RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 FAM83GA6ND36 823 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 H3BQV1 296 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 FYB1O15117 783 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 SMC2O95347 1197 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 SLC4A2P04920 1241 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 LMAN1P49257 510 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 IFFO2Q5TF58 517 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 CNTROBQ8N137 903 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 CCAR2Q8N163 923 aaKnown RBP7.34□□□□□ -1.23
VPS13D-209ENST00000487188 KLHL34Q8N239 644 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 SH2B1Q9NRF2 756 aaPredicted RBP7.34□□□□□ -1.23
VPS13D-209ENST00000487188 PPP6R1Q9UPN7 881 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 TCHHQ07283 1943 aa7.34□□□□□ -1.23
VPS13D-209ENST00000487188 CCT4P50991 539 aaKnown RBP7.34□□□□□ -1.24
VPS13D-209ENST00000487188 CTR9Q6PD62 1173 aa7.34□□□□□ -1.24
VPS13D-209ENST00000487188 CCDC73Q6ZRK6 1079 aa7.34□□□□□ -1.24
VPS13D-209ENST00000487188 TDRD7Q8NHU6 1098 aaKnown RBP7.34□□□□□ -1.24
VPS13D-209ENST00000487188 RUFY2Q8WXA3 655 aa7.34□□□□□ -1.24
VPS13D-209ENST00000487188 C14orf93Q9H972 538 aaKnown RBP7.34□□□□□ -1.24
VPS13D-209ENST00000487188 EFCC1Q9HA90 598 aa7.34□□□□□ -1.24
VPS13D-209ENST00000487188 MTMR6Q9Y217 621 aa7.34□□□□□ -1.24
VPS13D-209ENST00000487188 MROH2AA6NES4 1674 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 CPA1P15085 419 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 GSDMDP57764 484 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 SYT10Q6XYQ8 523 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 NUTM1Q86Y26 1132 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 LRRC8AQ8IWT6 810 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 DDX54Q8TDD1 881 aaKnown RBP7.33□□□□□ -1.24
VPS13D-209ENST00000487188 STAG3Q9UJ98 1225 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 C3P01024 1663 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 USP27XA6NNY8 438 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 CAVIN2O95810 425 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 HSPA4P34932 840 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 FAM173BQ6P4H8 233 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 CWC27Q6UX04 472 aaKnown RBP7.33□□□□□ -1.24
VPS13D-209ENST00000487188 TTC6Q86TZ1 520 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 NECAB1Q8N987 351 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 OSBPL3Q9H4L5 887 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 USP16Q9Y5T5 823 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 PTPRCP08575 1304 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 NPHP3Q7Z494 1330 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 F6X3S4 739 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 URI1O94763 535 aaPredicted RBP7.33□□□□□ -1.24
VPS13D-209ENST00000487188 GNAI3P08754 354 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 PNMA6AP0CW24 399 aaPredicted RBP7.33□□□□□ -1.24
VPS13D-209ENST00000487188 CLCN6P51797 869 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 RBM6P78332 1123 aaKnown RBP7.33□□□□□ -1.24
VPS13D-209ENST00000487188 ZSCAN26Q16670 478 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 CCDC144BQ3MJ40 725 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 CCDC144CPQ8IYA2 1237 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 CEP57L1Q8IYX8 460 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 CLSTN2Q9H4D0 955 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 SNX14Q9Y5W7 946 aa7.33□□□□□ -1.24
VPS13D-209ENST00000487188 UGGT1Q9NYU2 1555 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 TULP2O00295 520 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 KINO60870 393 aaKnown RBP7.32□□□□□ -1.24
VPS13D-209ENST00000487188 SFPQP23246 707 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS13D-209ENST00000487188 CEBPZQ03701 1054 aaKnown RBP7.32□□□□□ -1.24
VPS13D-209ENST00000487188 STX1AQ16623 288 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 PLA2G4DQ86XP0 818 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 NAT10Q9H0A0 1025 aaKnown RBP7.32□□□□□ -1.24
VPS13D-209ENST00000487188 SPG7Q9UQ90 795 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 QRICH2Q9H0J4 1663 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 VGFO15240 615 aaPredicted RBP7.32□□□□□ -1.24
VPS13D-209ENST00000487188 CCP110O43303 1012 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 TPM1P09493 284 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 HSP90B1P14625 803 aaKnown RBP7.32□□□□□ -1.24
VPS13D-209ENST00000487188 FBLN1P23142 703 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 OAS2P29728 719 aaKnown RBP7.32□□□□□ -1.24
VPS13D-209ENST00000487188 ARID5BQ14865 1188 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 RUFY3Q7L099 469 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 CCDC34Q96HJ3 373 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 TOMM22Q9NS69 142 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.32□□□□□ -1.24
VPS13D-209ENST00000487188 LMTK3Q96Q04 1460 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 PRPF40BQ6NWY9 871 aaKnown RBP7.32□□□□□ -1.24
VPS13D-209ENST00000487188 DEF6Q9H4E7 631 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 ATP10DQ9P241 1426 aa7.32□□□□□ -1.24
VPS13D-209ENST00000487188 CDC25BP30305 580 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 GPATCH11Q8N954 259 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 SYTL4Q96C24 671 aaPredicted RBP7.31□□□□□ -1.24
VPS13D-209ENST00000487188 KIF1BPQ96EK5 621 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 DNAI1Q9UI46 699 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.31□□□□□ -1.248e-7■□□□□ 8.7
VPS13D-209ENST00000487188 LRRC7Q96NW7 1537 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 SURF6O75683 361 aaKnown RBP7.31□□□□□ -1.24
VPS13D-209ENST00000487188 CASQ1P31415 396 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 FOSBP53539 338 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 STK3Q13188 491 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 FAM177A1Q8N128 213 aaPredicted RBP7.31□□□□□ -1.24
VPS13D-209ENST00000487188 PUS7Q96PZ0 661 aaKnown RBP7.31□□□□□ -1.24
VPS13D-209ENST00000487188 MYO1CO00159 1063 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 ZFYVE9O95405 1425 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 TTC31Q49AM3 519 aaPredicted RBP7.31□□□□□ -1.24
VPS13D-209ENST00000487188 GGT6Q6P531 493 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 TMC6Q7Z403 805 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 ESF1Q9H501 851 aaKnown RBP7.31□□□□□ -1.24
VPS13D-209ENST00000487188 ANO10Q9NW15 660 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 RIMS2Q9UQ26 1411 aa7.31□□□□□ -1.24
VPS13D-209ENST00000487188 CDC37L1Q7L3B6 337 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms