RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 POLKQ9UBT6 870 aa8.24□□□□□ -1.09
SYNE1-216ENST00000461872 KCNG4Q8TDN1 519 aa8.24□□□□□ -1.09
SYNE1-216ENST00000461872 STAP2Q9UGK3 403 aa8.24□□□□□ -1.09
SYNE1-216ENST00000461872 TMCO3Q6UWJ1 677 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 DNAAF4Q8WXU2 420 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 CCDC196A0A1B0GTZ2 297 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 PXDNLA1KZ92 1463 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 MYOM1P52179 1685 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 PDLIM2Q96JY6 352 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 MAP3K5Q99683 1374 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 TRIM22Q8IYM9 498 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 PLEKHF1Q96S99 279 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 NOL8Q76FK4 1167 aaKnown RBP8.23□□□□□ -1.09
SYNE1-216ENST00000461872 LMBRD1Q9NUN5 540 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 PLEKHG1Q9ULL1 1385 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 ZFYP08048 801 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-216ENST00000461872 C1orf115Q9H7X2 142 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 MYO6Q9UM54 1294 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 JAKMIP1Q96N16 626 aaKnown RBP8.23□□□□□ -1.09
SYNE1-216ENST00000461872 RFX7Q2KHR2 1363 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 ERICH2A1L162 156 aa8.23□□□□□ -1.09
SYNE1-216ENST00000461872 HMGB2P26583 209 aaKnown RBP8.23□□□□□ -1.09
SYNE1-216ENST00000461872 ZNHIT6Q9NWK9 470 aaKnown RBP8.23□□□□□ -1.09
SYNE1-216ENST00000461872 SMC2O95347 1197 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 SPINK5Q9NQ38 1064 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-216ENST00000461872 USP19O94966 1318 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 CDC42BPGQ6DT37 1551 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 IVLP07476 585 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 ZNF165P49910 485 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 TAF7LQ5H9L4 462 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 ZNF853P0CG23 659 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 NLRP6P59044 892 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 IQSEC3Q9UPP2 1182 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-216ENST00000461872 KIF20BQ96Q89 1820 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 CLIP2Q9UDT6 1046 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 AKAP2Q9Y2D5 859 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 CUL4AQ13619 759 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 RAPGEF4Q8WZA2 1011 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 FMNL2Q96PY5 1086 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 TBC1D2BQ9UPU7 963 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 KDM4AO75164 1064 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 TXLNAP40222 546 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 TMED8Q6PL24 325 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-216ENST00000461872 ZNF397Q8NF99 534 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-216ENST00000461872 PLEKHG5O94827 1062 aa8.22□□□□□ -1.09
SYNE1-216ENST00000461872 HSPA4P34932 840 aa8.21□□□□□ -1.09
SYNE1-216ENST00000461872 BRAPQ7Z569 592 aa8.21□□□□□ -1.09
SYNE1-216ENST00000461872 RRAGDQ9NQL2 400 aaPredicted RBP8.21□□□□□ -1.09
SYNE1-216ENST00000461872 CHMLP26374 656 aa8.21□□□□□ -1.09
SYNE1-216ENST00000461872 PANK2Q9BZ23 570 aa8.21□□□□□ -1.09
SYNE1-216ENST00000461872 ME1P48163 572 aa8.21□□□□□ -1.1
SYNE1-216ENST00000461872 PRIM1P49642 420 aaKnown RBP8.21□□□□□ -1.1
SYNE1-216ENST00000461872 SEC24BO95487 1268 aa8.21□□□□□ -1.1
SYNE1-216ENST00000461872 ATP8B1O43520 1251 aa8.21□□□□□ -1.1
SYNE1-216ENST00000461872 IL13P35225 146 aa8.21□□□□□ -1.1
SYNE1-216ENST00000461872 STIM1Q13586 685 aa8.21□□□□□ -1.1
SYNE1-216ENST00000461872 PPRC1Q5VV67 1664 aaKnown RBP8.2□□□□□ -1.1
SYNE1-216ENST00000461872 CDC25BP30305 580 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 SPAG1Q07617 926 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 RHPN1Q8TCX5 695 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 NACAP1Q9BZK3 213 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 ZMYND15Q9H091 742 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 ZNF592Q92610 1267 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 CTAGE1Q96RT6 745 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 XPCQ01831 940 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-216ENST00000461872 DCTN1Q14203 1278 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 AACSQ86V21 672 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 ERO1AQ96HE7 468 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 PSME1Q06323 249 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 NAA16Q6N069 864 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-216ENST00000461872 IQCDQ96DY2 449 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 FOXD4L5Q5VV16 416 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-216ENST00000461872 RIC3Q7Z5B4 369 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 FOXD4L4Q8WXT5 416 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-216ENST00000461872 MRFAP1L1Q96HT8 127 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 NCAPD2Q15021 1401 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 TNRQ92752 1358 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 LRRC7Q96NW7 1537 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 SPG7Q9UQ90 795 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 NT5C2P49902 561 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 CCDC158Q5M9N0 1113 aa8.2□□□□□ -1.1
SYNE1-216ENST00000461872 TNNT1P13805 278 aa8.19□□□□□ -1.1
SYNE1-216ENST00000461872 CT47A1Q5JQC4 288 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-216ENST00000461872 ADGRB1O14514 1584 aa8.19□□□□□ -1.1
SYNE1-216ENST00000461872 PPFIBP1Q86W92 1011 aa8.19□□□□□ -1.1
SYNE1-216ENST00000461872 AMOTL1Q8IY63 956 aa8.19□□□□□ -1.1
SYNE1-216ENST00000461872 RUFY1Q96T51 708 aa8.19□□□□□ -1.1
SYNE1-216ENST00000461872 EXOC6BQ9Y2D4 811 aa8.19□□□□□ -1.1
SYNE1-216ENST00000461872 SGSM2O43147 1006 aa8.19□□□□□ -1.1
SYNE1-216ENST00000461872 IMMTQ16891 758 aaKnown RBP8.19□□□□□ -1.1
SYNE1-216ENST00000461872 SLU7O95391 586 aaKnown RBP8.19□□□□□ -1.1
SYNE1-216ENST00000461872 USP48Q86UV5 1035 aa8.19□□□□□ -1.1
SYNE1-216ENST00000461872 TIGD1Q96MW7 591 aa8.19□□□□□ -1.1
SYNE1-216ENST00000461872 PLEKHG3A1L390 1219 aa8.19□□□□□ -1.1
SYNE1-216ENST00000461872 LINS1Q8NG48 757 aa8.18□□□□□ -1.1
SYNE1-216ENST00000461872 LRRFIP2Q9Y608 721 aaKnown RBP8.18□□□□□ -1.1
SYNE1-216ENST00000461872 RBM27Q9P2N5 1060 aaKnown RBP8.18□□□□□ -1.1
SYNE1-216ENST00000461872 IFT172Q9UG01 1749 aa8.18□□□□□ -1.1
SYNE1-216ENST00000461872 SLC3A2P08195 630 aaKnown RBP8.18□□□□□ -1.1
SYNE1-216ENST00000461872 GJB2P29033 226 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms