RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 KRT24Q2M2I5 525 aa28.55■■■□□ 2.16
LIME1-203ENST00000465591 CNBD1Q8NA66 436 aa28.55■■■□□ 2.16
LIME1-203ENST00000465591 BRIP1Q9BX63 1249 aa28.55■■■□□ 2.16
LIME1-203ENST00000465591 ZNF652Q9Y2D9 606 aa28.55■■■□□ 2.16
LIME1-203ENST00000465591 SBF1O95248 1867 aa28.55■■■□□ 2.16
LIME1-203ENST00000465591 H0YIN7 160 aa28.53■■■□□ 2.16
LIME1-203ENST00000465591 APAF1O14727 1248 aa28.53■■■□□ 2.16
LIME1-203ENST00000465591 RGL2O15211 777 aa28.53■■■□□ 2.16
LIME1-203ENST00000465591 PDIA6Q15084 440 aa28.53■■■□□ 2.16
LIME1-203ENST00000465591 LRP10Q7Z4F1 713 aa28.53■■■□□ 2.16
LIME1-203ENST00000465591 NIP7Q9Y221 180 aaKnown RBP eCLIP28.53■■■□□ 2.16
LIME1-203ENST00000465591 LAS1LQ9Y4W2 734 aaKnown RBP28.53■■■□□ 2.16
LIME1-203ENST00000465591 EIF2S2P20042 333 aaKnown RBP28.52■■■□□ 2.16
LIME1-203ENST00000465591 ZNF526Q8TF50 670 aaPredicted RBP28.52■■■□□ 2.16
LIME1-203ENST00000465591 MAP3K15Q6ZN16 1313 aa28.51■■■□□ 2.15
LIME1-203ENST00000465591 PROSER3Q2NL68 480 aa28.51■■■□□ 2.15
LIME1-203ENST00000465591 NBPF5PQ86XG9 351 aaPredicted RBP28.51■■■□□ 2.15
LIME1-203ENST00000465591 TTLL6Q8N841 843 aa28.51■■■□□ 2.15
LIME1-203ENST00000465591 CACNA1SQ13698 1873 aa28.51■■■□□ 2.15
LIME1-203ENST00000465591 ERBB4Q15303 1308 aa28.5■■■□□ 2.15
LIME1-203ENST00000465591 ANXA1P04083 346 aa28.5■■■□□ 2.15
LIME1-203ENST00000465591 PDE6BP35913 854 aa28.5■■■□□ 2.15
LIME1-203ENST00000465591 FAM177BA6PVY3 158 aa28.49■■■□□ 2.15
LIME1-203ENST00000465591 ST5P78524 1137 aa28.49■■■□□ 2.15
LIME1-203ENST00000465591 ERVV-1B6SEH8 477 aa28.48■■■□□ 2.15
LIME1-203ENST00000465591 NPHP1O15259 732 aa28.48■■■□□ 2.15
LIME1-203ENST00000465591 C9orf131Q5VYM1 1079 aa28.48■■■□□ 2.15
LIME1-203ENST00000465591 NECTIN2Q92692 538 aa28.48■■■□□ 2.15
LIME1-203ENST00000465591 ZNF622Q969S3 477 aaKnown RBP eCLIP28.48■■■□□ 2.15
LIME1-203ENST00000465591 ZBTB3Q9H5J0 574 aa28.48■■■□□ 2.15
LIME1-203ENST00000465591 SLX4Q8IY92 1834 aa28.48■■■□□ 2.15
LIME1-203ENST00000465591 RASSF7Q02833 373 aa28.47■■■□□ 2.15
LIME1-203ENST00000465591 KIF6Q6ZMV9 814 aa28.47■■■□□ 2.15
LIME1-203ENST00000465591 GPBP1L1Q9HC44 474 aaPredicted RBP28.47■■■□□ 2.15
LIME1-203ENST00000465591 C1QTNF8P60827 252 aa28.46■■■□□ 2.15
LIME1-203ENST00000465591 CCDC88AQ3V6T2 1871 aa28.45■■■□□ 2.15
LIME1-203ENST00000465591 PRELPP51888 382 aa28.45■■■□□ 2.14
LIME1-203ENST00000465591 CFAP44Q96MT7 982 aa28.45■■■□□ 2.14
LIME1-203ENST00000465591 PDZRN3Q9UPQ7 1066 aa28.45■■■□□ 2.14
LIME1-203ENST00000465591 TNRC6CQ9HCJ0 1690 aaKnown RBP28.45■■■□□ 2.14
LIME1-203ENST00000465591 ARFGEF2Q9Y6D5 1785 aa28.45■■■□□ 2.14
LIME1-203ENST00000465591 SRGNP10124 158 aa28.44■■■□□ 2.14
LIME1-203ENST00000465591 UBN2Q6ZU65 1347 aa28.43■■■□□ 2.14
LIME1-203ENST00000465591 SENP3-EIF4A1A0A087X0R7 540 aa28.43■■■□□ 2.14
LIME1-203ENST00000465591 ZNF853P0CG23 659 aa28.43■■■□□ 2.14
LIME1-203ENST00000465591 TPTE2Q6XPS3 522 aa28.43■■■□□ 2.14
LIME1-203ENST00000465591 MBIPQ9NS73 344 aa28.43■■■□□ 2.14
LIME1-203ENST00000465591 ABCC12Q96J65 1359 aa28.42■■■□□ 2.14
LIME1-203ENST00000465591 GPTP24298 496 aa28.42■■■□□ 2.14
LIME1-203ENST00000465591 RNF181Q9P0P0 153 aa28.42■■■□□ 2.14
LIME1-203ENST00000465591 ZNF219Q9P2Y4 722 aaPredicted RBP28.42■■■□□ 2.14
LIME1-203ENST00000465591 FER1L6Q2WGJ9 1857 aa28.42■■■□□ 2.14
LIME1-203ENST00000465591 NFKBIEO00221 500 aa28.41■■■□□ 2.14
LIME1-203ENST00000465591 STYK1Q6J9G0 422 aa28.41■■■□□ 2.14
LIME1-203ENST00000465591 KLRG2A4D1S0 409 aaPredicted RBP28.4■■■□□ 2.14
LIME1-203ENST00000465591 ANP32CO43423 234 aa28.4■■■□□ 2.14
LIME1-203ENST00000465591 C21orf2O43822 256 aa28.4■■■□□ 2.14
LIME1-203ENST00000465591 GIGYF2Q6Y7W6 1299 aaKnown RBP28.4■■■□□ 2.14
LIME1-203ENST00000465591 NUTM1Q86Y26 1132 aa28.4■■■□□ 2.14
LIME1-203ENST00000465591 ZNF34Q8IZ26 560 aa28.4■■■□□ 2.14
LIME1-203ENST00000465591 MASTLQ96GX5 879 aa28.39■■■□□ 2.14
LIME1-203ENST00000465591 SUSD4Q5VX71 490 aa28.38■■■□□ 2.13
LIME1-203ENST00000465591 PRPF40BQ6NWY9 871 aaKnown RBP28.38■■■□□ 2.13
LIME1-203ENST00000465591 COPS6Q7L5N1 327 aa28.38■■■□□ 2.13
LIME1-203ENST00000465591 XAGE3Q8WTP9 111 aa28.38■■■□□ 2.13
LIME1-203ENST00000465591 MRS2Q9HD23 443 aa28.38■■■□□ 2.13
LIME1-203ENST00000465591 DDX21Q9NR30 783 aaKnown RBP eCLIP28.38■■■□□ 2.13
LIME1-203ENST00000465591 CHPF2Q9P2E5 772 aa28.38■■■□□ 2.13
LIME1-203ENST00000465591 ANKRD36CQ5JPF3 1778 aa28.37■■■□□ 2.13
LIME1-203ENST00000465591 AIMP1Q12904 312 aaKnown RBP28.37■■■□□ 2.13
LIME1-203ENST00000465591 ERFEQ4G0M1 354 aa28.37■■■□□ 2.13
LIME1-203ENST00000465591 CNKSR1Q969H4 720 aa28.37■■■□□ 2.13
LIME1-203ENST00000465591 IFT57Q9NWB7 429 aa28.37■■■□□ 2.13
LIME1-203ENST00000465591 KIF3CO14782 793 aa28.36■■■□□ 2.13
LIME1-203ENST00000465591 HDGFL1Q5TGJ6 251 aa28.36■■■□□ 2.13
LIME1-203ENST00000465591 DUSP27Q5VZP5 1158 aa28.36■■■□□ 2.13
LIME1-203ENST00000465591 HOXB7P09629 217 aa28.35■■■□□ 2.13
LIME1-203ENST00000465591 GTF2E1P29083 439 aaPredicted RBP28.35■■■□□ 2.13
LIME1-203ENST00000465591 NYXQ9GZU5 481 aa28.35■■■□□ 2.13
LIME1-203ENST00000465591 IBTKQ9P2D0 1353 aaPredicted RBP28.35■■■□□ 2.13
LIME1-203ENST00000465591 NTSR2O95665 410 aa28.34■■■□□ 2.13
LIME1-203ENST00000465591 NPR1P16066 1061 aa28.34■■■□□ 2.13
LIME1-203ENST00000465591 TIAM2Q8IVF5 1701 aa28.34■■■□□ 2.13
LIME1-203ENST00000465591 LMNB1P20700 586 aa28.33■■■□□ 2.13
LIME1-203ENST00000465591 GNAI1P63096 354 aa28.33■■■□□ 2.13
LIME1-203ENST00000465591 C7orf43Q8WVR3 580 aa28.33■■■□□ 2.13
LIME1-203ENST00000465591 NMRK2Q9NPI5 230 aa28.33■■■□□ 2.13
LIME1-203ENST00000465591 DICER1Q9UPY3 1922 aaKnown RBP28.32■■■□□ 2.12
LIME1-203ENST00000465591 CALD1Q05682 793 aaKnown RBP28.31■■■□□ 2.12
LIME1-203ENST00000465591 RIC1Q4ADV7 1423 aa28.3■■■□□ 2.12
LIME1-203ENST00000465591 ELL2O00472 640 aaPredicted RBP28.3■■■□□ 2.12
LIME1-203ENST00000465591 CRY2Q49AN0 593 aa28.3■■■□□ 2.12
LIME1-203ENST00000465591 PARP10Q53GL7 1025 aa28.29■■■□□ 2.12
LIME1-203ENST00000465591 OLFM4Q6UX06 510 aa28.29■■■□□ 2.12
LIME1-203ENST00000465591 C3orf67Q6ZVT6 689 aa28.29■■■□□ 2.12
LIME1-203ENST00000465591 C8orf58Q8NAV2 365 aa28.29■■■□□ 2.12
LIME1-203ENST00000465591 DBF4Q9UBU7 674 aaPredicted RBP28.28■■■□□ 2.12
LIME1-203ENST00000465591 CCDC27Q2M243 656 aa28.27■■■□□ 2.12
LIME1-203ENST00000465591 WWC1Q8IX03 1113 aa28.27■■■□□ 2.12
LIME1-203ENST00000465591 LTBP3Q9NS15 1303 aa28.26■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms