RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 NUTM1Q86Y26 1132 aa12.62□□□□□ -0.39
CCDC171-208ENST00000486641 IL1RAPL2Q9NP60 686 aa12.62□□□□□ -0.39
CCDC171-208ENST00000486641 ERBB3P21860 1342 aa12.62□□□□□ -0.39
CCDC171-208ENST00000486641 CCDC171Q6TFL3 1326 aa12.62□□□□□ -0.39
CCDC171-208ENST00000486641 KIDINS220Q9ULH0 1771 aa12.62□□□□□ -0.39
CCDC171-208ENST00000486641 CDK12Q9NYV4 1490 aaPredicted RBP12.61□□□□□ -0.39
CCDC171-208ENST00000486641 SLFNL1Q499Z3 407 aa12.61□□□□□ -0.39
CCDC171-208ENST00000486641 FERMT3Q86UX7 667 aa12.61□□□□□ -0.39
CCDC171-208ENST00000486641 DNAJC25Q9H1X3 360 aa12.61□□□□□ -0.39
CCDC171-208ENST00000486641 MIS18AQ9NYP9 233 aa12.61□□□□□ -0.39
CCDC171-208ENST00000486641 RRS1Q15050 365 aaKnown RBP12.61□□□□□ -0.39
CCDC171-208ENST00000486641 RBM43Q6ZSC3 357 aaKnown RBP12.61□□□□□ -0.39
CCDC171-208ENST00000486641 TRMT1Q9NXH9 659 aaKnown RBP12.61□□□□□ -0.39
CCDC171-208ENST00000486641 SLU7O95391 586 aaKnown RBP12.6□□□□□ -0.39
CCDC171-208ENST00000486641 CDC25BP30305 580 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 LARP1BQ659C4 914 aaKnown RBP12.6□□□□□ -0.39
CCDC171-208ENST00000486641 NECAB1Q8N987 351 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 PDRG1Q9NUG6 133 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 SPG7Q9UQ90 795 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 ELP1O95163 1332 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 AOX1Q06278 1338 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 SKILP12757 684 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 BMS1Q14692 1282 aaKnown RBP12.6□□□□□ -0.39
CCDC171-208ENST00000486641 ME3Q16798 604 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 ADCK5Q3MIX3 580 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 CDC37L1Q7L3B6 337 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 NME9Q86XW9 330 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 TRIM34Q9BYJ4 488 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 CLSTN2Q9H4D0 955 aa12.6□□□□□ -0.39
CCDC171-208ENST00000486641 TFIP11Q9UBB9 837 aaKnown RBP12.6□□□□□ -0.39
CCDC171-208ENST00000486641 PIK3C2BO00750 1634 aa12.59□□□□□ -0.39
CCDC171-208ENST00000486641 PREX1Q8TCU6 1659 aa12.59□□□□□ -0.39
CCDC171-208ENST00000486641 CWC27Q6UX04 472 aaKnown RBP12.59□□□□□ -0.39
CCDC171-208ENST00000486641 CREBRFQ8IUR6 639 aa12.59□□□□□ -0.39
CCDC171-208ENST00000486641 GTF3C6Q969F1 213 aa12.59□□□□□ -0.39
CCDC171-208ENST00000486641 ZSCAN31Q96LW9 406 aaPredicted RBP12.59□□□□□ -0.39
CCDC171-208ENST00000486641 TTC21AQ8NDW8 1320 aa12.59□□□□□ -0.39
CCDC171-208ENST00000486641 GOLGA6L4A6NEF3 574 aa12.59□□□□□ -0.39
CCDC171-208ENST00000486641 NR1I2O75469 434 aa12.59□□□□□ -0.39
CCDC171-208ENST00000486641 VPS53Q5VIR6 699 aa12.59□□□□□ -0.39
CCDC171-208ENST00000486641 PI4K2BQ8TCG2 481 aa12.59□□□□□ -0.39
CCDC171-208ENST00000486641 DDX19AQ9NUU7 478 aaKnown RBP12.59□□□□□ -0.39
CCDC171-208ENST00000486641 FHOD1Q9Y613 1164 aa12.59□□□□□ -0.39
CCDC171-208ENST00000486641 H2AFXP16104 143 aaPredicted RBP12.58□□□□□ -0.4
CCDC171-208ENST00000486641 ERCC6LQ2NKX8 1250 aa12.58□□□□□ -0.4
CCDC171-208ENST00000486641 DDX54Q8TDD1 881 aaKnown RBP12.58□□□□□ -0.4
CCDC171-208ENST00000486641 JAKMIP1Q96N16 626 aaKnown RBP12.58□□□□□ -0.4
CCDC171-208ENST00000486641 SH2B1Q9NRF2 756 aaPredicted RBP12.58□□□□□ -0.4
CCDC171-208ENST00000486641 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.58□□□□□ -0.4
CCDC171-208ENST00000486641 FEZ2Q9UHY8 353 aaPredicted RBP12.58□□□□□ -0.4
CCDC171-208ENST00000486641 LRRFIP2Q9Y608 721 aaKnown RBP12.58□□□□□ -0.4
CCDC171-208ENST00000486641 SIGLEC1Q9BZZ2 1709 aa12.58□□□□□ -0.4
CCDC171-208ENST00000486641 NEMFO60524 1076 aa12.57□□□□□ -0.4
CCDC171-208ENST00000486641 GNAI3P08754 354 aa12.57□□□□□ -0.4
CCDC171-208ENST00000486641 CCZ1BP86790 482 aa12.57□□□□□ -0.4
CCDC171-208ENST00000486641 CCZ1P86791 482 aaPredicted RBP12.57□□□□□ -0.4
CCDC171-208ENST00000486641 IDI1Q13907 227 aa12.57□□□□□ -0.4
CCDC171-208ENST00000486641 SULT6B1Q6IMI4 303 aa12.57□□□□□ -0.4
CCDC171-208ENST00000486641 CCAR2Q8N163 923 aaKnown RBP12.57□□□□□ -0.4
CCDC171-208ENST00000486641 SPATA32Q96LK8 384 aa12.57□□□□□ -0.4
CCDC171-208ENST00000486641 CCDC69A6NI79 296 aa12.57□□□□□ -0.4
CCDC171-208ENST00000486641 IQCB1Q15051 598 aa12.57□□□□□ -0.4
CCDC171-208ENST00000486641 ZSWIM6Q9HCJ5 1215 aa12.57□□□□□ -0.4
CCDC171-208ENST00000486641 PLA2G4AP47712 749 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 PTH1RQ03431 593 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 RNF20Q5VTR2 975 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 SARM1Q6SZW1 724 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 LRRN4CLQ8ND94 238 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 LEO1Q8WVC0 666 aaPredicted RBP12.56□□□□□ -0.4
CCDC171-208ENST00000486641 MRFAP1L1Q96HT8 127 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 CHMP4AQ9BY43 222 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 SCAND2PQ9GZW5 306 aaPredicted RBP12.56□□□□□ -0.4
CCDC171-208ENST00000486641 USP16Q9Y5T5 823 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 CYP46A1Q9Y6A2 500 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 NPHP3Q7Z494 1330 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 CLCN6P51797 869 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 PRPF40BQ6NWY9 871 aaKnown RBP12.56□□□□□ -0.4
CCDC171-208ENST00000486641 FILIP1Q7Z7B0 1213 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 PGBD1Q96JS3 809 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 TSPYL1Q9H0U9 437 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 TPCN1Q9ULQ1 816 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 AATKQ6ZMQ8 1374 aa12.56□□□□□ -0.4
CCDC171-208ENST00000486641 TTC21BQ7Z4L5 1316 aa12.55□□□□□ -0.4
CCDC171-208ENST00000486641 GOLGA6L19H0YKK7 550 aa12.55□□□□□ -0.4
CCDC171-208ENST00000486641 RAD51AP2Q09MP3 1159 aa12.55□□□□□ -0.4
CCDC171-208ENST00000486641 CNTROBQ8N137 903 aa12.55□□□□□ -0.4
CCDC171-208ENST00000486641 POGZQ7Z3K3 1410 aa12.55□□□□□ -0.4
CCDC171-208ENST00000486641 PNMA6AP0CW24 399 aaPredicted RBP12.55□□□□□ -0.4
CCDC171-208ENST00000486641 C11orf57Q6ZUT1 292 aaPredicted RBP12.55□□□□□ -0.4
CCDC171-208ENST00000486641 CRB1P82279 1406 aa12.55□□□□□ -0.4
CCDC171-208ENST00000486641 BICD2Q8TD16 824 aa12.54□□□□□ -0.4
CCDC171-208ENST00000486641 SYTL4Q96C24 671 aaPredicted RBP12.54□□□□□ -0.4
CCDC171-208ENST00000486641 L2HGDHQ9H9P8 463 aa12.54□□□□□ -0.4
CCDC171-208ENST00000486641 KCND1Q9NSA2 647 aa12.54□□□□□ -0.4
CCDC171-208ENST00000486641 ATP7BP35670 1465 aa12.54□□□□□ -0.4
CCDC171-208ENST00000486641 SURF6O75683 361 aaKnown RBP12.54□□□□□ -0.4
CCDC171-208ENST00000486641 TM6SF1Q9BZW5 370 aa12.54□□□□□ -0.4
CCDC171-208ENST00000486641 SOS1Q07889 1333 aaPredicted RBP12.53□□□□□ -0.4
CCDC171-208ENST00000486641 HECW2Q9P2P5 1572 aa12.53□□□□□ -0.4
CCDC171-208ENST00000486641 HTATSF1O43719 755 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms