RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 NLGN2Q8NFZ4 835 aa9.28□□□□□ -0.92
VPS50-218ENST00000485994 PRKRIP1Q9H875 184 aaPredicted RBP9.28□□□□□ -0.92
VPS50-218ENST00000485994 BABAM1Q9NWV8 329 aa9.28□□□□□ -0.92
VPS50-218ENST00000485994 KIF13BQ9NQT8 1826 aa9.28□□□□□ -0.92
VPS50-218ENST00000485994 SNRPA1P09661 255 aaKnown RBP9.27□□□□□ -0.93
VPS50-218ENST00000485994 IL6STP40189 918 aaPredicted RBP9.27□□□□□ -0.93
VPS50-218ENST00000485994 NUBP1P53384 320 aa9.27□□□□□ -0.93
VPS50-218ENST00000485994 IER5LQ5T953 404 aa9.27□□□□□ -0.93
VPS50-218ENST00000485994 MCM10Q7L590 875 aa9.27□□□□□ -0.93
VPS50-218ENST00000485994 DLG5Q8TDM6 1919 aa9.27□□□□□ -0.93
VPS50-218ENST00000485994 RGL2O15211 777 aa9.26□□□□□ -0.93
VPS50-218ENST00000485994 MARVELD3Q96A59 401 aa9.26□□□□□ -0.93
VPS50-218ENST00000485994 ZBTB1Q9Y2K1 713 aa9.26□□□□□ -0.93
VPS50-218ENST00000485994 USP16Q9Y5T5 823 aa9.26□□□□□ -0.93
VPS50-218ENST00000485994 PARP3Q9Y6F1 533 aa9.26□□□□□ -0.93
VPS50-218ENST00000485994 GOLGB1Q14789 3259 aaKnown RBP9.26□□□□□ -0.93
VPS50-218ENST00000485994 KCNQ3O43525 872 aa9.25□□□□□ -0.93
VPS50-218ENST00000485994 MMRN1Q13201 1228 aa9.25□□□□□ -0.93
VPS50-218ENST00000485994 DCTN1Q14203 1278 aa9.25□□□□□ -0.93
VPS50-218ENST00000485994 FKBP8Q14318 412 aa9.25□□□□□ -0.93
VPS50-218ENST00000485994 USPL1Q5W0Q7 1092 aa9.25□□□□□ -0.93
VPS50-218ENST00000485994 KLHL34Q8N239 644 aa9.25□□□□□ -0.93
VPS50-218ENST00000485994 PLCD3Q8N3E9 789 aa9.25□□□□□ -0.93
VPS50-218ENST00000485994 SRP68Q9UHB9 627 aaKnown RBP9.25□□□□□ -0.93
VPS50-218ENST00000485994 C4AP0C0L4 1744 aa9.25□□□□□ -0.93
VPS50-218ENST00000485994 COL15A1P39059 1388 aa9.24□□□□□ -0.93
VPS50-218ENST00000485994 POLRMTO00411 1230 aaKnown RBP9.24□□□□□ -0.93
VPS50-218ENST00000485994 YBX3P16989 372 aaKnown RBP eCLIP9.24□□□□□ -0.93
VPS50-218ENST00000485994 TMPOP42166 694 aaKnown RBP9.24□□□□□ -0.93
VPS50-218ENST00000485994 IRX5P78411 483 aaPredicted RBP9.24□□□□□ -0.93
VPS50-218ENST00000485994 CLEC4GQ6UXB4 293 aa9.24□□□□□ -0.93
VPS50-218ENST00000485994 SPNS2Q8IVW8 549 aa9.24□□□□□ -0.93
VPS50-218ENST00000485994 BCL2L12Q9HB09 334 aa9.24□□□□□ -0.93
VPS50-218ENST00000485994 MAPK8IP3Q9UPT6 1336 aa9.24□□□□□ -0.93
VPS50-218ENST00000485994 ZNF316A6NFI3 1004 aaPredicted RBP9.23□□□□□ -0.93
VPS50-218ENST00000485994 A1BGP04217 495 aa9.23□□□□□ -0.93
VPS50-218ENST00000485994 PLCG2P16885 1265 aa9.23□□□□□ -0.93
VPS50-218ENST00000485994 KCNA3P22001 575 aa9.23□□□□□ -0.93
VPS50-218ENST00000485994 CANXP27824 592 aaKnown RBP9.23□□□□□ -0.93
VPS50-218ENST00000485994 RIPK4P57078 832 aa9.23□□□□□ -0.93
VPS50-218ENST00000485994 EIF4A1P60842 406 aaKnown RBP9.23□□□□□ -0.93
VPS50-218ENST00000485994 DDR1Q08345 913 aa9.23□□□□□ -0.93
VPS50-218ENST00000485994 LMOD3Q0VAK6 560 aa9.23□□□□□ -0.93
VPS50-218ENST00000485994 RUNDC1Q96C34 613 aa9.23□□□□□ -0.93
VPS50-218ENST00000485994 ADAMTS8Q9UP79 889 aa9.23□□□□□ -0.93
VPS50-218ENST00000485994 C10orf71Q711Q0 1435 aa9.22□□□□□ -0.93
VPS50-218ENST00000485994 GIGYF1O75420 1035 aaPredicted RBP9.22□□□□□ -0.93
VPS50-218ENST00000485994 SERPINB2P05120 415 aa9.22□□□□□ -0.93
VPS50-218ENST00000485994 NFIXQ14938 502 aa9.22□□□□□ -0.93
VPS50-218ENST00000485994 NPM2Q86SE8 214 aaKnown RBP9.22□□□□□ -0.93
VPS50-218ENST00000485994 PDZRN3Q9UPQ7 1066 aa9.22□□□□□ -0.93
VPS50-218ENST00000485994 A0A0G2JLW4 131 aa9.21□□□□□ -0.94
VPS50-218ENST00000485994 CAMTA2O94983 1202 aa9.21□□□□□ -0.94
VPS50-218ENST00000485994 WDR43Q15061 677 aaKnown RBP eCLIP9.21□□□□□ -0.94
VPS50-218ENST00000485994 PIM2Q9P1W9 311 aa9.21□□□□□ -0.94
VPS50-218ENST00000485994 NRXN2Q9P2S2 1712 aa9.21□□□□□ -0.94
VPS50-218ENST00000485994 PXDNLA1KZ92 1463 aa9.21□□□□□ -0.94
VPS50-218ENST00000485994 KIAA1551Q9HCM1 1747 aa9.2□□□□□ -0.94
VPS50-218ENST00000485994 AFDNP55196 1824 aaKnown RBP9.2□□□□□ -0.94
VPS50-218ENST00000485994 BRCA1P38398 1863 aaKnown RBP9.2□□□□□ -0.94
VPS50-218ENST00000485994 NBPF26B4DH59 902 aa9.2□□□□□ -0.94
VPS50-218ENST00000485994 CHL1O00533 1208 aa9.2□□□□□ -0.94
VPS50-218ENST00000485994 DPEP1P16444 411 aa9.2□□□□□ -0.94
VPS50-218ENST00000485994 NBPF10Q6P3W6 841 aaKnown RBP9.2□□□□□ -0.94
VPS50-218ENST00000485994 DZIP3Q86Y13 1208 aaKnown RBP9.2□□□□□ -0.94
VPS50-218ENST00000485994 NBPF15Q8N660 670 aa9.2□□□□□ -0.94
VPS50-218ENST00000485994 ZNF784Q8NCA9 323 aaPredicted RBP9.2□□□□□ -0.94
VPS50-218ENST00000485994 MIS18AQ9NYP9 233 aa9.2□□□□□ -0.94
VPS50-218ENST00000485994 TBC1D2BQ9UPU7 963 aa9.2□□□□□ -0.94
VPS50-218ENST00000485994 ERBB4Q15303 1308 aa9.2□□□□□ -0.94
VPS50-218ENST00000485994 KDM3BQ7LBC6 1761 aa9.19□□□□□ -0.94
VPS50-218ENST00000485994 PRAMEF22A3QJZ6 481 aa9.19□□□□□ -0.94
VPS50-218ENST00000485994 ERVV-1B6SEH8 477 aa9.19□□□□□ -0.94
VPS50-218ENST00000485994 TBC1D9BQ66K14 1250 aa9.19□□□□□ -0.94
VPS50-218ENST00000485994 SETDB2Q96T68 719 aa9.19□□□□□ -0.94
VPS50-218ENST00000485994 BRIP1Q9BX63 1249 aa9.19□□□□□ -0.94
VPS50-218ENST00000485994 N4BP2Q86UW6 1770 aaPredicted RBP9.19□□□□□ -0.94
VPS50-218ENST00000485994 THUMPD2Q9BTF0 503 aaKnown RBP9.18□□□□□ -0.94
VPS50-218ENST00000485994 ZNF652Q9Y2D9 606 aa9.18□□□□□ -0.94
VPS50-218ENST00000485994 ARFGEF1Q9Y6D6 1849 aa9.18□□□□□ -0.94
VPS50-218ENST00000485994 KLRG2A4D1S0 409 aaPredicted RBP9.17□□□□□ -0.94
VPS50-218ENST00000485994 ZNF853P0CG23 659 aa9.17□□□□□ -0.94
VPS50-218ENST00000485994 PDE6BP35913 854 aa9.17□□□□□ -0.94
VPS50-218ENST00000485994 PDIA6Q15084 440 aa9.17□□□□□ -0.94
VPS50-218ENST00000485994 DALRD3Q5D0E6 543 aaKnown RBP9.17□□□□□ -0.94
VPS50-218ENST00000485994 CFAP44Q96MT7 982 aa9.17□□□□□ -0.94
VPS50-218ENST00000485994 TSPYL4Q9UJ04 414 aa9.17□□□□□ -0.94
VPS50-218ENST00000485994 BCS1LQ9Y276 419 aa9.17□□□□□ -0.94
VPS50-218ENST00000485994 CARMIL3Q8ND23 1372 aa9.16□□□□□ -0.94
VPS50-218ENST00000485994 H0YIN7 160 aa9.16□□□□□ -0.94
VPS50-218ENST00000485994 HOXB7P09629 217 aa9.16□□□□□ -0.94
VPS50-218ENST00000485994 PRR5LQ6MZQ0 368 aa9.16□□□□□ -0.94
VPS50-218ENST00000485994 TPTE2Q6XPS3 522 aa9.16□□□□□ -0.94
VPS50-218ENST00000485994 LRP10Q7Z4F1 713 aa9.16□□□□□ -0.94
VPS50-218ENST00000485994 CCDC146Q8IYE0 955 aa9.16□□□□□ -0.94
VPS50-218ENST00000485994 PCDHB8Q9UN66 801 aa9.16□□□□□ -0.94
VPS50-218ENST00000485994 ADCY9O60503 1353 aa9.15□□□□□ -0.94
VPS50-218ENST00000485994 NUP98P52948 1817 aa9.15□□□□□ -0.94
VPS50-218ENST00000485994 MAP3K15Q6ZN16 1313 aa9.15□□□□□ -0.94
VPS50-218ENST00000485994 PYGBP11216 843 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms