RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 NCBP3Q53F19 620 aaKnown RBP24.64■■□□□ 1.54
PTCD3-210ENST00000473829 A0A0G2JLW4 131 aa24.63■■□□□ 1.53
PTCD3-210ENST00000473829 TGFB2P61812 414 aa24.63■■□□□ 1.53
PTCD3-210ENST00000473829 DUSP27Q5VZP5 1158 aa24.63■■□□□ 1.53
PTCD3-210ENST00000473829 HOXB7P09629 217 aa24.62■■□□□ 1.53
PTCD3-210ENST00000473829 DPEP1P16444 411 aa24.62■■□□□ 1.53
PTCD3-210ENST00000473829 CLEC4GQ6UXB4 293 aa24.62■■□□□ 1.53
PTCD3-210ENST00000473829 TSR2Q969E8 191 aaKnown RBP24.62■■□□□ 1.53
PTCD3-210ENST00000473829 DLEC1Q9Y238 1755 aa24.62■■□□□ 1.53
PTCD3-210ENST00000473829 MAP3K15Q6ZN16 1313 aa24.61■■□□□ 1.53
PTCD3-210ENST00000473829 ZNF652Q9Y2D9 606 aa24.61■■□□□ 1.53
PTCD3-210ENST00000473829 RGL2O15211 777 aa24.6■■□□□ 1.53
PTCD3-210ENST00000473829 KCNA3P22001 575 aa24.6■■□□□ 1.53
PTCD3-210ENST00000473829 HDGFL1Q5TGJ6 251 aa24.6■■□□□ 1.53
PTCD3-210ENST00000473829 C8orf58Q8NAV2 365 aa24.6■■□□□ 1.53
PTCD3-210ENST00000473829 SETDB2Q96T68 719 aa24.6■■□□□ 1.53
PTCD3-210ENST00000473829 ZBTB3Q9H5J0 574 aa24.6■■□□□ 1.53
PTCD3-210ENST00000473829 CHPF2Q9P2E5 772 aa24.6■■□□□ 1.53
PTCD3-210ENST00000473829 COL11A2P13942 1736 aaPredicted RBP24.6■■□□□ 1.53
PTCD3-210ENST00000473829 CHD4Q14839 1912 aa24.59■■□□□ 1.53
PTCD3-210ENST00000473829 CCER2I3L3R5 266 aa24.59■■□□□ 1.53
PTCD3-210ENST00000473829 PRR5LQ6MZQ0 368 aa24.59■■□□□ 1.53
PTCD3-210ENST00000473829 KIF6Q6ZMV9 814 aa24.59■■□□□ 1.53
PTCD3-210ENST00000473829 CCDC24Q8N4L8 307 aa24.59■■□□□ 1.53
PTCD3-210ENST00000473829 IL16Q14005 1332 aa24.59■■□□□ 1.53
PTCD3-210ENST00000473829 ERVV-1B6SEH8 477 aa24.58■■□□□ 1.53
PTCD3-210ENST00000473829 ELL2O00472 640 aaPredicted RBP24.58■■□□□ 1.53
PTCD3-210ENST00000473829 CHRNA5P30532 468 aa24.58■■□□□ 1.53
PTCD3-210ENST00000473829 DDX21Q9NR30 783 aaKnown RBP eCLIP24.58■■□□□ 1.53
PTCD3-210ENST00000473829 DIEXFQ68CQ4 756 aaKnown RBP24.57■■□□□ 1.52
PTCD3-210ENST00000473829 NIP7Q9Y221 180 aaKnown RBP eCLIP24.57■■□□□ 1.52
PTCD3-210ENST00000473829 ATP10DQ9P241 1426 aa24.57■■□□□ 1.52
PTCD3-210ENST00000473829 ANKRD36CQ5JPF3 1778 aa24.57■■□□□ 1.52
PTCD3-210ENST00000473829 TSPYL6Q8N831 410 aa24.56■■□□□ 1.52
PTCD3-210ENST00000473829 COPS6Q7L5N1 327 aa24.55■■□□□ 1.52
PTCD3-210ENST00000473829 CNBD1Q8NA66 436 aa24.55■■□□□ 1.52
PTCD3-210ENST00000473829 XAGE3Q8WTP9 111 aa24.55■■□□□ 1.52
PTCD3-210ENST00000473829 ARFGEF1Q9Y6D6 1849 aa24.55■■□□□ 1.52
PTCD3-210ENST00000473829 WDR63Q8IWG1 891 aa24.54■■□□□ 1.52
PTCD3-210ENST00000473829 SPINK5Q9NQ38 1064 aaPredicted RBP24.54■■□□□ 1.52
PTCD3-210ENST00000473829 FANCIQ9NVI1 1328 aa24.54■■□□□ 1.52
PTCD3-210ENST00000473829 AIMP1Q12904 312 aaKnown RBP24.53■■□□□ 1.52
PTCD3-210ENST00000473829 GIGYF2Q6Y7W6 1299 aaKnown RBP24.53■■□□□ 1.52
PTCD3-210ENST00000473829 NBPF5PQ86XG9 351 aaPredicted RBP24.53■■□□□ 1.52
PTCD3-210ENST00000473829 DBF4Q9UBU7 674 aaPredicted RBP24.53■■□□□ 1.52
PTCD3-210ENST00000473829 UBN2Q6ZU65 1347 aa24.53■■□□□ 1.52
PTCD3-210ENST00000473829 FAM177BA6PVY3 158 aa24.52■■□□□ 1.52
PTCD3-210ENST00000473829 GRIN3BO60391 1043 aa24.52■■□□□ 1.52
PTCD3-210ENST00000473829 BCS1LQ9Y276 419 aa24.52■■□□□ 1.52
PTCD3-210ENST00000473829 TNRC6CQ9HCJ0 1690 aaKnown RBP24.52■■□□□ 1.52
PTCD3-210ENST00000473829 GPTP24298 496 aa24.51■■□□□ 1.51
PTCD3-210ENST00000473829 MIER1Q8N108 512 aa24.51■■□□□ 1.51
PTCD3-210ENST00000473829 ZNF521Q96K83 1311 aa24.51■■□□□ 1.51
PTCD3-210ENST00000473829 ARFGEF2Q9Y6D5 1785 aa24.51■■□□□ 1.51
PTCD3-210ENST00000473829 YY1P25490 414 aa24.5■■□□□ 1.51
PTCD3-210ENST00000473829 C2CD5Q86YS7 1000 aa24.5■■□□□ 1.51
PTCD3-210ENST00000473829 ZNF34Q8IZ26 560 aa24.5■■□□□ 1.51
PTCD3-210ENST00000473829 BRIP1Q9BX63 1249 aa24.5■■□□□ 1.51
PTCD3-210ENST00000473829 PIM2Q9P1W9 311 aa24.5■■□□□ 1.51
PTCD3-210ENST00000473829 NPHP1O15259 732 aa24.49■■□□□ 1.51
PTCD3-210ENST00000473829 ST5P78524 1137 aa24.49■■□□□ 1.51
PTCD3-210ENST00000473829 ABCC12Q96J65 1359 aa24.48■■□□□ 1.51
PTCD3-210ENST00000473829 CACNA1SQ13698 1873 aa24.47■■□□□ 1.51
PTCD3-210ENST00000473829 TWISTNBQ3B726 338 aaPredicted RBP24.47■■□□□ 1.51
PTCD3-210ENST00000473829 SUSD4Q5VX71 490 aa24.47■■□□□ 1.51
PTCD3-210ENST00000473829 PHAXQ9H814 394 aaKnown RBP24.47■■□□□ 1.51
PTCD3-210ENST00000473829 HYPKQ9NX55 129 aa24.47■■□□□ 1.51
PTCD3-210ENST00000473829 IBTKQ9P2D0 1353 aaPredicted RBP24.46■■□□□ 1.51
PTCD3-210ENST00000473829 PDE6BP35913 854 aa24.46■■□□□ 1.51
PTCD3-210ENST00000473829 DALRD3Q5D0E6 543 aaKnown RBP24.46■■□□□ 1.51
PTCD3-210ENST00000473829 TPTE2Q6XPS3 522 aa24.46■■□□□ 1.51
PTCD3-210ENST00000473829 H0YIN7 160 aa24.45■■□□□ 1.5
PTCD3-210ENST00000473829 NUTM1Q86Y26 1132 aa24.45■■□□□ 1.5
PTCD3-210ENST00000473829 PLBD2Q8NHP8 589 aa24.45■■□□□ 1.5
PTCD3-210ENST00000473829 TCERG1O14776 1098 aaKnown RBP24.44■■□□□ 1.5
PTCD3-210ENST00000473829 NTSR2O95665 410 aa24.44■■□□□ 1.5
PTCD3-210ENST00000473829 EXOSC9Q06265 439 aaKnown RBP24.44■■□□□ 1.5
PTCD3-210ENST00000473829 CCDC30Q5VVM6 783 aa24.44■■□□□ 1.5
PTCD3-210ENST00000473829 ERFEQ4G0M1 354 aa24.43■■□□□ 1.5
PTCD3-210ENST00000473829 ANKRD13DQ6ZTN6 518 aa24.43■■□□□ 1.5
PTCD3-210ENST00000473829 SRGNP10124 158 aa24.42■■□□□ 1.5
PTCD3-210ENST00000473829 GOLGA2Q08379 1002 aa24.42■■□□□ 1.5
PTCD3-210ENST00000473829 TCIRG1Q13488 830 aa24.42■■□□□ 1.5
PTCD3-210ENST00000473829 PARP10Q53GL7 1025 aa24.42■■□□□ 1.5
PTCD3-210ENST00000473829 NYXQ9GZU5 481 aa24.42■■□□□ 1.5
PTCD3-210ENST00000473829 SLX4Q8IY92 1834 aa24.41■■□□□ 1.5
PTCD3-210ENST00000473829 HSP90AB3PQ58FF7 597 aa24.41■■□□□ 1.5
PTCD3-210ENST00000473829 TTLL6Q8N841 843 aa24.41■■□□□ 1.5
PTCD3-210ENST00000473829 ZNF622Q969S3 477 aaKnown RBP eCLIP24.41■■□□□ 1.5
PTCD3-210ENST00000473829 PDZRN3Q9UPQ7 1066 aa24.41■■□□□ 1.5
PTCD3-210ENST00000473829 RIC1Q4ADV7 1423 aa24.41■■□□□ 1.5
PTCD3-210ENST00000473829 KLRG2A4D1S0 409 aaPredicted RBP24.4■■□□□ 1.5
PTCD3-210ENST00000473829 GTF2E1P29083 439 aaPredicted RBP24.4■■□□□ 1.5
PTCD3-210ENST00000473829 NLRP10Q86W26 655 aa24.4■■□□□ 1.5
PTCD3-210ENST00000473829 MYH16Q9H6N6 1097 aa24.4■■□□□ 1.5
PTCD3-210ENST00000473829 VAMP4O75379 141 aa24.39■■□□□ 1.49
PTCD3-210ENST00000473829 ARHGAP27Q6ZUM4 889 aa24.39■■□□□ 1.49
PTCD3-210ENST00000473829 ZNF428Q96B54 188 aa24.39■■□□□ 1.49
PTCD3-210ENST00000473829 LAMB2P55268 1798 aa24.39■■□□□ 1.49
PTCD3-210ENST00000473829 STYK1Q6J9G0 422 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms