RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 HLFQ16534 295 aa15.55■□□□□ 0.08
SHROOM3-202ENST00000466541 SETDB2Q96T68 719 aa15.55■□□□□ 0.08
SHROOM3-202ENST00000466541 ERBB4Q15303 1308 aa15.54■□□□□ 0.08
SHROOM3-202ENST00000466541 HOXB7P09629 217 aa15.54■□□□□ 0.08
SHROOM3-202ENST00000466541 EXOSC9Q06265 439 aaKnown RBP15.54■□□□□ 0.08
SHROOM3-202ENST00000466541 GOLGA2Q08379 1002 aa15.54■□□□□ 0.08
SHROOM3-202ENST00000466541 COPS6Q7L5N1 327 aa15.54■□□□□ 0.08
SHROOM3-202ENST00000466541 CCDC24Q8N4L8 307 aa15.54■□□□□ 0.08
SHROOM3-202ENST00000466541 XAGE3Q8WTP9 111 aa15.54■□□□□ 0.08
SHROOM3-202ENST00000466541 DDX21Q9NR30 783 aaKnown RBP eCLIP15.54■□□□□ 0.08
SHROOM3-202ENST00000466541 ZNF652Q9Y2D9 606 aa15.54■□□□□ 0.08
SHROOM3-202ENST00000466541 NUP98P52948 1817 aa15.54■□□□□ 0.08
SHROOM3-202ENST00000466541 AFDNP55196 1824 aaKnown RBP15.54■□□□□ 0.08
SHROOM3-202ENST00000466541 DCAF8L1A6NGE4 600 aa15.53■□□□□ 0.08
SHROOM3-202ENST00000466541 SERPINB2P05120 415 aa15.53■□□□□ 0.08
SHROOM3-202ENST00000466541 TWISTNBQ3B726 338 aaPredicted RBP15.53■□□□□ 0.08
SHROOM3-202ENST00000466541 MYH16Q9H6N6 1097 aa15.53■□□□□ 0.08
SHROOM3-202ENST00000466541 DBF4Q9UBU7 674 aaPredicted RBP15.53■□□□□ 0.08
SHROOM3-202ENST00000466541 NIP7Q9Y221 180 aaKnown RBP eCLIP15.53■□□□□ 0.08
SHROOM3-202ENST00000466541 CD2APQ9Y5K6 639 aa15.53■□□□□ 0.08
SHROOM3-202ENST00000466541 MAP3K15Q6ZN16 1313 aa15.52■□□□□ 0.08
SHROOM3-202ENST00000466541 GPTP24298 496 aa15.52■□□□□ 0.08
SHROOM3-202ENST00000466541 ZNF428Q96B54 188 aa15.52■□□□□ 0.08
SHROOM3-202ENST00000466541 N4BP2Q86UW6 1770 aaPredicted RBP15.52■□□□□ 0.07
SHROOM3-202ENST00000466541 HNRNPUQ00839 825 aaKnown RBP eCLIP15.51■□□□□ 0.07
SHROOM3-202ENST00000466541 GPR162Q16538 588 aa15.51■□□□□ 0.07
SHROOM3-202ENST00000466541 CCDC30Q5VVM6 783 aa15.51■□□□□ 0.07
SHROOM3-202ENST00000466541 ZNF521Q96K83 1311 aa15.5■□□□□ 0.07
SHROOM3-202ENST00000466541 A0A0G2JLW4 131 aa15.5■□□□□ 0.07
SHROOM3-202ENST00000466541 CLEC4GQ6UXB4 293 aa15.5■□□□□ 0.07
SHROOM3-202ENST00000466541 LRP10Q7Z4F1 713 aa15.5■□□□□ 0.07
SHROOM3-202ENST00000466541 NBPF5PQ86XG9 351 aaPredicted RBP15.5■□□□□ 0.07
SHROOM3-202ENST00000466541 CDCA7LQ96GN5 454 aa15.5■□□□□ 0.07
SHROOM3-202ENST00000466541 STK31Q9BXU1 1019 aa15.5■□□□□ 0.07
SHROOM3-202ENST00000466541 PHAXQ9H814 394 aaKnown RBP15.5■□□□□ 0.07
SHROOM3-202ENST00000466541 HYPKQ9NX55 129 aa15.5■□□□□ 0.07
SHROOM3-202ENST00000466541 CARMIL3Q8ND23 1372 aa15.49■□□□□ 0.07
SHROOM3-202ENST00000466541 ERVV-1B6SEH8 477 aa15.49■□□□□ 0.07
SHROOM3-202ENST00000466541 DPEP1P16444 411 aa15.48■□□□□ 0.07
SHROOM3-202ENST00000466541 GTF2E1P29083 439 aaPredicted RBP15.48■□□□□ 0.07
SHROOM3-202ENST00000466541 CNBD1Q8NA66 436 aa15.48■□□□□ 0.07
SHROOM3-202ENST00000466541 C10orf71Q711Q0 1435 aa15.48■□□□□ 0.07
SHROOM3-202ENST00000466541 E9PSI1 815 aa15.47■□□□□ 0.07
SHROOM3-202ENST00000466541 SLC4A2P04920 1241 aa15.47■□□□□ 0.07
SHROOM3-202ENST00000466541 CHRNA5P30532 468 aa15.47■□□□□ 0.07
SHROOM3-202ENST00000466541 PRR5LQ6MZQ0 368 aa15.47■□□□□ 0.07
SHROOM3-202ENST00000466541 GIGYF2Q6Y7W6 1299 aaKnown RBP15.47■□□□□ 0.07
SHROOM3-202ENST00000466541 ANKRD13DQ6ZTN6 518 aa15.47■□□□□ 0.07
SHROOM3-202ENST00000466541 CHMP4AQ9BY43 222 aa15.47■□□□□ 0.07
SHROOM3-202ENST00000466541 KIF13BQ9NQT8 1826 aa15.47■□□□□ 0.07
SHROOM3-202ENST00000466541 VAMP4O75379 141 aa15.46■□□□□ 0.07
SHROOM3-202ENST00000466541 ST5P78524 1137 aa15.46■□□□□ 0.07
SHROOM3-202ENST00000466541 SLFN5Q08AF3 891 aa15.46■□□□□ 0.07
SHROOM3-202ENST00000466541 RIC3Q7Z5B4 369 aa15.46■□□□□ 0.07
SHROOM3-202ENST00000466541 GOLGB1Q14789 3259 aaKnown RBP15.46■□□□□ 0.07
SHROOM3-202ENST00000466541 ATP5J2-PTCD1G3V325 749 aa15.45■□□□□ 0.06
SHROOM3-202ENST00000466541 TGFB2P61812 414 aa15.45■□□□□ 0.06
SHROOM3-202ENST00000466541 TPTE2Q6XPS3 522 aa15.45■□□□□ 0.06
SHROOM3-202ENST00000466541 G2E3Q7L622 706 aa15.45■□□□□ 0.06
SHROOM3-202ENST00000466541 NUTM1Q86Y26 1132 aa15.45■□□□□ 0.06
SHROOM3-202ENST00000466541 C2CD5Q86YS7 1000 aa15.45■□□□□ 0.06
SHROOM3-202ENST00000466541 PLBD2Q8NHP8 589 aa15.45■□□□□ 0.06
SHROOM3-202ENST00000466541 NRXN2Q9P2S2 1712 aa15.45■□□□□ 0.06
SHROOM3-202ENST00000466541 PXDNLA1KZ92 1463 aa15.45■□□□□ 0.06
SHROOM3-202ENST00000466541 SUSD4Q5VX71 490 aa15.44■□□□□ 0.06
SHROOM3-202ENST00000466541 ZNF34Q8IZ26 560 aa15.44■□□□□ 0.06
SHROOM3-202ENST00000466541 UBN2Q6ZU65 1347 aa15.43■□□□□ 0.06
SHROOM3-202ENST00000466541 YBX3P16989 372 aaKnown RBP eCLIP15.43■□□□□ 0.06
SHROOM3-202ENST00000466541 TCIRG1Q13488 830 aa15.43■□□□□ 0.06
SHROOM3-202ENST00000466541 HSP90AB3PQ58FF7 597 aa15.43■□□□□ 0.06
SHROOM3-202ENST00000466541 ZNF622Q969S3 477 aaKnown RBP eCLIP15.43■□□□□ 0.06
SHROOM3-202ENST00000466541 BCS1LQ9Y276 419 aa15.43■□□□□ 0.06
SHROOM3-202ENST00000466541 ANKRD36CQ5JPF3 1778 aa15.43■□□□□ 0.06
SHROOM3-202ENST00000466541 ARFGEF2Q9Y6D5 1785 aa15.43■□□□□ 0.06
SHROOM3-202ENST00000466541 ANKRD31Q8N7Z5 1873 aa15.43■□□□□ 0.06
SHROOM3-202ENST00000466541 KIAA1551Q9HCM1 1747 aa15.43■□□□□ 0.06
SHROOM3-202ENST00000466541 ATP10DQ9P241 1426 aa15.43■□□□□ 0.06
SHROOM3-202ENST00000466541 H0YIN7 160 aa15.42■□□□□ 0.06
SHROOM3-202ENST00000466541 RGL2O15211 777 aa15.42■□□□□ 0.06
SHROOM3-202ENST00000466541 DDX58O95786 925 aaKnown RBP15.42■□□□□ 0.06
SHROOM3-202ENST00000466541 ERFEQ4G0M1 354 aa15.42■□□□□ 0.06
SHROOM3-202ENST00000466541 PPP1R42Q7Z4L9 355 aa15.42■□□□□ 0.06
SHROOM3-202ENST00000466541 MYD88Q99836 296 aa15.42■□□□□ 0.06
SHROOM3-202ENST00000466541 BRIP1Q9BX63 1249 aa15.42■□□□□ 0.06
SHROOM3-202ENST00000466541 NYXQ9GZU5 481 aa15.42■□□□□ 0.06
SHROOM3-202ENST00000466541 KCNA3P22001 575 aa15.41■□□□□ 0.06
SHROOM3-202ENST00000466541 PDE6BP35913 854 aa15.41■□□□□ 0.06
SHROOM3-202ENST00000466541 FKBP5Q13451 457 aaPredicted RBP15.41■□□□□ 0.06
SHROOM3-202ENST00000466541 UTP14AQ9BVJ6 771 aaKnown RBP15.41■□□□□ 0.06
SHROOM3-202ENST00000466541 PIM2Q9P1W9 311 aa15.41■□□□□ 0.06
SHROOM3-202ENST00000466541 MAP3K2Q9Y2U5 619 aa15.41■□□□□ 0.06
SHROOM3-202ENST00000466541 CACNA1FO60840 1977 aa15.41■□□□□ 0.06
SHROOM3-202ENST00000466541 CACNA1SQ13698 1873 aa15.4■□□□□ 0.06
SHROOM3-202ENST00000466541 PI4KAP2A4QPH2 592 aa15.4■□□□□ 0.06
SHROOM3-202ENST00000466541 FLIIQ13045 1269 aa15.4■□□□□ 0.06
SHROOM3-202ENST00000466541 PARP10Q53GL7 1025 aa15.4■□□□□ 0.06
SHROOM3-202ENST00000466541 RTL5Q5HYW3 569 aaPredicted RBP15.4■□□□□ 0.06
SHROOM3-202ENST00000466541 NLRP10Q86W26 655 aa15.4■□□□□ 0.06
SHROOM3-202ENST00000466541 PI4KAP1Q8N8J0 262 aa15.4■□□□□ 0.06
SHROOM3-202ENST00000466541 ZNF219Q9P2Y4 722 aaPredicted RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms