RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 SENP3-EIF4A1A0A087X0R7 540 aa23.37■■□□□ 1.33
HDAC6-225ENST00000483506 GPR162Q16538 588 aa23.37■■□□□ 1.33
HDAC6-225ENST00000483506 BICDL1Q6ZP65 573 aa23.37■■□□□ 1.33
HDAC6-225ENST00000483506 TTLL7Q6ZT98 887 aa23.37■■□□□ 1.33
HDAC6-225ENST00000483506 SETDB2Q96T68 719 aa23.37■■□□□ 1.33
HDAC6-225ENST00000483506 DDX21Q9NR30 783 aaKnown RBP eCLIP23.37■■□□□ 1.33
HDAC6-225ENST00000483506 ATP10DQ9P241 1426 aa23.36■■□□□ 1.33
HDAC6-225ENST00000483506 YBX3P16989 372 aaKnown RBP eCLIP23.36■■□□□ 1.33
HDAC6-225ENST00000483506 HLFQ16534 295 aa23.36■■□□□ 1.33
HDAC6-225ENST00000483506 HDGFL1Q5TGJ6 251 aa23.36■■□□□ 1.33
HDAC6-225ENST00000483506 KIF6Q6ZMV9 814 aa23.36■■□□□ 1.33
HDAC6-225ENST00000483506 ANKRD31Q8N7Z5 1873 aa23.35■■□□□ 1.33
HDAC6-225ENST00000483506 DIEXFQ68CQ4 756 aaKnown RBP23.35■■□□□ 1.33
HDAC6-225ENST00000483506 DLEC1Q9Y238 1755 aa23.35■■□□□ 1.33
HDAC6-225ENST00000483506 DPEP1P16444 411 aa23.34■■□□□ 1.33
HDAC6-225ENST00000483506 KCNA3P22001 575 aa23.34■■□□□ 1.33
HDAC6-225ENST00000483506 C8orf58Q8NAV2 365 aa23.34■■□□□ 1.33
HDAC6-225ENST00000483506 A0A0G2JLW4 131 aa23.33■■□□□ 1.33
HDAC6-225ENST00000483506 ANXA1P04083 346 aa23.33■■□□□ 1.33
HDAC6-225ENST00000483506 PRR5LQ6MZQ0 368 aa23.33■■□□□ 1.33
HDAC6-225ENST00000483506 NECTIN2Q92692 538 aa23.33■■□□□ 1.33
HDAC6-225ENST00000483506 CHPF2Q9P2E5 772 aa23.33■■□□□ 1.33
HDAC6-225ENST00000483506 DBF4Q9UBU7 674 aaPredicted RBP23.33■■□□□ 1.33
HDAC6-225ENST00000483506 CHD4Q14839 1912 aa23.33■■□□□ 1.32
HDAC6-225ENST00000483506 ZNF521Q96K83 1311 aa23.33■■□□□ 1.32
HDAC6-225ENST00000483506 GRIN3BO60391 1043 aa23.32■■□□□ 1.32
HDAC6-225ENST00000483506 TSR2Q969E8 191 aaKnown RBP23.32■■□□□ 1.32
HDAC6-225ENST00000483506 GIGYF2Q6Y7W6 1299 aaKnown RBP23.31■■□□□ 1.32
HDAC6-225ENST00000483506 CNBD1Q8NA66 436 aa23.31■■□□□ 1.32
HDAC6-225ENST00000483506 NIP7Q9Y221 180 aaKnown RBP eCLIP23.31■■□□□ 1.32
HDAC6-225ENST00000483506 IBTKQ9P2D0 1353 aaPredicted RBP23.3■■□□□ 1.32
HDAC6-225ENST00000483506 ANKRD36CQ5JPF3 1778 aa23.3■■□□□ 1.32
HDAC6-225ENST00000483506 COPS6Q7L5N1 327 aa23.3■■□□□ 1.32
HDAC6-225ENST00000483506 PELP1Q8IZL8 1130 aaKnown RBP23.3■■□□□ 1.32
HDAC6-225ENST00000483506 BRIP1Q9BX63 1249 aa23.3■■□□□ 1.32
HDAC6-225ENST00000483506 CHMP4AQ9BY43 222 aa23.3■■□□□ 1.32
HDAC6-225ENST00000483506 ZBTB3Q9H5J0 574 aa23.3■■□□□ 1.32
HDAC6-225ENST00000483506 SALL2Q9Y467 1007 aaPredicted RBP23.3■■□□□ 1.32
HDAC6-225ENST00000483506 ARFGEF1Q9Y6D6 1849 aa23.3■■□□□ 1.32
HDAC6-225ENST00000483506 FANCIQ9NVI1 1328 aa23.3■■□□□ 1.32
HDAC6-225ENST00000483506 TSPYL6Q8N831 410 aa23.29■■□□□ 1.32
HDAC6-225ENST00000483506 XAGE3Q8WTP9 111 aa23.29■■□□□ 1.32
HDAC6-225ENST00000483506 HYPKQ9NX55 129 aa23.29■■□□□ 1.32
HDAC6-225ENST00000483506 PDZRN3Q9UPQ7 1066 aa23.29■■□□□ 1.32
HDAC6-225ENST00000483506 NBPF5PQ86XG9 351 aaPredicted RBP23.28■■□□□ 1.32
HDAC6-225ENST00000483506 ZNF34Q8IZ26 560 aa23.28■■□□□ 1.32
HDAC6-225ENST00000483506 COL11A2P13942 1736 aaPredicted RBP23.28■■□□□ 1.32
HDAC6-225ENST00000483506 ELL2O00472 640 aaPredicted RBP23.27■■□□□ 1.32
HDAC6-225ENST00000483506 CHRNA5P30532 468 aa23.27■■□□□ 1.32
HDAC6-225ENST00000483506 PIM2Q9P1W9 311 aa23.27■■□□□ 1.32
HDAC6-225ENST00000483506 UBN2Q6ZU65 1347 aa23.27■■□□□ 1.32
HDAC6-225ENST00000483506 PDE6BP35913 854 aa23.26■■□□□ 1.31
HDAC6-225ENST00000483506 ST5P78524 1137 aa23.26■■□□□ 1.31
HDAC6-225ENST00000483506 TPTE2Q6XPS3 522 aa23.26■■□□□ 1.31
HDAC6-225ENST00000483506 SPINK5Q9NQ38 1064 aaPredicted RBP23.26■■□□□ 1.31
HDAC6-225ENST00000483506 CCDC30Q5VVM6 783 aa23.25■■□□□ 1.31
HDAC6-225ENST00000483506 MIER1Q8N108 512 aa23.25■■□□□ 1.31
HDAC6-225ENST00000483506 AIMP1Q12904 312 aaKnown RBP23.24■■□□□ 1.31
HDAC6-225ENST00000483506 TWISTNBQ3B726 338 aaPredicted RBP23.24■■□□□ 1.31
HDAC6-225ENST00000483506 HSP90AB3PQ58FF7 597 aa23.24■■□□□ 1.31
HDAC6-225ENST00000483506 PLBD2Q8NHP8 589 aa23.24■■□□□ 1.31
HDAC6-225ENST00000483506 NYXQ9GZU5 481 aa23.24■■□□□ 1.31
HDAC6-225ENST00000483506 RIC1Q4ADV7 1423 aa23.24■■□□□ 1.31
HDAC6-225ENST00000483506 ARFGEF2Q9Y6D5 1785 aa23.23■■□□□ 1.31
HDAC6-225ENST00000483506 KLRG2A4D1S0 409 aaPredicted RBP23.23■■□□□ 1.31
HDAC6-225ENST00000483506 H0YIN7 160 aa23.23■■□□□ 1.31
HDAC6-225ENST00000483506 GOLGA2Q08379 1002 aa23.23■■□□□ 1.31
HDAC6-225ENST00000483506 PARP10Q53GL7 1025 aa23.23■■□□□ 1.31
HDAC6-225ENST00000483506 DALRD3Q5D0E6 543 aaKnown RBP23.23■■□□□ 1.31
HDAC6-225ENST00000483506 C2CD5Q86YS7 1000 aa23.23■■□□□ 1.31
HDAC6-225ENST00000483506 MYH16Q9H6N6 1097 aa23.23■■□□□ 1.31
HDAC6-225ENST00000483506 WWC3Q9ULE0 1092 aa23.23■■□□□ 1.31
HDAC6-225ENST00000483506 BCS1LQ9Y276 419 aa23.23■■□□□ 1.31
HDAC6-225ENST00000483506 NPHP1O15259 732 aa23.22■■□□□ 1.31
HDAC6-225ENST00000483506 ANKRD13DQ6ZTN6 518 aa23.22■■□□□ 1.31
HDAC6-225ENST00000483506 CCDC24Q8N4L8 307 aa23.22■■□□□ 1.31
HDAC6-225ENST00000483506 CACNA1FO60840 1977 aa23.21■■□□□ 1.31
HDAC6-225ENST00000483506 GPTP24298 496 aa23.21■■□□□ 1.31
HDAC6-225ENST00000483506 TCIRG1Q13488 830 aa23.21■■□□□ 1.31
HDAC6-225ENST00000483506 TNRC6CQ9HCJ0 1690 aaKnown RBP23.2■■□□□ 1.3
HDAC6-225ENST00000483506 RNF123Q5XPI4 1314 aa23.2■■□□□ 1.3
HDAC6-225ENST00000483506 NTSR2O95665 410 aa23.2■■□□□ 1.3
HDAC6-225ENST00000483506 YY1P25490 414 aa23.2■■□□□ 1.3
HDAC6-225ENST00000483506 SUSD4Q5VX71 490 aa23.2■■□□□ 1.3
HDAC6-225ENST00000483506 ABCC12Q96J65 1359 aa23.19■■□□□ 1.3
HDAC6-225ENST00000483506 SRGNP10124 158 aa23.19■■□□□ 1.3
HDAC6-225ENST00000483506 EXOSC9Q06265 439 aaKnown RBP23.19■■□□□ 1.3
HDAC6-225ENST00000483506 PPP1R42Q7Z4L9 355 aa23.19■■□□□ 1.3
HDAC6-225ENST00000483506 PHAXQ9H814 394 aaKnown RBP23.19■■□□□ 1.3
HDAC6-225ENST00000483506 VAMP4O75379 141 aa23.18■■□□□ 1.3
HDAC6-225ENST00000483506 STYK1Q6J9G0 422 aa23.18■■□□□ 1.3
HDAC6-225ENST00000483506 TTLL6Q8N841 843 aa23.18■■□□□ 1.3
HDAC6-225ENST00000483506 FAM177BA6PVY3 158 aa23.17■■□□□ 1.3
HDAC6-225ENST00000483506 NLRP10Q86W26 655 aa23.17■■□□□ 1.3
HDAC6-225ENST00000483506 ISCA1Q9BUE6 129 aa23.17■■□□□ 1.3
HDAC6-225ENST00000483506 STK31Q9BXU1 1019 aa23.17■■□□□ 1.3
HDAC6-225ENST00000483506 ERFEQ4G0M1 354 aa23.16■■□□□ 1.3
HDAC6-225ENST00000483506 NUTM1Q86Y26 1132 aa23.16■■□□□ 1.3
HDAC6-225ENST00000483506 MASTLQ96GX5 879 aa23.16■■□□□ 1.3
HDAC6-225ENST00000483506 UTP14AQ9BVJ6 771 aaKnown RBP23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms