RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 GDF2Q9UK05 429 aaPredicted RBP11.45□□□□□ -0.58
CCDC39-202ENST00000471307 ADAMTS8Q9UP79 889 aa11.45□□□□□ -0.58
CCDC39-202ENST00000471307 MAPTP10636 758 aaKnown RBP11.44□□□□□ -0.58
CCDC39-202ENST00000471307 BMP4P12644 408 aa11.44□□□□□ -0.58
CCDC39-202ENST00000471307 NEUROD4Q9HD90 331 aa11.44□□□□□ -0.58
CCDC39-202ENST00000471307 ANKIB1Q9P2G1 1089 aa11.44□□□□□ -0.58
CCDC39-202ENST00000471307 HIF1AQ16665 826 aa11.43□□□□□ -0.58
CCDC39-202ENST00000471307 KLRG1Q96E93 195 aa11.43□□□□□ -0.58
CCDC39-202ENST00000471307 PHACTR1Q9C0D0 580 aa11.43□□□□□ -0.58
CCDC39-202ENST00000471307 RNF225M0QZC1 329 aaPredicted RBP11.42□□□□□ -0.58
CCDC39-202ENST00000471307 KHNYNO15037 678 aaKnown RBP11.42□□□□□ -0.58
CCDC39-202ENST00000471307 EFSO43281 561 aa11.42□□□□□ -0.58
CCDC39-202ENST00000471307 SRPK2P78362 688 aaKnown RBP11.42□□□□□ -0.58
CCDC39-202ENST00000471307 GOLGA6L1Q8N7Z2 621 aa11.42□□□□□ -0.58
CCDC39-202ENST00000471307 NOVA2Q9UNW9 492 aaKnown RBP11.42□□□□□ -0.58
CCDC39-202ENST00000471307 HCN4Q9Y3Q4 1203 aa11.42□□□□□ -0.58
CCDC39-202ENST00000471307 DCDC2BA2VCK2 349 aa11.41□□□□□ -0.58
CCDC39-202ENST00000471307 OIP5O43482 229 aa11.41□□□□□ -0.58
CCDC39-202ENST00000471307 CTBSQ01459 385 aa11.41□□□□□ -0.58
CCDC39-202ENST00000471307 LRRC69Q6ZNQ3 347 aa11.41□□□□□ -0.58
CCDC39-202ENST00000471307 ALDH16A1Q8IZ83 802 aa11.41□□□□□ -0.58
CCDC39-202ENST00000471307 AVENQ9NQS1 362 aaPredicted RBP11.41□□□□□ -0.58
CCDC39-202ENST00000471307 FOXO3O43524 673 aa11.4□□□□□ -0.58
CCDC39-202ENST00000471307 ARAFP10398 606 aa11.4□□□□□ -0.58
CCDC39-202ENST00000471307 WEE1P30291 646 aa11.4□□□□□ -0.58
CCDC39-202ENST00000471307 SWI5Q1ZZU3 235 aa11.4□□□□□ -0.58
CCDC39-202ENST00000471307 C2CD2LO14523 706 aa11.39□□□□□ -0.59
CCDC39-202ENST00000471307 ATG7O95352 703 aa11.39□□□□□ -0.59
CCDC39-202ENST00000471307 CDCA8Q53HL2 280 aa11.39□□□□□ -0.59
CCDC39-202ENST00000471307 ERICH6Q7L0X2 663 aa11.39□□□□□ -0.59
CCDC39-202ENST00000471307 C14orf37Q86TY3 774 aa11.39□□□□□ -0.59
CCDC39-202ENST00000471307 CHMP7Q8WUX9 453 aaPredicted RBP11.39□□□□□ -0.59
CCDC39-202ENST00000471307 PBXIP1Q96AQ6 731 aa11.39□□□□□ -0.59
CCDC39-202ENST00000471307 ACIN1Q9UKV3 1341 aaKnown RBP11.38□□□□□ -0.59
CCDC39-202ENST00000471307 MARK1Q9P0L2 795 aa11.38□□□□□ -0.59
CCDC39-202ENST00000471307 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.37□□□□□ -0.59
CCDC39-202ENST00000471307 CD33P20138 364 aa11.37□□□□□ -0.59
CCDC39-202ENST00000471307 MARSP56192 900 aaKnown RBP11.37□□□□□ -0.59
CCDC39-202ENST00000471307 RTN1Q16799 776 aa11.37□□□□□ -0.59
CCDC39-202ENST00000471307 SLCO4C1Q6ZQN7 724 aa11.37□□□□□ -0.59
CCDC39-202ENST00000471307 SCARF2Q96GP6 870 aaPredicted RBP11.37□□□□□ -0.59
CCDC39-202ENST00000471307 ARID3CA6NKF2 412 aa11.36□□□□□ -0.59
CCDC39-202ENST00000471307 KCNMA1Q12791 1236 aa11.36□□□□□ -0.59
CCDC39-202ENST00000471307 SUSD3Q96L08 255 aa11.36□□□□□ -0.59
CCDC39-202ENST00000471307 HCN2Q9UL51 889 aa11.36□□□□□ -0.59
CCDC39-202ENST00000471307 ZMIZ1Q9ULJ6 1067 aa11.36□□□□□ -0.59
CCDC39-202ENST00000471307 NEDD1Q8NHV4 660 aa11.35□□□□□ -0.59
CCDC39-202ENST00000471307 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.35□□□□□ -0.59
CCDC39-202ENST00000471307 GGA1Q9UJY5 639 aa11.35□□□□□ -0.59
CCDC39-202ENST00000471307 ADH6P28332 368 aa11.34□□□□□ -0.59
CCDC39-202ENST00000471307 ZNF468Q5VIY5 522 aaPredicted RBP11.34□□□□□ -0.59
CCDC39-202ENST00000471307 IER5Q5VY09 327 aa11.34□□□□□ -0.59
CCDC39-202ENST00000471307 KCNQ4P56696 695 aa11.33□□□□□ -0.6
CCDC39-202ENST00000471307 GALNT6Q8NCL4 622 aa11.33□□□□□ -0.6
CCDC39-202ENST00000471307 EDARADDQ8WWZ3 215 aa11.33□□□□□ -0.6
CCDC39-202ENST00000471307 NGLY1Q96IV0 654 aa11.33□□□□□ -0.6
CCDC39-202ENST00000471307 HSH2DQ96JZ2 352 aa11.33□□□□□ -0.6
CCDC39-202ENST00000471307 LGR5O75473 907 aa11.32□□□□□ -0.6
CCDC39-202ENST00000471307 VTI1AQ96AJ9 217 aa11.32□□□□□ -0.6
CCDC39-202ENST00000471307 BRD7Q9NPI1 651 aa11.32□□□□□ -0.6
CCDC39-202ENST00000471307 STRN4Q9NRL3 753 aa11.32□□□□□ -0.6
CCDC39-202ENST00000471307 PRR12Q9ULL5 1215 aa11.32□□□□□ -0.6
CCDC39-202ENST00000471307 EPXP11678 715 aa11.31□□□□□ -0.6
CCDC39-202ENST00000471307 TYRO3Q06418 890 aa11.31□□□□□ -0.6
CCDC39-202ENST00000471307 FAM69CQ0P6D2 419 aa11.31□□□□□ -0.6
CCDC39-202ENST00000471307 PODNQ7Z5L7 613 aa11.31□□□□□ -0.6
CCDC39-202ENST00000471307 CEP63Q96MT8 703 aa11.31□□□□□ -0.6
CCDC39-202ENST00000471307 DNMT3AQ9Y6K1 912 aaPredicted RBP11.31□□□□□ -0.6
CCDC39-202ENST00000471307 TGFBR3LH3BV60 316 aa11.3□□□□□ -0.6
CCDC39-202ENST00000471307 C1orf229Q6ZS94 237 aaPredicted RBP11.3□□□□□ -0.6
CCDC39-202ENST00000471307 BTLAQ7Z6A9 289 aa11.3□□□□□ -0.6
CCDC39-202ENST00000471307 CCDC82Q8N4S0 544 aa11.3□□□□□ -0.6
CCDC39-202ENST00000471307 ZNF280CQ8ND82 737 aa11.3□□□□□ -0.6
CCDC39-202ENST00000471307 STK32AQ8WU08 396 aa11.3□□□□□ -0.6
CCDC39-202ENST00000471307 MYO19Q96H55 970 aa11.3□□□□□ -0.6
CCDC39-202ENST00000471307 NEURL1BA8MQ27 555 aa11.29□□□□□ -0.6
CCDC39-202ENST00000471307 PHF20L1A8MW92 1017 aa11.29□□□□□ -0.6
CCDC39-202ENST00000471307 KANK3Q6NY19 840 aa11.29□□□□□ -0.6
CCDC39-202ENST00000471307 BEND7Q8N7W2 519 aaPredicted RBP11.29□□□□□ -0.6
CCDC39-202ENST00000471307 SHISA8B8ZZ34 492 aa11.28□□□□□ -0.6
CCDC39-202ENST00000471307 SFSWAPQ12872 951 aaKnown RBP11.28□□□□□ -0.6
CCDC39-202ENST00000471307 NEUROD1Q13562 356 aa11.28□□□□□ -0.6
CCDC39-202ENST00000471307 KCNH4Q9UQ05 1017 aa11.28□□□□□ -0.6
CCDC39-202ENST00000471307 PPP1R15AO75807 674 aaPredicted RBP11.27□□□□□ -0.61
CCDC39-202ENST00000471307 GSK3AP49840 483 aa11.27□□□□□ -0.61
CCDC39-202ENST00000471307 OCLNQ16625 522 aa11.27□□□□□ -0.61
CCDC39-202ENST00000471307 COL26A1Q96A83 441 aa11.27□□□□□ -0.61
CCDC39-202ENST00000471307 QTRT2Q9H974 415 aaKnown RBP11.27□□□□□ -0.61
CCDC39-202ENST00000471307 EFCC1Q9HA90 598 aa11.27□□□□□ -0.61
CCDC39-202ENST00000471307 KLF15Q9UIH9 416 aa11.27□□□□□ -0.61
CCDC39-202ENST00000471307 TMEM164Q5U3C3 297 aa11.26□□□□□ -0.61
CCDC39-202ENST00000471307 FCHSD1Q86WN1 690 aa11.26□□□□□ -0.61
CCDC39-202ENST00000471307 CLP1Q92989 425 aaKnown RBP11.26□□□□□ -0.61
CCDC39-202ENST00000471307 SIN3BO75182 1162 aa11.25□□□□□ -0.61
CCDC39-202ENST00000471307 RASSF7Q02833 373 aa11.25□□□□□ -0.61
CCDC39-202ENST00000471307 SPEM2Q0P670 501 aa11.25□□□□□ -0.61
CCDC39-202ENST00000471307 FKBP5Q13451 457 aaPredicted RBP11.25□□□□□ -0.61
CCDC39-202ENST00000471307 DMGDHQ9UI17 866 aaKnown RBP11.25□□□□□ -0.61
CCDC39-202ENST00000471307 BCS1LQ9Y276 419 aa11.25□□□□□ -0.61
CCDC39-202ENST00000471307 PRMT3O60678 531 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms