RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 LYPD4Q6UWN0 246 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 LARGE2Q8N3Y3 721 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 SVOPQ8N4V2 548 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 ABHD17AQ96GS6 310 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 GMCL1Q96IK5 515 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 MBIPQ9NS73 344 aa7.63□□□□□ -1.19
VPS13A-210ENST00000471439 PPRC1Q5VV67 1664 aaKnown RBP7.63□□□□□ -1.19
VPS13A-210ENST00000471439 IGF1RP08069 1367 aa7.62□□□□□ -1.19
VPS13A-210ENST00000471439 CSB-PGBD3P0DP91 1061 aa7.62□□□□□ -1.19
VPS13A-210ENST00000471439 PTK7Q13308 1070 aa7.62□□□□□ -1.19
VPS13A-210ENST00000471439 PGBD3Q8N328 593 aa7.62□□□□□ -1.19
VPS13A-210ENST00000471439 L3MBTL2Q969R5 705 aa7.62□□□□□ -1.19
VPS13A-210ENST00000471439 CRISPLD1Q9H336 500 aa7.62□□□□□ -1.19
VPS13A-210ENST00000471439 TOPBP1Q92547 1522 aa7.62□□□□□ -1.19
VPS13A-210ENST00000471439 PTPRMP28827 1452 aa7.62□□□□□ -1.19
VPS13A-210ENST00000471439 C21orf2O43822 256 aa7.61□□□□□ -1.19
VPS13A-210ENST00000471439 DPYDQ12882 1025 aa7.61□□□□□ -1.19
VPS13A-210ENST00000471439 TRERF1Q96PN7 1200 aa7.61□□□□□ -1.19
VPS13A-210ENST00000471439 A0A1W2PNR3 127 aa7.6□□□□□ -1.19
VPS13A-210ENST00000471439 DCDC2BA2VCK2 349 aa7.6□□□□□ -1.19
VPS13A-210ENST00000471439 EML1O00423 815 aa7.6□□□□□ -1.19
VPS13A-210ENST00000471439 BNIP3LO60238 219 aa7.6□□□□□ -1.19
VPS13A-210ENST00000471439 MX2P20592 715 aa7.6□□□□□ -1.19
VPS13A-210ENST00000471439 NOS2P35228 1153 aa7.6□□□□□ -1.19
VPS13A-210ENST00000471439 SRSF11Q05519 484 aaKnown RBP7.6□□□□□ -1.19
VPS13A-210ENST00000471439 NBPF1Q3BBV0 1214 aa7.6□□□□□ -1.19
VPS13A-210ENST00000471439 ARSJQ5FYB0 599 aaPredicted RBP7.6□□□□□ -1.19
VPS13A-210ENST00000471439 EFHC2Q5JST6 749 aa7.6□□□□□ -1.19
VPS13A-210ENST00000471439 FOXR1Q6PIV2 292 aa7.6□□□□□ -1.19
VPS13A-210ENST00000471439 ARXQ96QS3 562 aa7.6□□□□□ -1.19
VPS13A-210ENST00000471439 ZIC5Q96T25 663 aa7.6□□□□□ -1.19
VPS13A-210ENST00000471439 NDFIP2Q9NV92 336 aa7.6□□□□□ -1.19
VPS13A-210ENST00000471439 MROH2BQ7Z745 1585 aa7.59□□□□□ -1.19
VPS13A-210ENST00000471439 TEAD4Q15561 434 aa7.59□□□□□ -1.19
VPS13A-210ENST00000471439 ZCCHC2Q9C0B9 1178 aaKnown RBP7.59□□□□□ -1.19
VPS13A-210ENST00000471439 ZNF232Q9UNY5 417 aa7.59□□□□□ -1.19
VPS13A-210ENST00000471439 CEP170Q5SW79 1584 aa7.59□□□□□ -1.2
VPS13A-210ENST00000471439 FAM196BA6NMK8 535 aa7.58□□□□□ -1.2
VPS13A-210ENST00000471439 C2CD2LO14523 706 aa7.58□□□□□ -1.2
VPS13A-210ENST00000471439 CELA2BP08218 269 aaPredicted RBP7.58□□□□□ -1.2
VPS13A-210ENST00000471439 SEC13P55735 322 aa7.58□□□□□ -1.2
VPS13A-210ENST00000471439 LARP1Q6PKG0 1096 aaKnown RBP7.58□□□□□ -1.2
VPS13A-210ENST00000471439 ACDQ96AP0 544 aa7.58□□□□□ -1.2
VPS13A-210ENST00000471439 VRTNQ9H8Y1 702 aa7.58□□□□□ -1.2
VPS13A-210ENST00000471439 ZDHHC3Q9NYG2 299 aa7.58□□□□□ -1.2
VPS13A-210ENST00000471439 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.57□□□□□ -1.2
VPS13A-210ENST00000471439 SERTM1A2A2V5 107 aa7.57□□□□□ -1.2
VPS13A-210ENST00000471439 M0R2N6 131 aa7.57□□□□□ -1.2
VPS13A-210ENST00000471439 ARHGEF15O94989 841 aa7.57□□□□□ -1.2
VPS13A-210ENST00000471439 TATP17735 454 aaPredicted RBP7.57□□□□□ -1.2
VPS13A-210ENST00000471439 FGFR3P22607 806 aa7.57□□□□□ -1.2
VPS13A-210ENST00000471439 CTBSQ01459 385 aa7.57□□□□□ -1.2
VPS13A-210ENST00000471439 LBRQ14739 615 aaKnown RBP7.57□□□□□ -1.2
VPS13A-210ENST00000471439 BICDL1Q6ZP65 573 aa7.57□□□□□ -1.2
VPS13A-210ENST00000471439 ANKMY2Q8IV38 441 aa7.57□□□□□ -1.2
VPS13A-210ENST00000471439 C1orf216Q8TAB5 229 aa7.57□□□□□ -1.2
VPS13A-210ENST00000471439 SCG3Q8WXD2 468 aaKnown RBP7.57□□□□□ -1.2
VPS13A-210ENST00000471439 HSH2DQ96JZ2 352 aa7.57□□□□□ -1.2
VPS13A-210ENST00000471439 HCN4Q9Y3Q4 1203 aa7.57□□□□□ -1.2
VPS13A-210ENST00000471439 TDRD9Q8NDG6 1382 aaKnown RBP7.57□□□□□ -1.2
VPS13A-210ENST00000471439 PPP1R12BO60237 982 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-210ENST00000471439 PSMA6P60900 246 aaKnown RBP7.56□□□□□ -1.2
VPS13A-210ENST00000471439 GRIN2CQ14957 1233 aa7.56□□□□□ -1.2
VPS13A-210ENST00000471439 C1orf229Q6ZS94 237 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-210ENST00000471439 C7orf43Q8WVR3 580 aa7.56□□□□□ -1.2
VPS13A-210ENST00000471439 CFHR5Q9BXR6 569 aa7.56□□□□□ -1.2
VPS13A-210ENST00000471439 STRN4Q9NRL3 753 aa7.56□□□□□ -1.2
VPS13A-210ENST00000471439 ATXN7L1Q9ULK2 861 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-210ENST00000471439 ADAMTS8Q9UP79 889 aa7.56□□□□□ -1.2
VPS13A-210ENST00000471439 MAGI1Q96QZ7 1491 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-210ENST00000471439 KHNYNO15037 678 aaKnown RBP7.55□□□□□ -1.2
VPS13A-210ENST00000471439 ATXN7O15265 892 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-210ENST00000471439 CD33P20138 364 aa7.55□□□□□ -1.2
VPS13A-210ENST00000471439 LRRC69Q6ZNQ3 347 aa7.55□□□□□ -1.2
VPS13A-210ENST00000471439 HINFPQ9BQA5 517 aa7.55□□□□□ -1.2
VPS13A-210ENST00000471439 PHACTR1Q9C0D0 580 aa7.55□□□□□ -1.2
VPS13A-210ENST00000471439 ZMIZ1Q9ULJ6 1067 aa7.55□□□□□ -1.2
VPS13A-210ENST00000471439 RBM19Q9Y4C8 960 aaKnown RBP7.55□□□□□ -1.2
VPS13A-210ENST00000471439 KIF21BO75037 1637 aa7.55□□□□□ -1.2
VPS13A-210ENST00000471439 MAPTP10636 758 aaKnown RBP7.54□□□□□ -1.2
VPS13A-210ENST00000471439 POTEAQ6S8J7 498 aa7.54□□□□□ -1.2
VPS13A-210ENST00000471439 NLRP8Q86W28 1048 aa7.54□□□□□ -1.2
VPS13A-210ENST00000471439 RHPN1Q8TCX5 695 aa7.54□□□□□ -1.2
VPS13A-210ENST00000471439 STK32AQ8WU08 396 aa7.54□□□□□ -1.2
VPS13A-210ENST00000471439 NGLY1Q96IV0 654 aa7.54□□□□□ -1.2
VPS13A-210ENST00000471439 PCDHGC4Q9Y5F7 938 aa7.54□□□□□ -1.2
VPS13A-210ENST00000471439 ATAD2Q6PL18 1390 aa7.54□□□□□ -1.2
VPS13A-210ENST00000471439 TNP2Q05952 138 aa7.53□□□□□ -1.2
VPS13A-210ENST00000471439 ZNF280CQ8ND82 737 aa7.53□□□□□ -1.2
VPS13A-210ENST00000471439 ARID3AQ99856 593 aa7.53□□□□□ -1.2
VPS13A-210ENST00000471439 C2orf49Q9BVC5 232 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-210ENST00000471439 NOVA2Q9UNW9 492 aaKnown RBP7.53□□□□□ -1.2
VPS13A-210ENST00000471439 PHF24Q9UPV7 400 aa7.53□□□□□ -1.2
VPS13A-210ENST00000471439 ADAMTSL3P82987 1691 aa7.53□□□□□ -1.2
VPS13A-210ENST00000471439 SHISA8B8ZZ34 492 aa7.52□□□□□ -1.21
VPS13A-210ENST00000471439 BMP4P12644 408 aa7.52□□□□□ -1.21
VPS13A-210ENST00000471439 GSK3AP49840 483 aa7.52□□□□□ -1.21
VPS13A-210ENST00000471439 HIRAP54198 1017 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-210ENST00000471439 SRPK2P78362 688 aaKnown RBP7.52□□□□□ -1.21
VPS13A-210ENST00000471439 FIGNL1Q6PIW4 674 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms