RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 TBC1D2BQ9UPU7 963 aa15.36■□□□□ 0.05
VPS52-213ENST00000461743 IBTKQ9P2D0 1353 aaPredicted RBP15.36■□□□□ 0.05
VPS52-213ENST00000461743 DCAF8L1A6NGE4 600 aa15.35■□□□□ 0.05
VPS52-213ENST00000461743 PIP4K2AP48426 406 aaPredicted RBP15.35■□□□□ 0.05
VPS52-213ENST00000461743 NFIXQ14938 502 aa15.35■□□□□ 0.05
VPS52-213ENST00000461743 DUSP27Q5VZP5 1158 aa15.35■□□□□ 0.05
VPS52-213ENST00000461743 LRP10Q7Z4F1 713 aa15.35■□□□□ 0.05
VPS52-213ENST00000461743 KLHL34Q8N239 644 aa15.35■□□□□ 0.05
VPS52-213ENST00000461743 MAP3K15Q6ZN16 1313 aa15.35■□□□□ 0.05
VPS52-213ENST00000461743 FANCIQ9NVI1 1328 aa15.35■□□□□ 0.05
VPS52-213ENST00000461743 EIF2S2P20042 333 aaKnown RBP15.34■□□□□ 0.05
VPS52-213ENST00000461743 PDIA6Q15084 440 aa15.34■□□□□ 0.05
VPS52-213ENST00000461743 KRT24Q2M2I5 525 aa15.34■□□□□ 0.05
VPS52-213ENST00000461743 MYH16Q9H6N6 1097 aa15.34■□□□□ 0.05
VPS52-213ENST00000461743 DBF4Q9UBU7 674 aaPredicted RBP15.34■□□□□ 0.05
VPS52-213ENST00000461743 MYL6BP14649 208 aa15.33■□□□□ 0.04
VPS52-213ENST00000461743 TGFB2P61812 414 aa15.33■□□□□ 0.04
VPS52-213ENST00000461743 UTRNP46939 3433 aa15.33■□□□□ 0.04
VPS52-213ENST00000461743 RIC1Q4ADV7 1423 aa15.33■□□□□ 0.04
VPS52-213ENST00000461743 TBC1D9BQ66K14 1250 aa15.32■□□□□ 0.04
VPS52-213ENST00000461743 MIER1Q8N108 512 aa15.32■□□□□ 0.04
VPS52-213ENST00000461743 NLGN2Q8NFZ4 835 aa15.32■□□□□ 0.04
VPS52-213ENST00000461743 TSR2Q969E8 191 aaKnown RBP15.32■□□□□ 0.04
VPS52-213ENST00000461743 SETDB2Q96T68 719 aa15.32■□□□□ 0.04
VPS52-213ENST00000461743 HYPKQ9NX55 129 aa15.32■□□□□ 0.04
VPS52-213ENST00000461743 CHPF2Q9P2E5 772 aa15.32■□□□□ 0.04
VPS52-213ENST00000461743 SERPINB2P05120 415 aa15.31■□□□□ 0.04
VPS52-213ENST00000461743 CCDC30Q5VVM6 783 aa15.31■□□□□ 0.04
VPS52-213ENST00000461743 PDZRN3Q9UPQ7 1066 aa15.31■□□□□ 0.04
VPS52-213ENST00000461743 TNRC6CQ9HCJ0 1690 aaKnown RBP15.31■□□□□ 0.04
VPS52-213ENST00000461743 MYH3P11055 1940 aa15.31■□□□□ 0.04
VPS52-213ENST00000461743 GOLGA2Q08379 1002 aa15.3■□□□□ 0.04
VPS52-213ENST00000461743 PROSER3Q2NL68 480 aa15.3■□□□□ 0.04
VPS52-213ENST00000461743 HSP90AB3PQ58FF7 597 aa15.3■□□□□ 0.04
VPS52-213ENST00000461743 GIGYF2Q6Y7W6 1299 aaKnown RBP15.3■□□□□ 0.04
VPS52-213ENST00000461743 TTLL7Q6ZT98 887 aa15.3■□□□□ 0.04
VPS52-213ENST00000461743 C8orf58Q8NAV2 365 aa15.3■□□□□ 0.04
VPS52-213ENST00000461743 SALL2Q9Y467 1007 aaPredicted RBP15.3■□□□□ 0.04
VPS52-213ENST00000461743 DDX60Q8IY21 1712 aaKnown RBP15.29■□□□□ 0.04
VPS52-213ENST00000461743 TWISTNBQ3B726 338 aaPredicted RBP15.29■□□□□ 0.04
VPS52-213ENST00000461743 CNBD1Q8NA66 436 aa15.29■□□□□ 0.04
VPS52-213ENST00000461743 RNF123Q5XPI4 1314 aa15.28■□□□□ 0.04
VPS52-213ENST00000461743 SENP3-EIF4A1A0A087X0R7 540 aa15.28■□□□□ 0.04
VPS52-213ENST00000461743 E9PSI1 815 aa15.28■□□□□ 0.04
VPS52-213ENST00000461743 ST5P78524 1137 aa15.28■□□□□ 0.04
VPS52-213ENST00000461743 BICDL1Q6ZP65 573 aa15.28■□□□□ 0.04
VPS52-213ENST00000461743 XAGE3Q8WTP9 111 aa15.28■□□□□ 0.04
VPS52-213ENST00000461743 NECTIN2Q92692 538 aa15.28■□□□□ 0.04
VPS52-213ENST00000461743 NYXQ9GZU5 481 aa15.28■□□□□ 0.04
VPS52-213ENST00000461743 NIP7Q9Y221 180 aaKnown RBP eCLIP15.28■□□□□ 0.04
VPS52-213ENST00000461743 ANXA1P04083 346 aa15.27■□□□□ 0.04
VPS52-213ENST00000461743 HLFQ16534 295 aa15.27■□□□□ 0.04
VPS52-213ENST00000461743 PARP10Q53GL7 1025 aa15.27■□□□□ 0.04
VPS52-213ENST00000461743 PRR5LQ6MZQ0 368 aa15.27■□□□□ 0.04
VPS52-213ENST00000461743 COPS6Q7L5N1 327 aa15.27■□□□□ 0.04
VPS52-213ENST00000461743 NBPF5PQ86XG9 351 aaPredicted RBP15.27■□□□□ 0.04
VPS52-213ENST00000461743 TSPYL6Q8N831 410 aa15.27■□□□□ 0.04
VPS52-213ENST00000461743 STK31Q9BXU1 1019 aa15.27■□□□□ 0.04
VPS52-213ENST00000461743 ZBTB3Q9H5J0 574 aa15.27■□□□□ 0.04
VPS52-213ENST00000461743 PLBD2Q8NHP8 589 aa15.26■□□□□ 0.03
VPS52-213ENST00000461743 BRIP1Q9BX63 1249 aa15.26■□□□□ 0.03
VPS52-213ENST00000461743 SBF1O95248 1867 aa15.26■□□□□ 0.03
VPS52-213ENST00000461743 FER1L6Q2WGJ9 1857 aa15.26■□□□□ 0.03
VPS52-213ENST00000461743 ELL2O00472 640 aaPredicted RBP15.25■□□□□ 0.03
VPS52-213ENST00000461743 NPHP1O15259 732 aa15.25■□□□□ 0.03
VPS52-213ENST00000461743 GRIN3BO60391 1043 aa15.25■□□□□ 0.03
VPS52-213ENST00000461743 PDE6BP35913 854 aa15.25■□□□□ 0.03
VPS52-213ENST00000461743 TPTE2Q6XPS3 522 aa15.25■□□□□ 0.03
VPS52-213ENST00000461743 ZNF34Q8IZ26 560 aa15.25■□□□□ 0.03
VPS52-213ENST00000461743 SPINK5Q9NQ38 1064 aaPredicted RBP15.25■□□□□ 0.03
VPS52-213ENST00000461743 DICER1Q9UPY3 1922 aaKnown RBP15.25■□□□□ 0.03
VPS52-213ENST00000461743 UBN2Q6ZU65 1347 aa15.24■□□□□ 0.03
VPS52-213ENST00000461743 DDX58O95786 925 aaKnown RBP15.24■□□□□ 0.03
VPS52-213ENST00000461743 EXOSC9Q06265 439 aaKnown RBP15.24■□□□□ 0.03
VPS52-213ENST00000461743 GPR162Q16538 588 aa15.24■□□□□ 0.03
VPS52-213ENST00000461743 PPP1R42Q7Z4L9 355 aa15.24■□□□□ 0.03
VPS52-213ENST00000461743 CCDC88AQ3V6T2 1871 aa15.24■□□□□ 0.03
VPS52-213ENST00000461743 SLX4Q8IY92 1834 aa15.23■□□□□ 0.03
VPS52-213ENST00000461743 DPEP1P16444 411 aa15.23■□□□□ 0.03
VPS52-213ENST00000461743 AIMP1Q12904 312 aaKnown RBP15.23■□□□□ 0.03
VPS52-213ENST00000461743 ANKRD13DQ6ZTN6 518 aa15.23■□□□□ 0.03
VPS52-213ENST00000461743 VAMP4O75379 141 aa15.22■□□□□ 0.03
VPS52-213ENST00000461743 SLFN5Q08AF3 891 aa15.22■□□□□ 0.03
VPS52-213ENST00000461743 TCIRG1Q13488 830 aa15.22■□□□□ 0.03
VPS52-213ENST00000461743 ZNF428Q96B54 188 aa15.22■□□□□ 0.03
VPS52-213ENST00000461743 PIM2Q9P1W9 311 aa15.22■□□□□ 0.03
VPS52-213ENST00000461743 ABCC12Q96J65 1359 aa15.22■□□□□ 0.03
VPS52-213ENST00000461743 A0A0G2JLW4 131 aa15.21■□□□□ 0.03
VPS52-213ENST00000461743 H0YIN7 160 aa15.21■□□□□ 0.03
VPS52-213ENST00000461743 NTSR2O95665 410 aa15.21■□□□□ 0.03
VPS52-213ENST00000461743 CT47B1P0C2W7 299 aaPredicted RBP15.21■□□□□ 0.03
VPS52-213ENST00000461743 YBX3P16989 372 aaKnown RBP eCLIP15.21■□□□□ 0.03
VPS52-213ENST00000461743 KCNA3P22001 575 aa15.21■□□□□ 0.03
VPS52-213ENST00000461743 GPTP24298 496 aa15.21■□□□□ 0.03
VPS52-213ENST00000461743 KLRG2A4D1S0 409 aaPredicted RBP15.2■□□□□ 0.02
VPS52-213ENST00000461743 GTF2E1P29083 439 aaPredicted RBP15.2■□□□□ 0.02
VPS52-213ENST00000461743 TRIM28Q13263 835 aaKnown RBP15.2■□□□□ 0.02
VPS52-213ENST00000461743 C2CD5Q86YS7 1000 aa15.2■□□□□ 0.02
VPS52-213ENST00000461743 TRMT2AQ8IZ69 625 aaKnown RBP15.2■□□□□ 0.02
VPS52-213ENST00000461743 PHAXQ9H814 394 aaKnown RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms