RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 IL16Q14005 1332 aa25.92■■□□□ 1.74
COL9A3-202ENST00000452372 KRT24Q2M2I5 525 aa25.92■■□□□ 1.74
COL9A3-202ENST00000452372 NRXN2Q9P2S2 1712 aa25.91■■□□□ 1.74
COL9A3-202ENST00000452372 WDR63Q8IWG1 891 aa25.91■■□□□ 1.74
COL9A3-202ENST00000452372 TBC1D2BQ9UPU7 963 aa25.91■■□□□ 1.74
COL9A3-202ENST00000452372 ERBB4Q15303 1308 aa25.89■■□□□ 1.74
COL9A3-202ENST00000452372 SERPINB2P05120 415 aa25.89■■□□□ 1.74
COL9A3-202ENST00000452372 HOXB7P09629 217 aa25.89■■□□□ 1.74
COL9A3-202ENST00000452372 EIF2S2P20042 333 aaKnown RBP25.89■■□□□ 1.74
COL9A3-202ENST00000452372 DALRD3Q5D0E6 543 aaKnown RBP25.89■■□□□ 1.74
COL9A3-202ENST00000452372 KIF3CO14782 793 aa25.88■■□□□ 1.73
COL9A3-202ENST00000452372 DZIP3Q86Y13 1208 aaKnown RBP25.88■■□□□ 1.73
COL9A3-202ENST00000452372 DUSP27Q5VZP5 1158 aa25.87■■□□□ 1.73
COL9A3-202ENST00000452372 CAMTA2O94983 1202 aa25.85■■□□□ 1.73
COL9A3-202ENST00000452372 PDIA6Q15084 440 aa25.85■■□□□ 1.73
COL9A3-202ENST00000452372 SBF1O95248 1867 aa25.84■■□□□ 1.73
COL9A3-202ENST00000452372 MYL6BP14649 208 aa25.84■■□□□ 1.73
COL9A3-202ENST00000452372 TBC1D9BQ66K14 1250 aa25.84■■□□□ 1.73
COL9A3-202ENST00000452372 TSR2Q969E8 191 aaKnown RBP25.84■■□□□ 1.73
COL9A3-202ENST00000452372 C9orf131Q5VYM1 1079 aa25.83■■□□□ 1.73
COL9A3-202ENST00000452372 BICDL1Q6ZP65 573 aa25.83■■□□□ 1.73
COL9A3-202ENST00000452372 C8orf58Q8NAV2 365 aa25.83■■□□□ 1.73
COL9A3-202ENST00000452372 SCN7AQ01118 1682 aa25.83■■□□□ 1.73
COL9A3-202ENST00000452372 CARMIL3Q8ND23 1372 aa25.82■■□□□ 1.72
COL9A3-202ENST00000452372 RGL2O15211 777 aa25.82■■□□□ 1.72
COL9A3-202ENST00000452372 HDGFL1Q5TGJ6 251 aa25.82■■□□□ 1.72
COL9A3-202ENST00000452372 LRP10Q7Z4F1 713 aa25.82■■□□□ 1.72
COL9A3-202ENST00000452372 NECTIN2Q92692 538 aa25.82■■□□□ 1.72
COL9A3-202ENST00000452372 ZNF521Q96K83 1311 aa25.82■■□□□ 1.72
COL9A3-202ENST00000452372 ELL2O00472 640 aaPredicted RBP25.81■■□□□ 1.72
COL9A3-202ENST00000452372 CLEC4GQ6UXB4 293 aa25.81■■□□□ 1.72
COL9A3-202ENST00000452372 DDX21Q9NR30 783 aaKnown RBP eCLIP25.81■■□□□ 1.72
COL9A3-202ENST00000452372 BCORQ6W2J9 1755 aa25.81■■□□□ 1.72
COL9A3-202ENST00000452372 PROSER3Q2NL68 480 aa25.79■■□□□ 1.72
COL9A3-202ENST00000452372 SPINK5Q9NQ38 1064 aaPredicted RBP25.79■■□□□ 1.72
COL9A3-202ENST00000452372 ZNF652Q9Y2D9 606 aa25.79■■□□□ 1.72
COL9A3-202ENST00000452372 DLEC1Q9Y238 1755 aa25.79■■□□□ 1.72
COL9A3-202ENST00000452372 ANKRD31Q8N7Z5 1873 aa25.79■■□□□ 1.72
COL9A3-202ENST00000452372 ERVV-1B6SEH8 477 aa25.78■■□□□ 1.72
COL9A3-202ENST00000452372 ANXA1P04083 346 aa25.78■■□□□ 1.72
COL9A3-202ENST00000452372 TTLL7Q6ZT98 887 aa25.78■■□□□ 1.72
COL9A3-202ENST00000452372 CHMP4AQ9BY43 222 aa25.78■■□□□ 1.72
COL9A3-202ENST00000452372 FANCIQ9NVI1 1328 aa25.78■■□□□ 1.72
COL9A3-202ENST00000452372 PRELPP51888 382 aa25.77■■□□□ 1.72
COL9A3-202ENST00000452372 KIF6Q6ZMV9 814 aa25.77■■□□□ 1.72
COL9A3-202ENST00000452372 C2CD5Q86YS7 1000 aa25.77■■□□□ 1.72
COL9A3-202ENST00000452372 TSPYL6Q8N831 410 aa25.77■■□□□ 1.72
COL9A3-202ENST00000452372 NMRK2Q9NPI5 230 aa25.77■■□□□ 1.72
COL9A3-202ENST00000452372 CHPF2Q9P2E5 772 aa25.77■■□□□ 1.72
COL9A3-202ENST00000452372 DBF4Q9UBU7 674 aaPredicted RBP25.77■■□□□ 1.72
COL9A3-202ENST00000452372 GOLGA2Q08379 1002 aa25.76■■□□□ 1.71
COL9A3-202ENST00000452372 PRR5LQ6MZQ0 368 aa25.76■■□□□ 1.71
COL9A3-202ENST00000452372 CCDC24Q8N4L8 307 aa25.76■■□□□ 1.71
COL9A3-202ENST00000452372 MYH16Q9H6N6 1097 aa25.76■■□□□ 1.71
COL9A3-202ENST00000452372 MAP3K15Q6ZN16 1313 aa25.76■■□□□ 1.71
COL9A3-202ENST00000452372 HSPA6P17066 643 aa25.75■■□□□ 1.71
COL9A3-202ENST00000452372 HLFQ16534 295 aa25.75■■□□□ 1.71
COL9A3-202ENST00000452372 TTLL6Q8N841 843 aa25.75■■□□□ 1.71
COL9A3-202ENST00000452372 SETDB2Q96T68 719 aa25.75■■□□□ 1.71
COL9A3-202ENST00000452372 H0YIN7 160 aa25.74■■□□□ 1.71
COL9A3-202ENST00000452372 COPS6Q7L5N1 327 aa25.74■■□□□ 1.71
COL9A3-202ENST00000452372 BRIP1Q9BX63 1249 aa25.74■■□□□ 1.71
COL9A3-202ENST00000452372 RNF181Q9P0P0 153 aa25.74■■□□□ 1.71
COL9A3-202ENST00000452372 TWISTNBQ3B726 338 aaPredicted RBP25.73■■□□□ 1.71
COL9A3-202ENST00000452372 XAGE3Q8WTP9 111 aa25.73■■□□□ 1.71
COL9A3-202ENST00000452372 HYPKQ9NX55 129 aa25.73■■□□□ 1.71
COL9A3-202ENST00000452372 NUP98P52948 1817 aa25.72■■□□□ 1.71
COL9A3-202ENST00000452372 RASSF7Q02833 373 aa25.72■■□□□ 1.71
COL9A3-202ENST00000452372 CCDC30Q5VVM6 783 aa25.72■■□□□ 1.71
COL9A3-202ENST00000452372 ZBTB3Q9H5J0 574 aa25.72■■□□□ 1.71
COL9A3-202ENST00000452372 EXOSC9Q06265 439 aaKnown RBP25.71■■□□□ 1.71
COL9A3-202ENST00000452372 AIMP1Q12904 312 aaKnown RBP25.71■■□□□ 1.71
COL9A3-202ENST00000452372 NIP7Q9Y221 180 aaKnown RBP eCLIP25.71■■□□□ 1.71
COL9A3-202ENST00000452372 TOMM70O94826 608 aa25.7■■□□□ 1.7
COL9A3-202ENST00000452372 GIGYF2Q6Y7W6 1299 aaKnown RBP25.7■■□□□ 1.7
COL9A3-202ENST00000452372 CCDC88AQ3V6T2 1871 aa25.7■■□□□ 1.7
COL9A3-202ENST00000452372 PDE6BP35913 854 aa25.69■■□□□ 1.7
COL9A3-202ENST00000452372 E9PSI1 815 aa25.68■■□□□ 1.7
COL9A3-202ENST00000452372 NFKBIEO00221 500 aa25.68■■□□□ 1.7
COL9A3-202ENST00000452372 VAMP4O75379 141 aa25.68■■□□□ 1.7
COL9A3-202ENST00000452372 COL11A2P13942 1736 aaPredicted RBP25.67■■□□□ 1.7
COL9A3-202ENST00000452372 ZNF622Q969S3 477 aaKnown RBP eCLIP25.67■■□□□ 1.7
COL9A3-202ENST00000452372 PDZRN3Q9UPQ7 1066 aa25.67■■□□□ 1.7
COL9A3-202ENST00000452372 LMNB1P20700 586 aa25.66■■□□□ 1.7
COL9A3-202ENST00000452372 SLFN5Q08AF3 891 aa25.66■■□□□ 1.7
COL9A3-202ENST00000452372 ANKRD13DQ6ZTN6 518 aa25.65■■□□□ 1.7
COL9A3-202ENST00000452372 NBPF5PQ86XG9 351 aaPredicted RBP25.65■■□□□ 1.7
COL9A3-202ENST00000452372 ZNF34Q8IZ26 560 aa25.65■■□□□ 1.7
COL9A3-202ENST00000452372 CNBD1Q8NA66 436 aa25.65■■□□□ 1.7
COL9A3-202ENST00000452372 PLBD2Q8NHP8 589 aa25.65■■□□□ 1.7
COL9A3-202ENST00000452372 PHAXQ9H814 394 aaKnown RBP25.65■■□□□ 1.7
COL9A3-202ENST00000452372 SRGNP10124 158 aa25.64■■□□□ 1.7
COL9A3-202ENST00000452372 TPTE2Q6XPS3 522 aa25.64■■□□□ 1.7
COL9A3-202ENST00000452372 STK31Q9BXU1 1019 aa25.64■■□□□ 1.7
COL9A3-202ENST00000452372 RRAGCQ9HB90 399 aa25.64■■□□□ 1.7
COL9A3-202ENST00000452372 SLX4Q8IY92 1834 aa25.64■■□□□ 1.7
COL9A3-202ENST00000452372 GPTP24298 496 aa25.63■■□□□ 1.69
COL9A3-202ENST00000452372 HSP90AB3PQ58FF7 597 aa25.63■■□□□ 1.69
COL9A3-202ENST00000452372 CDCA7LQ96GN5 454 aa25.63■■□□□ 1.69
COL9A3-202ENST00000452372 KDM2BQ8NHM5 1336 aa25.63■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms