RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 NUP98P52948 1817 aa18.58■□□□□ 0.57
UPF3A-204ENST00000475218 RGL2O15211 777 aa18.58■□□□□ 0.57
UPF3A-204ENST00000475218 TSPYL4Q9UJ04 414 aa18.58■□□□□ 0.57
UPF3A-204ENST00000475218 TTLL7Q6ZT98 887 aa18.58■□□□□ 0.56
UPF3A-204ENST00000475218 RUNDC1Q96C34 613 aa18.58■□□□□ 0.56
UPF3A-204ENST00000475218 SLX4Q8IY92 1834 aa18.57■□□□□ 0.56
UPF3A-204ENST00000475218 PDE6BP35913 854 aa18.57■□□□□ 0.56
UPF3A-204ENST00000475218 ARFGEF2Q9Y6D5 1785 aa18.56■□□□□ 0.56
UPF3A-204ENST00000475218 NFKBIEO00221 500 aa18.56■□□□□ 0.56
UPF3A-204ENST00000475218 CACNA1SQ13698 1873 aa18.56■□□□□ 0.56
UPF3A-204ENST00000475218 PDIA6Q15084 440 aa18.56■□□□□ 0.56
UPF3A-204ENST00000475218 NEUROD2Q15784 382 aa18.56■□□□□ 0.56
UPF3A-204ENST00000475218 NGEFQ8N5V2 710 aa18.56■□□□□ 0.56
UPF3A-204ENST00000475218 SRGNP10124 158 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 BABAM1Q9NWV8 329 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 RNF181Q9P0P0 153 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 NIP7Q9Y221 180 aaKnown RBP eCLIP18.55■□□□□ 0.56
UPF3A-204ENST00000475218 ZNF652Q9Y2D9 606 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 TNRC6CQ9HCJ0 1690 aaKnown RBP18.55■□□□□ 0.56
UPF3A-204ENST00000475218 FER1L6Q2WGJ9 1857 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 SENP3-EIF4A1A0A087X0R7 540 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 MYL6BP14649 208 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 WDR43Q15061 677 aaKnown RBP eCLIP18.55■□□□□ 0.56
UPF3A-204ENST00000475218 KRT24Q2M2I5 525 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 NBPF5PQ86XG9 351 aaPredicted RBP18.55■□□□□ 0.56
UPF3A-204ENST00000475218 ZNF622Q969S3 477 aaKnown RBP eCLIP18.55■□□□□ 0.562e-6■■□□□ 12.5
UPF3A-204ENST00000475218 NMRK2Q9NPI5 230 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 CCDC88AQ3V6T2 1871 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 MAP3K15Q6ZN16 1313 aa18.55■□□□□ 0.56
UPF3A-204ENST00000475218 KLRG2A4D1S0 409 aaPredicted RBP18.54■□□□□ 0.56
UPF3A-204ENST00000475218 CHL1O00533 1208 aa18.54■□□□□ 0.56
UPF3A-204ENST00000475218 LMOD3Q0VAK6 560 aa18.54■□□□□ 0.56
UPF3A-204ENST00000475218 PROSER3Q2NL68 480 aa18.54■□□□□ 0.56
UPF3A-204ENST00000475218 PDZRN3Q9UPQ7 1066 aa18.54■□□□□ 0.56
UPF3A-204ENST00000475218 ERVV-1B6SEH8 477 aa18.53■□□□□ 0.56
UPF3A-204ENST00000475218 ST5P78524 1137 aa18.53■□□□□ 0.56
UPF3A-204ENST00000475218 CCDC184Q52MB2 194 aa18.53■□□□□ 0.56
UPF3A-204ENST00000475218 ERBB4Q15303 1308 aa18.52■□□□□ 0.56
UPF3A-204ENST00000475218 UBN2Q6ZU65 1347 aa18.52■□□□□ 0.56
UPF3A-204ENST00000475218 TIAM2Q8IVF5 1701 aa18.52■□□□□ 0.56
UPF3A-204ENST00000475218 C21orf2O43822 256 aa18.52■□□□□ 0.55
UPF3A-204ENST00000475218 ANXA1P04083 346 aa18.52■□□□□ 0.55
UPF3A-204ENST00000475218 STYK1Q6J9G0 422 aa18.52■□□□□ 0.55
UPF3A-204ENST00000475218 ABCC12Q96J65 1359 aa18.52■□□□□ 0.55
UPF3A-204ENST00000475218 FAM177BA6PVY3 158 aa18.51■□□□□ 0.55
UPF3A-204ENST00000475218 ZBTB3Q9H5J0 574 aa18.51■□□□□ 0.55
UPF3A-204ENST00000475218 ZNF219Q9P2Y4 722 aaPredicted RBP18.51■□□□□ 0.55
UPF3A-204ENST00000475218 EIF2S2P20042 333 aaKnown RBP18.5■□□□□ 0.55
UPF3A-204ENST00000475218 LMNB1P20700 586 aa18.5■□□□□ 0.55
UPF3A-204ENST00000475218 PRPF40BQ6NWY9 871 aaKnown RBP18.5■□□□□ 0.55
UPF3A-204ENST00000475218 C7orf43Q8WVR3 580 aa18.5■□□□□ 0.55
UPF3A-204ENST00000475218 MASTLQ96GX5 879 aa18.5■□□□□ 0.55
UPF3A-204ENST00000475218 NPHP1O15259 732 aa18.5■□□□□ 0.55
UPF3A-204ENST00000475218 TPTE2Q6XPS3 522 aa18.5■□□□□ 0.55
UPF3A-204ENST00000475218 ZNF34Q8IZ26 560 aa18.49■□□□□ 0.55
UPF3A-204ENST00000475218 DICER1Q9UPY3 1922 aaKnown RBP18.48■□□□□ 0.55
UPF3A-204ENST00000475218 KIF6Q6ZMV9 814 aa18.48■□□□□ 0.55
UPF3A-204ENST00000475218 NUTM1Q86Y26 1132 aa18.48■□□□□ 0.55
UPF3A-204ENST00000475218 CNKSR1Q969H4 720 aa18.48■□□□□ 0.55
UPF3A-204ENST00000475218 APAF1O14727 1248 aa18.47■□□□□ 0.55
UPF3A-204ENST00000475218 GPTP24298 496 aa18.47■□□□□ 0.55
UPF3A-204ENST00000475218 SUSD4Q5VX71 490 aa18.47■□□□□ 0.55
UPF3A-204ENST00000475218 GIGYF2Q6Y7W6 1299 aaKnown RBP18.47■□□□□ 0.55
UPF3A-204ENST00000475218 NECTIN2Q92692 538 aa18.47■□□□□ 0.55
UPF3A-204ENST00000475218 ZEB1P37275 1124 aaPredicted RBP18.47■□□□□ 0.55
UPF3A-204ENST00000475218 ERFEQ4G0M1 354 aa18.47■□□□□ 0.55
UPF3A-204ENST00000475218 IBTKQ9P2D0 1353 aaPredicted RBP18.46■□□□□ 0.55
UPF3A-204ENST00000475218 LTBP3Q9NS15 1303 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 ZC3H4Q9UPT8 1303 aaKnown RBP18.46■□□□□ 0.55
UPF3A-204ENST00000475218 NTSR2O95665 410 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 ZNF853P0CG23 659 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 NPR1P16066 1061 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 CRY2Q49AN0 593 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 OLFM4Q6UX06 510 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 LAS1LQ9Y4W2 734 aaKnown RBP18.46■□□□□ 0.55
UPF3A-204ENST00000475218 RIC1Q4ADV7 1423 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 ANKRD36CQ5JPF3 1778 aa18.46■□□□□ 0.55
UPF3A-204ENST00000475218 SNED1Q8TER0 1413 aa18.45■□□□□ 0.54
UPF3A-204ENST00000475218 TOMM70O94826 608 aa18.45■□□□□ 0.54
UPF3A-204ENST00000475218 C3orf67Q6ZVT6 689 aa18.45■□□□□ 0.54
UPF3A-204ENST00000475218 CFAP44Q96MT7 982 aa18.45■□□□□ 0.54
UPF3A-204ENST00000475218 HSPA6P17066 643 aa18.44■□□□□ 0.54
UPF3A-204ENST00000475218 COPS6Q7L5N1 327 aa18.44■□□□□ 0.54
UPF3A-204ENST00000475218 SLC51AQ86UW1 340 aa18.44■□□□□ 0.54
UPF3A-204ENST00000475218 MBIPQ9NS73 344 aa18.44■□□□□ 0.54
UPF3A-204ENST00000475218 KDM2BQ8NHM5 1336 aa18.43■□□□□ 0.54
UPF3A-204ENST00000475218 XAGE3Q8WTP9 111 aa18.43■□□□□ 0.54
UPF3A-204ENST00000475218 NYXQ9GZU5 481 aa18.43■□□□□ 0.54
UPF3A-204ENST00000475218 RRAGCQ9HB90 399 aa18.43■□□□□ 0.54
UPF3A-204ENST00000475218 DDX21Q9NR30 783 aaKnown RBP eCLIP18.43■□□□□ 0.54
UPF3A-204ENST00000475218 GLTPD2A6NH11 291 aa18.42■□□□□ 0.54
UPF3A-204ENST00000475218 TAOK3Q9H2K8 898 aa18.42■□□□□ 0.54
UPF3A-204ENST00000475218 CHPF2Q9P2E5 772 aa18.42■□□□□ 0.54
UPF3A-204ENST00000475218 POTECB2RU33 542 aa18.42■□□□□ 0.54
UPF3A-204ENST00000475218 ZNF316A6NFI3 1004 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-204ENST00000475218 HOXB7P09629 217 aa18.4■□□□□ 0.54
UPF3A-204ENST00000475218 GTF2E1P29083 439 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-204ENST00000475218 HOXA10P31260 410 aaPredicted RBP18.4■□□□□ 0.54
UPF3A-204ENST00000475218 AIMP1Q12904 312 aaKnown RBP18.4■□□□□ 0.54
UPF3A-204ENST00000475218 WDR90Q96KV7 1748 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms