RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 TTLL6Q8N841 843 aa18.35■□□□□ 0.53
USP4-206ENST00000461553 BRIP1Q9BX63 1249 aa18.35■□□□□ 0.53
USP4-206ENST00000461553 TSPYL4Q9UJ04 414 aa18.35■□□□□ 0.53
USP4-206ENST00000461553 RGL2O15211 777 aa18.34■□□□□ 0.53
USP4-206ENST00000461553 EIF4A1P60842 406 aaKnown RBP18.34■□□□□ 0.53
USP4-206ENST00000461553 RNF181Q9P0P0 153 aa18.34■□□□□ 0.53
USP4-206ENST00000461553 SLX4Q8IY92 1834 aa18.34■□□□□ 0.53
USP4-206ENST00000461553 ANKRD36CQ5JPF3 1778 aa18.34■□□□□ 0.53
USP4-206ENST00000461553 TMPOP42166 694 aaKnown RBP18.33■□□□□ 0.52
USP4-206ENST00000461553 NBPF5PQ86XG9 351 aaPredicted RBP18.33■□□□□ 0.52
USP4-206ENST00000461553 CCDC146Q8IYE0 955 aa18.33■□□□□ 0.52
USP4-206ENST00000461553 CCDC24Q8N4L8 307 aa18.33■□□□□ 0.52
USP4-206ENST00000461553 ZNF622Q969S3 477 aaKnown RBP eCLIP18.33■□□□□ 0.52
USP4-206ENST00000461553 RASSF7Q02833 373 aa18.32■□□□□ 0.52
USP4-206ENST00000461553 KIF6Q6ZMV9 814 aa18.31■□□□□ 0.52
USP4-206ENST00000461553 PRKRIP1Q9H875 184 aaPredicted RBP18.31■□□□□ 0.52
USP4-206ENST00000461553 NIP7Q9Y221 180 aaKnown RBP eCLIP18.31■□□□□ 0.52
USP4-206ENST00000461553 ERBB4Q15303 1308 aa18.3■□□□□ 0.52
USP4-206ENST00000461553 RUNDC1Q96C34 613 aa18.3■□□□□ 0.52
USP4-206ENST00000461553 BABAM1Q9NWV8 329 aa18.3■□□□□ 0.52
USP4-206ENST00000461553 RRP7AQ9Y3A4 280 aaKnown RBP18.3■□□□□ 0.52
USP4-206ENST00000461553 ZC3H4Q9UPT8 1303 aaKnown RBP18.29■□□□□ 0.52
USP4-206ENST00000461553 CEP350Q5VT06 3117 aa18.29■□□□□ 0.52
USP4-206ENST00000461553 KIF3CO14782 793 aa18.29■□□□□ 0.52
USP4-206ENST00000461553 NEUROD2Q15784 382 aa18.29■□□□□ 0.52
USP4-206ENST00000461553 NGEFQ8N5V2 710 aa18.29■□□□□ 0.52
USP4-206ENST00000461553 MAP3K15Q6ZN16 1313 aa18.28■□□□□ 0.52
USP4-206ENST00000461553 KDM2BQ8NHM5 1336 aa18.28■□□□□ 0.52
USP4-206ENST00000461553 MYL6BP14649 208 aa18.28■□□□□ 0.52
USP4-206ENST00000461553 ZEB1P37275 1124 aaPredicted RBP18.28■□□□□ 0.52
USP4-206ENST00000461553 CNKSR1Q969H4 720 aa18.28■□□□□ 0.52
USP4-206ENST00000461553 LMNB1P20700 586 aa18.27■□□□□ 0.52
USP4-206ENST00000461553 HLFQ16534 295 aa18.27■□□□□ 0.52
USP4-206ENST00000461553 STYK1Q6J9G0 422 aa18.27■□□□□ 0.52
USP4-206ENST00000461553 TPTE2Q6XPS3 522 aa18.27■□□□□ 0.52
USP4-206ENST00000461553 MASTLQ96GX5 879 aa18.27■□□□□ 0.52
USP4-206ENST00000461553 FAM177BA6PVY3 158 aa18.26■□□□□ 0.51
USP4-206ENST00000461553 ERVV-1B6SEH8 477 aa18.26■□□□□ 0.51
USP4-206ENST00000461553 SRGNP10124 158 aa18.26■□□□□ 0.51
USP4-206ENST00000461553 NMRK2Q9NPI5 230 aa18.26■□□□□ 0.51
USP4-206ENST00000461553 IBTKQ9P2D0 1353 aaPredicted RBP18.26■□□□□ 0.51
USP4-206ENST00000461553 NFKBIEO00221 500 aa18.25■□□□□ 0.51
USP4-206ENST00000461553 C21orf2O43822 256 aa18.25■□□□□ 0.51
USP4-206ENST00000461553 GTF2E1P29083 439 aaPredicted RBP18.25■□□□□ 0.51
USP4-206ENST00000461553 SOGA3Q5TF21 947 aa18.25■□□□□ 0.51
USP4-206ENST00000461553 PRPF40BQ6NWY9 871 aaKnown RBP18.25■□□□□ 0.51
USP4-206ENST00000461553 NYXQ9GZU5 481 aa18.25■□□□□ 0.51
USP4-206ENST00000461553 ZBTB3Q9H5J0 574 aa18.25■□□□□ 0.51
USP4-206ENST00000461553 ZNF219Q9P2Y4 722 aaPredicted RBP18.25■□□□□ 0.51
USP4-206ENST00000461553 ADAMTS8Q9UP79 889 aa18.25■□□□□ 0.51
USP4-206ENST00000461553 EIF2S2P20042 333 aaKnown RBP18.24■□□□□ 0.51
USP4-206ENST00000461553 TTLL7Q6ZT98 887 aa18.24■□□□□ 0.51
USP4-206ENST00000461553 ABCC12Q96J65 1359 aa18.24■□□□□ 0.51
USP4-206ENST00000461553 NPR1P16066 1061 aa18.23■□□□□ 0.51
USP4-206ENST00000461553 C16orf71Q8IYS4 520 aaPredicted RBP18.23■□□□□ 0.51
USP4-206ENST00000461553 TAOK3Q9H2K8 898 aa18.23■□□□□ 0.51
USP4-206ENST00000461553 LAS1LQ9Y4W2 734 aaKnown RBP18.23■□□□□ 0.51
USP4-206ENST00000461553 RIC1Q4ADV7 1423 aa18.23■□□□□ 0.51
USP4-206ENST00000461553 LAMB2P55268 1798 aa18.22■□□□□ 0.51
USP4-206ENST00000461553 TOMM70O94826 608 aa18.22■□□□□ 0.51
USP4-206ENST00000461553 HSPA6P17066 643 aa18.22■□□□□ 0.51
USP4-206ENST00000461553 TRIM35Q9UPQ4 493 aa18.22■□□□□ 0.51
USP4-206ENST00000461553 WDR90Q96KV7 1748 aa18.22■□□□□ 0.51
USP4-206ENST00000461553 LTBP3Q9NS15 1303 aa18.22■□□□□ 0.51
USP4-206ENST00000461553 GPTP24298 496 aa18.21■□□□□ 0.51
USP4-206ENST00000461553 PRELPP51888 382 aa18.21■□□□□ 0.51
USP4-206ENST00000461553 UBN2Q6ZU65 1347 aa18.21■□□□□ 0.51
USP4-206ENST00000461553 CHL1O00533 1208 aa18.2■□□□□ 0.5
USP4-206ENST00000461553 GIGYF2Q6Y7W6 1299 aaKnown RBP18.2■□□□□ 0.5
USP4-206ENST00000461553 KLRG2A4D1S0 409 aaPredicted RBP18.19■□□□□ 0.5
USP4-206ENST00000461553 PROSER3Q2NL68 480 aa18.19■□□□□ 0.5
USP4-206ENST00000461553 CCDC93Q567U6 631 aa18.19■□□□□ 0.5
USP4-206ENST00000461553 NUTM1Q86Y26 1132 aa18.19■□□□□ 0.5
USP4-206ENST00000461553 ANXA1P04083 346 aa18.18■□□□□ 0.5
USP4-206ENST00000461553 PDIA6Q15084 440 aa18.18■□□□□ 0.5
USP4-206ENST00000461553 LRP10Q7Z4F1 713 aa18.18■□□□□ 0.5
USP4-206ENST00000461553 RBM46Q8TBY0 533 aaKnown RBP18.18■□□□□ 0.5
USP4-206ENST00000461553 NECTIN2Q92692 538 aa18.18■□□□□ 0.5
USP4-206ENST00000461553 GLTPD2A6NH11 291 aa18.17■□□□□ 0.5
USP4-206ENST00000461553 HOXB7P09629 217 aa18.17■□□□□ 0.5
USP4-206ENST00000461553 KRT24Q2M2I5 525 aa18.17■□□□□ 0.5
USP4-206ENST00000461553 ERFEQ4G0M1 354 aa18.17■□□□□ 0.5
USP4-206ENST00000461553 PARP10Q53GL7 1025 aa18.17■□□□□ 0.5
USP4-206ENST00000461553 PPP1R42Q7Z4L9 355 aa18.17■□□□□ 0.5
USP4-206ENST00000461553 ZNF34Q8IZ26 560 aa18.17■□□□□ 0.5
USP4-206ENST00000461553 RRAGCQ9HB90 399 aa18.17■□□□□ 0.5
USP4-206ENST00000461553 ALDH1B1P30837 517 aa18.16■□□□□ 0.5
USP4-206ENST00000461553 CALD1Q05682 793 aaKnown RBP18.16■□□□□ 0.5
USP4-206ENST00000461553 CRY2Q49AN0 593 aa18.16■□□□□ 0.5
USP4-206ENST00000461553 HSP90AB3PQ58FF7 597 aa18.16■□□□□ 0.5
USP4-206ENST00000461553 HDGFL1Q5TGJ6 251 aa18.16■□□□□ 0.5
USP4-206ENST00000461553 RPGRQ92834 1020 aaKnown RBP18.16■□□□□ 0.5
USP4-206ENST00000461553 CFAP44Q96MT7 982 aa18.16■□□□□ 0.5
USP4-206ENST00000461553 SCN4AP35499 1836 aa18.15■□□□□ 0.5
USP4-206ENST00000461553 APAF1O14727 1248 aa18.15■□□□□ 0.5
USP4-206ENST00000461553 NTSR2O95665 410 aa18.15■□□□□ 0.5
USP4-206ENST00000461553 SUSD4Q5VX71 490 aa18.15■□□□□ 0.5
USP4-206ENST00000461553 XAGE3Q8WTP9 111 aa18.15■□□□□ 0.5
USP4-206ENST00000461553 DDX21Q9NR30 783 aaKnown RBP eCLIP18.15■□□□□ 0.5
USP4-206ENST00000461553 DDX60Q8IY21 1712 aaKnown RBP18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms