RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 C3orf80F5H4A9 247 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 FOXO3O43524 673 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 PDGFRBP09619 1106 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 WEE1P30291 646 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 RAB15P59190 212 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 DNM1Q05193 864 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 PUS10Q3MIT2 529 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 CT47A1Q5JQC4 288 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 PDXDC2PQ6P474 469 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 ANKS3Q6ZW76 656 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 COMMD10Q9Y6G5 202 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 ENPP3O14638 875 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 NPHP1O15259 732 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 MZF1P28698 734 aaPredicted RBP3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 PPP2R5AQ15172 486 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 NBPF20Q3BBV1 942 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 HOMER1Q86YM7 354 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 ABTB2Q8N961 1025 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 PURBQ96QR8 312 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 PRDM10Q9NQV6 1147 aa3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 GEMIN8Q9NWZ8 242 aaKnown RBP3.04□□□□□ -1.92
CCDC88A-208ENST00000444458 SENP3-EIF4A1A0A087X0R7 540 aa3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 LCE2BO14633 110 aa3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 GPR182O15218 404 aa3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 KRT18P05783 430 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 DSC3Q14574 896 aa3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 DEPDC7Q96QD5 511 aa3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 CHMP3Q9Y3E7 222 aa3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 AK5Q9Y6K8 562 aa3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 ZRSR2Q15696 482 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 LCE2AQ5TA79 106 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 GPKOWQ92917 476 aaPredicted RBP eCLIP3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 RNPC3Q96LT9 517 aaKnown RBP3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 CCDC85AQ96PX6 553 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 PPP1R12BO60237 982 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 IGFBP4P22692 258 aa3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 NASPP49321 788 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 FBF1Q8TES7 1133 aa3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 ANAPC16Q96DE5 110 aa3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 SPON2Q9BUD6 331 aa3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 STIM2Q9P246 746 aa3.03□□□□□ -1.92
CCDC88A-208ENST00000444458 USP5P45974 858 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 LMOD3Q0VAK6 560 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 PROX2Q3B8N5 592 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 C8orf34Q49A92 452 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 PLEKHG4Q58EX7 1191 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 MKL1Q969V6 931 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 USB1Q9BQ65 265 aaKnown RBP3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 SLC27A5Q9Y2P5 690 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 TK2O00142 265 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 RIMBP2O15034 1052 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 HCLS1P14317 486 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 SH3TC2Q8TF17 1288 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 COL26A1Q96A83 441 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 ZNF408Q9H9D4 720 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 V9GY48 417 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 ERBB3P21860 1342 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 BACH1O14867 736 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 HSP90AA1P07900 732 aaKnown RBP3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 GYS2P54840 703 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 ARSHQ5FYA8 562 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 RPUSD2Q8IZ73 545 aaKnown RBP3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 NKX2-3Q8TAU0 364 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 SLC10A4Q96EP9 437 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 SNTG2Q9NY99 539 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 SEPT9Q9UHD8 586 aaPredicted RBP3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 ATAD2Q6PL18 1390 aa3.02□□□□□ -1.93
CCDC88A-208ENST00000444458 NR1I2O75469 434 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 AMPD3Q01432 767 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 PTPRNQ16849 979 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 KIAA1468Q9P260 1216 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 PCDHGA11Q9Y5H2 935 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 EID1Q9Y6B2 187 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 FZD6O60353 706 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 GJA8P48165 433 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 TAF1CQ15572 869 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 PNISRQ8TF01 805 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 NAP1L5Q96NT1 182 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 CSRNP1Q96S65 589 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 IER2Q9BTL4 223 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 SAP130Q9H0E3 1048 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 BCL2L12Q9HB09 334 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 TYW1Q9NV66 732 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 POLIQ9UNA4 740 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 EFR3BQ9Y2G0 817 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 CCDC189A1A4V9 331 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 KIF3BO15066 747 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 CAND2O75155 1236 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 PPFIA4O75335 1185 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 KIAA0825Q8IV33 1275 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 HNRNPLLQ8WVV9 542 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 SEC16BQ96JE7 1060 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 FAM129BQ96TA1 746 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 SRA1Q9HD15 236 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 CHIC2Q9UKJ5 165 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 PSDA5PKW4 1024 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 KIF4AO95239 1232 aa3.01□□□□□ -1.93
CCDC88A-208ENST00000444458 CCNYL3P0C7X3 344 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms