RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 APLP1P51693 650 aa17.72■□□□□ 0.43
SMAD9-204ENST00000483941 AMIGO3Q86WK7 504 aa17.72■□□□□ 0.43
SMAD9-204ENST00000483941 N4BP2Q86UW6 1770 aaPredicted RBP17.71■□□□□ 0.43
SMAD9-204ENST00000483941 IRX6P78412 446 aaPredicted RBP17.71■□□□□ 0.43
SMAD9-204ENST00000483941 RBM42Q9BTD8 480 aaKnown RBP17.71■□□□□ 0.43
SMAD9-204ENST00000483941 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.7■□□□□ 0.42
SMAD9-204ENST00000483941 TCERG1O14776 1098 aaKnown RBP17.7■□□□□ 0.42
SMAD9-204ENST00000483941 FLIIQ13045 1269 aa17.7■□□□□ 0.42
SMAD9-204ENST00000483941 PPP4R2Q9NY27 417 aa17.7■□□□□ 0.42
SMAD9-204ENST00000483941 CHPF2Q9P2E5 772 aa17.7■□□□□ 0.42
SMAD9-204ENST00000483941 DDX19BQ9UMR2 479 aa17.7■□□□□ 0.42
SMAD9-204ENST00000483941 CACNA1FO60840 1977 aa17.7■□□□□ 0.42
SMAD9-204ENST00000483941 PCNTO95613 3336 aa17.69■□□□□ 0.42
SMAD9-204ENST00000483941 FKBP5Q13451 457 aaPredicted RBP17.69■□□□□ 0.42
SMAD9-204ENST00000483941 NECTIN2Q92692 538 aa17.69■□□□□ 0.42
SMAD9-204ENST00000483941 SSFA2P28290 1259 aa17.68■□□□□ 0.42
SMAD9-204ENST00000483941 MVPQ14764 893 aaKnown RBP17.68■□□□□ 0.42
SMAD9-204ENST00000483941 CRBNQ96SW2 442 aa17.68■□□□□ 0.42
SMAD9-204ENST00000483941 USP16Q9Y5T5 823 aa17.68■□□□□ 0.42
SMAD9-204ENST00000483941 PXDNLA1KZ92 1463 aa17.68■□□□□ 0.42
SMAD9-204ENST00000483941 KCPQ6ZWJ8 1503 aa17.67■□□□□ 0.42
SMAD9-204ENST00000483941 BRCA1P38398 1863 aaKnown RBP17.67■□□□□ 0.42
SMAD9-204ENST00000483941 CCT4P50991 539 aaKnown RBP17.67■□□□□ 0.42
SMAD9-204ENST00000483941 SMIM5Q71RC9 77 aa17.67■□□□□ 0.42
SMAD9-204ENST00000483941 NPM2Q86SE8 214 aaKnown RBP17.67■□□□□ 0.42
SMAD9-204ENST00000483941 PANK1Q8TE04 598 aa17.67■□□□□ 0.42
SMAD9-204ENST00000483941 CLUAP1Q96AJ1 413 aa17.67■□□□□ 0.42
SMAD9-204ENST00000483941 ABCC4O15439 1325 aa17.67■□□□□ 0.42
SMAD9-204ENST00000483941 LOC102724428A0A0B4J2F2 783 aa17.66■□□□□ 0.42
SMAD9-204ENST00000483941 SIK1P57059 783 aa17.66■□□□□ 0.42
SMAD9-204ENST00000483941 C20orf194Q5TEA3 1177 aa17.66■□□□□ 0.42
SMAD9-204ENST00000483941 UBR2Q8IWV8 1755 aa17.66■□□□□ 0.42
SMAD9-204ENST00000483941 TOMM70O94826 608 aa17.65■□□□□ 0.42
SMAD9-204ENST00000483941 INTS3Q68E01 1043 aaKnown RBP17.65■□□□□ 0.42
SMAD9-204ENST00000483941 ITPRIPQ8IWB1 547 aa17.65■□□□□ 0.42
SMAD9-204ENST00000483941 EXOC6Q8TAG9 804 aa17.65■□□□□ 0.42
SMAD9-204ENST00000483941 COG6Q9Y2V7 657 aa17.65■□□□□ 0.42
SMAD9-204ENST00000483941 PRAMEF22A3QJZ6 481 aa17.64■□□□□ 0.41
SMAD9-204ENST00000483941 ATP6V1AP38606 617 aa17.64■□□□□ 0.41
SMAD9-204ENST00000483941 DNAJC5GQ8N7S2 189 aa17.64■□□□□ 0.41
SMAD9-204ENST00000483941 LINC00116Q8NCU8 138 aa17.64■□□□□ 0.41
SMAD9-204ENST00000483941 ARFGEF1Q9Y6D6 1849 aa17.63■□□□□ 0.41
SMAD9-204ENST00000483941 PDIA6Q15084 440 aa17.63■□□□□ 0.41
SMAD9-204ENST00000483941 KSR2Q6VAB6 950 aa17.63■□□□□ 0.41
SMAD9-204ENST00000483941 G2E3Q7L622 706 aa17.63■□□□□ 0.41
SMAD9-204ENST00000483941 DNAJC10Q8IXB1 793 aa17.63■□□□□ 0.41
SMAD9-204ENST00000483941 TMEM57Q8N5G2 664 aa17.63■□□□□ 0.41
SMAD9-204ENST00000483941 C10orf71Q711Q0 1435 aa17.63■□□□□ 0.41
SMAD9-204ENST00000483941 C4AP0C0L4 1744 aa17.62■□□□□ 0.41
SMAD9-204ENST00000483941 GNPATO15228 680 aa17.62■□□□□ 0.41
SMAD9-204ENST00000483941 RLBP1P12271 317 aa17.62■□□□□ 0.41
SMAD9-204ENST00000483941 HDAC5Q9UQL6 1122 aa17.62■□□□□ 0.41
SMAD9-204ENST00000483941 MMP10P09238 476 aa17.61■□□□□ 0.41
SMAD9-204ENST00000483941 CYP19A1P11511 503 aaPredicted RBP17.61■□□□□ 0.41
SMAD9-204ENST00000483941 MYL6BP14649 208 aa17.61■□□□□ 0.41
SMAD9-204ENST00000483941 NEXNQ0ZGT2 675 aa17.61■□□□□ 0.41
SMAD9-204ENST00000483941 RIC3Q7Z5B4 369 aa17.61■□□□□ 0.41
SMAD9-204ENST00000483941 DNAAF4Q8WXU2 420 aa17.61■□□□□ 0.41
SMAD9-204ENST00000483941 CCDC136Q96JN2 1154 aa17.61■□□□□ 0.41
SMAD9-204ENST00000483941 PHAXQ9H814 394 aaKnown RBP17.61■□□□□ 0.41
SMAD9-204ENST00000483941 SLC4A10Q6U841 1118 aa17.6■□□□□ 0.41
SMAD9-204ENST00000483941 ANKRD13DQ6ZTN6 518 aa17.6■□□□□ 0.41
SMAD9-204ENST00000483941 COPS6Q7L5N1 327 aa17.6■□□□□ 0.41
SMAD9-204ENST00000483941 NMRK2Q9NPI5 230 aa17.6■□□□□ 0.41
SMAD9-204ENST00000483941 BCS1LQ9Y276 419 aa17.6■□□□□ 0.41
SMAD9-204ENST00000483941 COL5A3P25940 1745 aaPredicted RBP17.6■□□□□ 0.41
SMAD9-204ENST00000483941 LAMB4A4D0S4 1761 aa17.6■□□□□ 0.41
SMAD9-204ENST00000483941 ZNF831Q5JPB2 1677 aa17.59■□□□□ 0.41
SMAD9-204ENST00000483941 TNRC6CQ9HCJ0 1690 aaKnown RBP17.59■□□□□ 0.41
SMAD9-204ENST00000483941 PI4KAP2A4QPH2 592 aa17.59■□□□□ 0.41
SMAD9-204ENST00000483941 A1BGP04217 495 aa17.59■□□□□ 0.41
SMAD9-204ENST00000483941 IL6STP40189 918 aaPredicted RBP17.59■□□□□ 0.41
SMAD9-204ENST00000483941 PROSER3Q2NL68 480 aa17.59■□□□□ 0.41
SMAD9-204ENST00000483941 KIF6Q6ZMV9 814 aa17.59■□□□□ 0.41
SMAD9-204ENST00000483941 PI4KAP1Q8N8J0 262 aa17.59■□□□□ 0.41
SMAD9-204ENST00000483941 XAGE3Q8WTP9 111 aa17.59■□□□□ 0.41
SMAD9-204ENST00000483941 ANXA1P04083 346 aa17.58■□□□□ 0.4
SMAD9-204ENST00000483941 TGFB2P61812 414 aa17.58■□□□□ 0.4
SMAD9-204ENST00000483941 AIMP1Q12904 312 aaKnown RBP17.58■□□□□ 0.4
SMAD9-204ENST00000483941 ITPK1Q13572 414 aa17.58■□□□□ 0.4
SMAD9-204ENST00000483941 PLBD2Q8NHP8 589 aa17.58■□□□□ 0.4
SMAD9-204ENST00000483941 SRCIN1Q9C0H9 1055 aa17.58■□□□□ 0.4
SMAD9-204ENST00000483941 CCDC87Q9NVE4 849 aa17.58■□□□□ 0.4
SMAD9-204ENST00000483941 A0A087WZG4 1122 aa17.57■□□□□ 0.4
SMAD9-204ENST00000483941 ALDH1L1O75891 902 aa17.57■□□□□ 0.4
SMAD9-204ENST00000483941 GNAI3P08754 354 aa17.57■□□□□ 0.4
SMAD9-204ENST00000483941 RC3H1Q5TC82 1133 aaKnown RBP17.57■□□□□ 0.4
SMAD9-204ENST00000483941 ARHGAP27Q6ZUM4 889 aa17.57■□□□□ 0.4
SMAD9-204ENST00000483941 RBM46Q8TBY0 533 aaKnown RBP17.57■□□□□ 0.4
SMAD9-204ENST00000483941 SLC4A9Q96Q91 983 aa17.57■□□□□ 0.4
SMAD9-204ENST00000483941 TNNQ9UQP3 1299 aa17.57■□□□□ 0.4
SMAD9-204ENST00000483941 MAP3K2Q9Y2U5 619 aa17.57■□□□□ 0.4
SMAD9-204ENST00000483941 IBTKQ9P2D0 1353 aaPredicted RBP17.56■□□□□ 0.4
SMAD9-204ENST00000483941 A0A0G2JLW4 131 aa17.56■□□□□ 0.4
SMAD9-204ENST00000483941 NBPF26B4DH59 902 aa17.56■□□□□ 0.4
SMAD9-204ENST00000483941 F6X3S4 739 aa17.56■□□□□ 0.4
SMAD9-204ENST00000483941 ZBTB7BO15156 539 aaPredicted RBP17.56■□□□□ 0.4
SMAD9-204ENST00000483941 NBPF10Q6P3W6 841 aaKnown RBP17.56■□□□□ 0.4
SMAD9-204ENST00000483941 LRP10Q7Z4F1 713 aa17.56■□□□□ 0.4
SMAD9-204ENST00000483941 C16orf71Q8IYS4 520 aaPredicted RBP17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms