RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 NUP98P52948 1817 aa24.47■■□□□ 1.51
COL7A1-209ENST00000474432 PDZRN3Q9UPQ7 1066 aa24.46■■□□□ 1.51
COL7A1-209ENST00000474432 CCDC88AQ3V6T2 1871 aa24.45■■□□□ 1.51
COL7A1-209ENST00000474432 SLX4Q8IY92 1834 aa24.45■■□□□ 1.5
COL7A1-209ENST00000474432 RNF181Q9P0P0 153 aa24.45■■□□□ 1.5
COL7A1-209ENST00000474432 TSPYL4Q9UJ04 414 aa24.45■■□□□ 1.5
COL7A1-209ENST00000474432 TRIM35Q9UPQ4 493 aa24.45■■□□□ 1.5
COL7A1-209ENST00000474432 ZNF652Q9Y2D9 606 aa24.45■■□□□ 1.5
COL7A1-209ENST00000474432 NFKBIEO00221 500 aa24.44■■□□□ 1.5
COL7A1-209ENST00000474432 SRGNP10124 158 aa24.44■■□□□ 1.5
COL7A1-209ENST00000474432 TTLL7Q6ZT98 887 aa24.44■■□□□ 1.5
COL7A1-209ENST00000474432 LRP10Q7Z4F1 713 aa24.44■■□□□ 1.5
COL7A1-209ENST00000474432 ZNF622Q969S3 477 aaKnown RBP eCLIP24.44■■□□□ 1.5
COL7A1-209ENST00000474432 RUNDC1Q96C34 613 aa24.44■■□□□ 1.5
COL7A1-209ENST00000474432 BABAM1Q9NWV8 329 aa24.44■■□□□ 1.5
COL7A1-209ENST00000474432 NIP7Q9Y221 180 aaKnown RBP eCLIP24.44■■□□□ 1.5
COL7A1-209ENST00000474432 FER1L6Q2WGJ9 1857 aa24.44■■□□□ 1.5
COL7A1-209ENST00000474432 ARFGEF2Q9Y6D5 1785 aa24.44■■□□□ 1.5
COL7A1-209ENST00000474432 CACNA1SQ13698 1873 aa24.43■■□□□ 1.5
COL7A1-209ENST00000474432 PDIA6Q15084 440 aa24.43■■□□□ 1.5
COL7A1-209ENST00000474432 NBPF5PQ86XG9 351 aaPredicted RBP24.43■■□□□ 1.5
COL7A1-209ENST00000474432 NGEFQ8N5V2 710 aa24.43■■□□□ 1.5
COL7A1-209ENST00000474432 NMRK2Q9NPI5 230 aa24.43■■□□□ 1.5
COL7A1-209ENST00000474432 KLRG2A4D1S0 409 aaPredicted RBP24.42■■□□□ 1.5
COL7A1-209ENST00000474432 ST5P78524 1137 aa24.42■■□□□ 1.5
COL7A1-209ENST00000474432 MAP3K15Q6ZN16 1313 aa24.41■■□□□ 1.5
COL7A1-209ENST00000474432 ERVV-1B6SEH8 477 aa24.41■■□□□ 1.5
COL7A1-209ENST00000474432 MYL6BP14649 208 aa24.41■■□□□ 1.5
COL7A1-209ENST00000474432 LMOD3Q0VAK6 560 aa24.41■■□□□ 1.5
COL7A1-209ENST00000474432 NEUROD2Q15784 382 aa24.41■■□□□ 1.5
COL7A1-209ENST00000474432 STYK1Q6J9G0 422 aa24.41■■□□□ 1.5
COL7A1-209ENST00000474432 ERBB4Q15303 1308 aa24.4■■□□□ 1.5
COL7A1-209ENST00000474432 CHL1O00533 1208 aa24.4■■□□□ 1.5
COL7A1-209ENST00000474432 WDR43Q15061 677 aaKnown RBP eCLIP24.4■■□□□ 1.5
COL7A1-209ENST00000474432 C21orf2O43822 256 aa24.39■■□□□ 1.49
COL7A1-209ENST00000474432 TPTE2Q6XPS3 522 aa24.39■■□□□ 1.49
COL7A1-209ENST00000474432 TNRC6CQ9HCJ0 1690 aaKnown RBP24.38■■□□□ 1.49
COL7A1-209ENST00000474432 LMNB1P20700 586 aa24.38■■□□□ 1.49
COL7A1-209ENST00000474432 MASTLQ96GX5 879 aa24.38■■□□□ 1.49
COL7A1-209ENST00000474432 FAM177BA6PVY3 158 aa24.37■■□□□ 1.49
COL7A1-209ENST00000474432 NPHP1O15259 732 aa24.37■■□□□ 1.49
COL7A1-209ENST00000474432 KRT24Q2M2I5 525 aa24.37■■□□□ 1.49
COL7A1-209ENST00000474432 PROSER3Q2NL68 480 aa24.37■■□□□ 1.49
COL7A1-209ENST00000474432 C7orf43Q8WVR3 580 aa24.37■■□□□ 1.49
COL7A1-209ENST00000474432 CNKSR1Q969H4 720 aa24.37■■□□□ 1.49
COL7A1-209ENST00000474432 ZNF219Q9P2Y4 722 aaPredicted RBP24.37■■□□□ 1.49
COL7A1-209ENST00000474432 TIAM2Q8IVF5 1701 aa24.37■■□□□ 1.49
COL7A1-209ENST00000474432 DICER1Q9UPY3 1922 aaKnown RBP24.36■■□□□ 1.49
COL7A1-209ENST00000474432 PRPF40BQ6NWY9 871 aaKnown RBP24.36■■□□□ 1.49
COL7A1-209ENST00000474432 ZBTB3Q9H5J0 574 aa24.36■■□□□ 1.49
COL7A1-209ENST00000474432 UBN2Q6ZU65 1347 aa24.35■■□□□ 1.49
COL7A1-209ENST00000474432 ABCC12Q96J65 1359 aa24.35■■□□□ 1.49
COL7A1-209ENST00000474432 ANXA1P04083 346 aa24.35■■□□□ 1.49
COL7A1-209ENST00000474432 EIF2S2P20042 333 aaKnown RBP24.35■■□□□ 1.49
COL7A1-209ENST00000474432 ZNF34Q8IZ26 560 aa24.35■■□□□ 1.49
COL7A1-209ENST00000474432 ZC3H4Q9UPT8 1303 aaKnown RBP24.35■■□□□ 1.49
COL7A1-209ENST00000474432 KIF6Q6ZMV9 814 aa24.34■■□□□ 1.49
COL7A1-209ENST00000474432 CEP350Q5VT06 3117 aa24.33■■□□□ 1.49
COL7A1-209ENST00000474432 TOMM70O94826 608 aa24.33■■□□□ 1.49
COL7A1-209ENST00000474432 NPR1P16066 1061 aa24.33■■□□□ 1.49
COL7A1-209ENST00000474432 HSPA6P17066 643 aa24.33■■□□□ 1.49
COL7A1-209ENST00000474432 CCDC184Q52MB2 194 aa24.33■■□□□ 1.49
COL7A1-209ENST00000474432 GIGYF2Q6Y7W6 1299 aaKnown RBP24.33■■□□□ 1.49
COL7A1-209ENST00000474432 KDM2BQ8NHM5 1336 aa24.33■■□□□ 1.48
COL7A1-209ENST00000474432 LTBP3Q9NS15 1303 aa24.33■■□□□ 1.48
COL7A1-209ENST00000474432 GPTP24298 496 aa24.32■■□□□ 1.48
COL7A1-209ENST00000474432 SUSD4Q5VX71 490 aa24.32■■□□□ 1.48
COL7A1-209ENST00000474432 NUTM1Q86Y26 1132 aa24.32■■□□□ 1.48
COL7A1-209ENST00000474432 IBTKQ9P2D0 1353 aaPredicted RBP24.31■■□□□ 1.48
COL7A1-209ENST00000474432 ERFEQ4G0M1 354 aa24.31■■□□□ 1.48
COL7A1-209ENST00000474432 RRAGCQ9HB90 399 aa24.31■■□□□ 1.48
COL7A1-209ENST00000474432 CRY2Q49AN0 593 aa24.3■■□□□ 1.48
COL7A1-209ENST00000474432 NECTIN2Q92692 538 aa24.3■■□□□ 1.48
COL7A1-209ENST00000474432 RIC1Q4ADV7 1423 aa24.29■■□□□ 1.48
COL7A1-209ENST00000474432 GLTPD2A6NH11 291 aa24.29■■□□□ 1.48
COL7A1-209ENST00000474432 APAF1O14727 1248 aa24.29■■□□□ 1.48
COL7A1-209ENST00000474432 NTSR2O95665 410 aa24.29■■□□□ 1.48
COL7A1-209ENST00000474432 ZNF853P0CG23 659 aa24.29■■□□□ 1.48
COL7A1-209ENST00000474432 ZEB1P37275 1124 aaPredicted RBP24.29■■□□□ 1.48
COL7A1-209ENST00000474432 NYXQ9GZU5 481 aa24.29■■□□□ 1.48
COL7A1-209ENST00000474432 LAS1LQ9Y4W2 734 aaKnown RBP24.29■■□□□ 1.48
COL7A1-209ENST00000474432 OLFM4Q6UX06 510 aa24.28■■□□□ 1.48
COL7A1-209ENST00000474432 CFAP44Q96MT7 982 aa24.28■■□□□ 1.48
COL7A1-209ENST00000474432 ANKRD36CQ5JPF3 1778 aa24.28■■□□□ 1.48
COL7A1-209ENST00000474432 SNED1Q8TER0 1413 aa24.27■■□□□ 1.48
COL7A1-209ENST00000474432 GTF2E1P29083 439 aaPredicted RBP24.27■■□□□ 1.48
COL7A1-209ENST00000474432 COPS6Q7L5N1 327 aa24.27■■□□□ 1.48
COL7A1-209ENST00000474432 TAOK3Q9H2K8 898 aa24.27■■□□□ 1.48
COL7A1-209ENST00000474432 DDX21Q9NR30 783 aaKnown RBP eCLIP24.27■■□□□ 1.48
COL7A1-209ENST00000474432 RBM46Q8TBY0 533 aaKnown RBP24.26■■□□□ 1.47
COL7A1-209ENST00000474432 XAGE3Q8WTP9 111 aa24.26■■□□□ 1.47
COL7A1-209ENST00000474432 POTECB2RU33 542 aa24.25■■□□□ 1.47
COL7A1-209ENST00000474432 SOGA3Q5TF21 947 aa24.25■■□□□ 1.47
COL7A1-209ENST00000474432 C3orf67Q6ZVT6 689 aa24.25■■□□□ 1.47
COL7A1-209ENST00000474432 MBIPQ9NS73 344 aa24.25■■□□□ 1.47
COL7A1-209ENST00000474432 WDR90Q96KV7 1748 aa24.24■■□□□ 1.47
COL7A1-209ENST00000474432 HOXA10P31260 410 aaPredicted RBP24.24■■□□□ 1.47
COL7A1-209ENST00000474432 CHPF2Q9P2E5 772 aa24.24■■□□□ 1.47
COL7A1-209ENST00000474432 HOXB7P09629 217 aa24.23■■□□□ 1.47
COL7A1-209ENST00000474432 PARP10Q53GL7 1025 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms