RNA–Protein interactions for RNA: ENST00000437951.5

PTCH1-209, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,049 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-209ENST00000437951 MATR3P43243 847 aaKnown RBP eCLIP13.24□□□□□ -0.29
PTCH1-209ENST00000437951 USP25Q9UHP3 1055 aa13.24□□□□□ -0.29
PTCH1-209ENST00000437951 FYCO1Q9BQS8 1478 aa13.24□□□□□ -0.29
PTCH1-209ENST00000437951 NECTIN2Q92692 538 aa13.23□□□□□ -0.29
PTCH1-209ENST00000437951 CCDC174Q6PII3 467 aa13.23□□□□□ -0.29
PTCH1-209ENST00000437951 STXBP4Q6ZWJ1 553 aa13.23□□□□□ -0.29
PTCH1-209ENST00000437951 RPUSD2Q8IZ73 545 aaKnown RBP13.23□□□□□ -0.29
PTCH1-209ENST00000437951 RMND1Q9NWS8 449 aa13.23□□□□□ -0.29
PTCH1-209ENST00000437951 PPP4R3AQ6IN85 833 aa13.23□□□□□ -0.29
PTCH1-209ENST00000437951 TRMT1Q9NXH9 659 aaKnown RBP13.23□□□□□ -0.29
PTCH1-209ENST00000437951 KIF21BO75037 1637 aa13.23□□□□□ -0.29
PTCH1-209ENST00000437951 STMN1P16949 149 aa13.23□□□□□ -0.29
PTCH1-209ENST00000437951 RPAP2Q8IXW5 612 aaPredicted RBP13.23□□□□□ -0.29
PTCH1-209ENST00000437951 TDRD12Q587J7 1177 aaKnown RBP13.23□□□□□ -0.29
PTCH1-209ENST00000437951 C10orf67Q8IYJ2 551 aa13.23□□□□□ -0.29
PTCH1-209ENST00000437951 LMBR1Q8WVP7 490 aa13.23□□□□□ -0.29
PTCH1-209ENST00000437951 CNNM3Q8NE01 707 aa13.23□□□□□ -0.29
PTCH1-209ENST00000437951 ERCC6LQ2NKX8 1250 aa13.22□□□□□ -0.29
PTCH1-209ENST00000437951 TWISTNBQ3B726 338 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-209ENST00000437951 PHLDB2Q86SQ0 1253 aa13.22□□□□□ -0.29
PTCH1-209ENST00000437951 CPLX4Q7Z7G2 160 aa13.22□□□□□ -0.29
PTCH1-209ENST00000437951 TTC21AQ8NDW8 1320 aa13.22□□□□□ -0.29
PTCH1-209ENST00000437951 TERF1P54274 439 aa13.22□□□□□ -0.29
PTCH1-209ENST00000437951 ZBTB16Q05516 673 aa13.22□□□□□ -0.29
PTCH1-209ENST00000437951 SEC63Q9UGP8 760 aaKnown RBP13.22□□□□□ -0.29
PTCH1-209ENST00000437951 TNPO1Q92973 898 aaKnown RBP13.22□□□□□ -0.29
PTCH1-209ENST00000437951 TSGA10Q9BZW7 698 aa13.22□□□□□ -0.29
PTCH1-209ENST00000437951 ZKSCAN5Q9Y2L8 839 aa13.21□□□□□ -0.29
PTCH1-209ENST00000437951 ZSCAN16Q9H4T2 348 aaPredicted RBP13.21□□□□□ -0.29
PTCH1-209ENST00000437951 CLNS1AP54105 237 aaKnown RBP13.21□□□□□ -0.29
PTCH1-209ENST00000437951 NBPF8Q3BBV2 869 aa13.21□□□□□ -0.29
PTCH1-209ENST00000437951 CROCCP2Q86T23 111 aa13.21□□□□□ -0.29
PTCH1-209ENST00000437951 KIAA1524Q8TCG1 905 aa13.21□□□□□ -0.29
PTCH1-209ENST00000437951 AKAP2Q9Y2D5 859 aa13.21□□□□□ -0.29
PTCH1-209ENST00000437951 SSX2IPQ9Y2D8 614 aa13.21□□□□□ -0.29
PTCH1-209ENST00000437951 A0A087WZG4 1122 aa13.21□□□□□ -0.3
PTCH1-209ENST00000437951 MYOM3Q5VTT5 1437 aa13.21□□□□□ -0.3
PTCH1-209ENST00000437951 SSBP05455 408 aaKnown RBP eCLIP13.21□□□□□ -0.3
PTCH1-209ENST00000437951 TPD52P55327 224 aaPredicted RBP13.21□□□□□ -0.3
PTCH1-209ENST00000437951 KRT83P78385 493 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 C8orf76Q96K31 380 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 ZNF76P36508 570 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 RAPGEF4Q8WZA2 1011 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 ARHGAP24Q8N264 748 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 PIBF1Q8WXW3 757 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 FERMT2Q96AC1 680 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 MYCBPQ99417 103 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-209ENST00000437951 ZNF165P49910 485 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 SPAG1Q07617 926 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 TMEM87AQ8NBN3 555 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 LIMCH1Q9UPQ0 1083 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 CECR2Q9BXF3 1484 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 BUB1BO60566 1050 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-209ENST00000437951 GIGYF1O75420 1035 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-209ENST00000437951 GBP7Q8N8V2 638 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-209ENST00000437951 ERICH3Q5RHP9 1530 aa13.2□□□□□ -0.3
PTCH1-209ENST00000437951 MCM6Q14566 821 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 TBC1D5Q92609 795 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 ATP2A2P16615 1042 aaKnown RBP13.19□□□□□ -0.3
PTCH1-209ENST00000437951 ZSCAN23Q3MJ62 389 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 VPS18Q9P253 973 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 ADAMTS8Q9UP79 889 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 SMARCA4P51532 1647 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 ZNF365Q70YC5 407 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.19□□□□□ -0.3
PTCH1-209ENST00000437951 PCK1P35558 622 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 MTIF2P46199 727 aaKnown RBP13.19□□□□□ -0.3
PTCH1-209ENST00000437951 MRVI1Q9Y6F6 885 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 WIZO95785 1651 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 GMNNO75496 209 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 VAV2P52735 878 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 KLHL10Q6JEL2 608 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 SPATS2Q86XZ4 545 aaKnown RBP13.19□□□□□ -0.3
PTCH1-209ENST00000437951 CNNM1Q9NRU3 951 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 WHAMMP3Q1A5X7 153 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 NUTM2DQ5VT03 806 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-209ENST00000437951 TCP11L2Q8N4U5 519 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 MAP7Q14244 749 aa13.19□□□□□ -0.3
PTCH1-209ENST00000437951 EHMT1Q9H9B1 1298 aa13.18□□□□□ -0.3
PTCH1-209ENST00000437951 COMMD10Q9Y6G5 202 aa13.18□□□□□ -0.3
PTCH1-209ENST00000437951 HNRNPMP52272 730 aaKnown RBP eCLIP13.18□□□□□ -0.3
PTCH1-209ENST00000437951 IRX4P78413 519 aa13.18□□□□□ -0.3
PTCH1-209ENST00000437951 TRPC3Q13507 836 aa13.18□□□□□ -0.3
PTCH1-209ENST00000437951 KDM4AO75164 1064 aa13.18□□□□□ -0.3
PTCH1-209ENST00000437951 MAP2K2P36507 400 aa13.18□□□□□ -0.3
PTCH1-209ENST00000437951 NOP2P46087 812 aaKnown RBP13.18□□□□□ -0.3
PTCH1-209ENST00000437951 KRBA2Q6ZNG9 492 aa13.18□□□□□ -0.3
PTCH1-209ENST00000437951 KRT86O43790 486 aa13.17□□□□□ -0.3
PTCH1-209ENST00000437951 BMP15O95972 392 aa13.17□□□□□ -0.3
PTCH1-209ENST00000437951 CNGA1P29973 690 aa13.17□□□□□ -0.3
PTCH1-209ENST00000437951 INTS8Q75QN2 995 aaKnown RBP13.17□□□□□ -0.3
PTCH1-209ENST00000437951 GLRX3O76003 335 aaKnown RBP13.17□□□□□ -0.3
PTCH1-209ENST00000437951 AFAP1L1Q8TED9 768 aa13.17□□□□□ -0.3
PTCH1-209ENST00000437951 MTMR7Q9Y216 660 aa13.17□□□□□ -0.3
PTCH1-209ENST00000437951 PPFIA2O75334 1257 aa13.17□□□□□ -0.3
PTCH1-209ENST00000437951 LUC7L3O95232 432 aaKnown RBP13.17□□□□□ -0.3
PTCH1-209ENST00000437951 KIF5AQ12840 1032 aa13.17□□□□□ -0.3
PTCH1-209ENST00000437951 CWC27Q6UX04 472 aaKnown RBP13.17□□□□□ -0.3
PTCH1-209ENST00000437951 FSIP1Q8NA03 581 aa13.17□□□□□ -0.3
PTCH1-209ENST00000437951 MTRF1LQ9UGC7 380 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms