RNA–Protein interactions for RNA: ENST00000458277.1

HMGB4-202, Transcript of high mobility group box 4, humanhuman

TSL 3

Gene HMGB4, Length 437 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-202ENST00000458277 TMEM51Q9NW97 253 aa7.09□□□□□ -1.27
HMGB4-202ENST00000458277 TNIKQ9UKE5 1360 aa7.08□□□□□ -1.28
HMGB4-202ENST00000458277 A0A1B0GTH6 734 aa7.08□□□□□ -1.28
HMGB4-202ENST00000458277 BNIP3LO60238 219 aa7.08□□□□□ -1.28
HMGB4-202ENST00000458277 GIGYF1O75420 1035 aaPredicted RBP7.08□□□□□ -1.28
HMGB4-202ENST00000458277 PPP1R15AO75807 674 aaPredicted RBP7.08□□□□□ -1.28
HMGB4-202ENST00000458277 ARAFP10398 606 aa7.08□□□□□ -1.28
HMGB4-202ENST00000458277 HNRNPUQ00839 825 aaKnown RBP eCLIP7.08□□□□□ -1.28
HMGB4-202ENST00000458277 LRP8Q14114 963 aa7.08□□□□□ -1.28
HMGB4-202ENST00000458277 CC2D2BQ6DHV5 1058 aa7.08□□□□□ -1.28
HMGB4-202ENST00000458277 B4GALNT3Q6L9W6 998 aa7.08□□□□□ -1.28
HMGB4-202ENST00000458277 EPS8L1Q8TE68 723 aa7.08□□□□□ -1.28
HMGB4-202ENST00000458277 TRIM66O15016 1216 aa7.07□□□□□ -1.28
HMGB4-202ENST00000458277 HYAL3O43820 417 aaPredicted RBP7.07□□□□□ -1.28
HMGB4-202ENST00000458277 ERVK-9P63128 1117 aa7.07□□□□□ -1.28
HMGB4-202ENST00000458277 LBRQ14739 615 aaKnown RBP7.07□□□□□ -1.28
HMGB4-202ENST00000458277 EFHC2Q5JST6 749 aa7.07□□□□□ -1.28
HMGB4-202ENST00000458277 CYP2U1Q7Z449 544 aa7.07□□□□□ -1.28
HMGB4-202ENST00000458277 BACH2Q9BYV9 841 aa7.07□□□□□ -1.28
HMGB4-202ENST00000458277 MYH16Q9H6N6 1097 aa7.07□□□□□ -1.28
HMGB4-202ENST00000458277 RAB6BQ9NRW1 208 aa7.07□□□□□ -1.28
HMGB4-202ENST00000458277 DHX57Q6P158 1386 aaKnown RBP7.07□□□□□ -1.28
HMGB4-202ENST00000458277 ZBED9Q6R2W3 1325 aa7.06□□□□□ -1.28
HMGB4-202ENST00000458277 CCDC66A2RUB6 948 aa7.06□□□□□ -1.28
HMGB4-202ENST00000458277 APBA3O96018 575 aa7.06□□□□□ -1.28
HMGB4-202ENST00000458277 FAM193AP78312 1265 aa7.06□□□□□ -1.28
HMGB4-202ENST00000458277 DCAF11Q8TEB1 546 aa7.06□□□□□ -1.28
HMGB4-202ENST00000458277 CCDC94Q9BW85 323 aaPredicted RBP7.06□□□□□ -1.28
HMGB4-202ENST00000458277 LAMC3Q9Y6N6 1575 aa7.06□□□□□ -1.28
HMGB4-202ENST00000458277 CFTRP13569 1480 aa7.05□□□□□ -1.28
HMGB4-202ENST00000458277 OFD1O75665 1012 aa7.05□□□□□ -1.28
HMGB4-202ENST00000458277 CC2D1BQ5T0F9 858 aaKnown RBP7.05□□□□□ -1.28
HMGB4-202ENST00000458277 LCE1DQ5T752 114 aa7.05□□□□□ -1.28
HMGB4-202ENST00000458277 PLCD4Q9BRC7 762 aa7.05□□□□□ -1.28
HMGB4-202ENST00000458277 NDFIP2Q9NV92 336 aa7.05□□□□□ -1.28
HMGB4-202ENST00000458277 GEMIN8Q9NWZ8 242 aaKnown RBP7.05□□□□□ -1.28
HMGB4-202ENST00000458277 PHLDB1Q86UU1 1377 aa7.05□□□□□ -1.28
HMGB4-202ENST00000458277 NESP48681 1621 aa7.05□□□□□ -1.28
HMGB4-202ENST00000458277 RNF123Q5XPI4 1314 aa7.04□□□□□ -1.28
HMGB4-202ENST00000458277 CEP162Q5TB80 1403 aa7.04□□□□□ -1.28
HMGB4-202ENST00000458277 MSX1P28360 303 aa7.04□□□□□ -1.28
HMGB4-202ENST00000458277 SCTRP47872 440 aa7.04□□□□□ -1.28
HMGB4-202ENST00000458277 BECN1Q14457 450 aa7.04□□□□□ -1.28
HMGB4-202ENST00000458277 HS1BP3Q53T59 392 aa7.04□□□□□ -1.28
HMGB4-202ENST00000458277 PNMA1Q8ND90 353 aa7.04□□□□□ -1.28
HMGB4-202ENST00000458277 HDAC5Q9UQL6 1122 aa7.04□□□□□ -1.28
HMGB4-202ENST00000458277 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.04□□□□□ -1.28
HMGB4-202ENST00000458277 CADPSQ9ULU8 1353 aa7.04□□□□□ -1.28
HMGB4-202ENST00000458277 SMG6Q86US8 1419 aaKnown RBP7.03□□□□□ -1.28
HMGB4-202ENST00000458277 CENPCQ03188 943 aa7.03□□□□□ -1.28
HMGB4-202ENST00000458277 DDX10Q13206 875 aaKnown RBP7.03□□□□□ -1.28
HMGB4-202ENST00000458277 RALBP1Q15311 655 aa7.03□□□□□ -1.28
HMGB4-202ENST00000458277 CTR9Q6PD62 1173 aa7.03□□□□□ -1.28
HMGB4-202ENST00000458277 KIAA1211Q6ZU35 1233 aa7.03□□□□□ -1.28
HMGB4-202ENST00000458277 CREBRFQ8IUR6 639 aa7.03□□□□□ -1.28
HMGB4-202ENST00000458277 ZSCAN10Q96SZ4 725 aaPredicted RBP7.03□□□□□ -1.28
HMGB4-202ENST00000458277 KLF15Q9UIH9 416 aa7.03□□□□□ -1.28
HMGB4-202ENST00000458277 PCDHB9Q9Y5E1 797 aa7.03□□□□□ -1.28
HMGB4-202ENST00000458277 FSD2A1L4K1 749 aa7.02□□□□□ -1.29
HMGB4-202ENST00000458277 ADH6P28332 368 aa7.02□□□□□ -1.29
HMGB4-202ENST00000458277 MCM5P33992 734 aa7.02□□□□□ -1.29
HMGB4-202ENST00000458277 PLCB2Q00722 1185 aa7.02□□□□□ -1.29
HMGB4-202ENST00000458277 PRRT3Q5FWE3 981 aa7.02□□□□□ -1.29
HMGB4-202ENST00000458277 FCHSD1Q86WN1 690 aa7.02□□□□□ -1.29
HMGB4-202ENST00000458277 CNPY4Q8N129 248 aa7.02□□□□□ -1.29
HMGB4-202ENST00000458277 CNKSR1Q969H4 720 aa7.02□□□□□ -1.29
HMGB4-202ENST00000458277 ESF1Q9H501 851 aaKnown RBP7.02□□□□□ -1.29
HMGB4-202ENST00000458277 EFCC1Q9HA90 598 aa7.02□□□□□ -1.29
HMGB4-202ENST00000458277 NINLQ9Y2I6 1382 aa7.02□□□□□ -1.29
HMGB4-202ENST00000458277 FAM229AH3BQW9 127 aa7.01□□□□□ -1.29
HMGB4-202ENST00000458277 MSNP26038 577 aaKnown RBP7.01□□□□□ -1.29
HMGB4-202ENST00000458277 CALRP27797 417 aaKnown RBP7.01□□□□□ -1.29
HMGB4-202ENST00000458277 C4orf17Q53FE4 359 aa7.01□□□□□ -1.29
HMGB4-202ENST00000458277 GNASQ5JWF2 1037 aa7.01□□□□□ -1.29
HMGB4-202ENST00000458277 MCTP1Q6DN14 999 aa7.01□□□□□ -1.29
HMGB4-202ENST00000458277 TMEM214Q6NUQ4 689 aaKnown RBP7.01□□□□□ -1.29
HMGB4-202ENST00000458277 WWC1Q8IX03 1113 aa7.01□□□□□ -1.29
HMGB4-202ENST00000458277 ZNF830Q96NB3 372 aaPredicted RBP7.01□□□□□ -1.29
HMGB4-202ENST00000458277 OSBPL3Q9H4L5 887 aa7.01□□□□□ -1.29
HMGB4-202ENST00000458277 CUX2O14529 1486 aa7□□□□□ -1.29
HMGB4-202ENST00000458277 SPDYE3A6NKU9 549 aa7□□□□□ -1.29
HMGB4-202ENST00000458277 AP1G2O75843 785 aa7□□□□□ -1.29
HMGB4-202ENST00000458277 FBXO31Q5XUX0 539 aaPredicted RBP7□□□□□ -1.29
HMGB4-202ENST00000458277 ZC3H15Q8WU90 426 aaKnown RBP7□□□□□ -1.29
HMGB4-202ENST00000458277 ESYT1Q9BSJ8 1104 aa7□□□□□ -1.29
HMGB4-202ENST00000458277 HMX1Q9NP08 348 aaPredicted RBP7□□□□□ -1.29
HMGB4-202ENST00000458277 IL2RAP01589 272 aa6.99□□□□□ -1.29
HMGB4-202ENST00000458277 ZSCAN20P17040 1043 aaPredicted RBP6.99□□□□□ -1.29
HMGB4-202ENST00000458277 CCDC173Q0VFZ6 552 aa6.99□□□□□ -1.29
HMGB4-202ENST00000458277 ZSCAN30Q86W11 494 aa6.99□□□□□ -1.29
HMGB4-202ENST00000458277 RBM28Q9NW13 759 aaKnown RBP6.99□□□□□ -1.29
HMGB4-202ENST00000458277 ZHX1Q9UKY1 873 aaPredicted RBP6.99□□□□□ -1.29
HMGB4-202ENST00000458277 KIF3AQ9Y496 699 aa6.99□□□□□ -1.29
HMGB4-202ENST00000458277 CEP164Q9UPV0 1460 aa6.98□□□□□ -1.29
HMGB4-202ENST00000458277 TRAK2O60296 914 aa6.98□□□□□ -1.29
HMGB4-202ENST00000458277 XRCC6P12956 609 aaKnown RBP eCLIP6.98□□□□□ -1.29
HMGB4-202ENST00000458277 YBX3P16989 372 aaKnown RBP eCLIP6.98□□□□□ -1.29
HMGB4-202ENST00000458277 CD33P20138 364 aa6.98□□□□□ -1.29
HMGB4-202ENST00000458277 PCBP4P57723 403 aaKnown RBP6.98□□□□□ -1.29
HMGB4-202ENST00000458277 IRX6P78412 446 aaPredicted RBP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms