ENST00000487984 AIMP1Q12904 312 aaKnown RBP16.04■□□□□ 0.16
SDC3-204ENST00000487984 C3orf67Q6ZVT6 689 aa16.04■□□□□ 0.16
SDC3-204ENST00000487984 RTKN2Q8IZC4 609 aa16.04■□□□□ 0.16
SDC3-204ENST00000487984 CFAP44Q96MT7 982 aa16.04■□□□□ 0.16
SDC3-204ENST00000487984 DDX21Q9NR30 783 aaKnown RBP eCLIP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms