RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 CASQ1P31415 396 aa12.89□□□□□ -0.35
SCN4A-201ENST00000435607 MTIF2P46199 727 aaKnown RBP12.89□□□□□ -0.35
SCN4A-201ENST00000435607 MAP3K11Q16584 847 aa12.89□□□□□ -0.35
SCN4A-201ENST00000435607 MSANTD4Q8NCY6 345 aa12.88□□□□□ -0.35
SCN4A-201ENST00000435607 ANO10Q9NW15 660 aa12.88□□□□□ -0.35
SCN4A-201ENST00000435607 IFIT3O14879 490 aaKnown RBP12.88□□□□□ -0.35
SCN4A-201ENST00000435607 WDR63Q8IWG1 891 aa12.88□□□□□ -0.35
SCN4A-201ENST00000435607 NUP88Q99567 741 aaPredicted RBP12.88□□□□□ -0.35
SCN4A-201ENST00000435607 K7ELQ4 463 aaPredicted RBP12.88□□□□□ -0.35
SCN4A-201ENST00000435607 BCCIPQ9P287 314 aaKnown RBP eCLIP12.88□□□□□ -0.35
SCN4A-201ENST00000435607 TMCO5BA8MYB1 307 aa12.88□□□□□ -0.35
SCN4A-201ENST00000435607 CASTP20810 708 aaKnown RBP12.88□□□□□ -0.35
SCN4A-201ENST00000435607 SPECC1LQ69YQ0 1117 aa12.88□□□□□ -0.35
SCN4A-201ENST00000435607 GAS8O95995 478 aa12.88□□□□□ -0.35
SCN4A-201ENST00000435607 XPCQ01831 940 aaPredicted RBP12.88□□□□□ -0.35
SCN4A-201ENST00000435607 RPGRIP1LQ68CZ1 1315 aa12.87□□□□□ -0.35
SCN4A-201ENST00000435607 PRKCSHP14314 528 aaPredicted RBP12.87□□□□□ -0.35
SCN4A-201ENST00000435607 SFPQP23246 707 aaKnown RBP eCLIP12.87□□□□□ -0.35
SCN4A-201ENST00000435607 DHX37Q8IY37 1157 aaKnown RBP12.87□□□□□ -0.35
SCN4A-201ENST00000435607 IQCGQ9H095 443 aaKnown RBP12.87□□□□□ -0.35
SCN4A-201ENST00000435607 TSPY2A6NKD2 308 aa12.87□□□□□ -0.35
SCN4A-201ENST00000435607 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.87□□□□□ -0.35
SCN4A-201ENST00000435607 TNNT1P13805 278 aa12.87□□□□□ -0.35
SCN4A-201ENST00000435607 TIGD1Q96MW7 591 aa12.87□□□□□ -0.35
SCN4A-201ENST00000435607 UQCRHLA0A096LP55 91 aa12.87□□□□□ -0.35
SCN4A-201ENST00000435607 LPXNO60711 386 aa12.87□□□□□ -0.35
SCN4A-201ENST00000435607 HYPKQ9NX55 129 aa12.87□□□□□ -0.35
SCN4A-201ENST00000435607 CFAP70Q5T0N1 1121 aa12.87□□□□□ -0.35
SCN4A-201ENST00000435607 FILIP1Q7Z7B0 1213 aa12.87□□□□□ -0.35
SCN4A-201ENST00000435607 CRNKL1Q9BZJ0 848 aaKnown RBP12.87□□□□□ -0.35
SCN4A-201ENST00000435607 KANK3Q6NY19 840 aa12.86□□□□□ -0.35
SCN4A-201ENST00000435607 CTAGE5O15320 804 aa12.86□□□□□ -0.35
SCN4A-201ENST00000435607 RPAP2Q8IXW5 612 aaPredicted RBP12.86□□□□□ -0.35
SCN4A-201ENST00000435607 MYD88Q99836 296 aa12.86□□□□□ -0.35
SCN4A-201ENST00000435607 HMGB1P1B2RPK0 211 aaPredicted RBP12.86□□□□□ -0.35
SCN4A-201ENST00000435607 BRDTQ58F21 947 aaPredicted RBP12.86□□□□□ -0.35
SCN4A-201ENST00000435607 PDZRN3Q9UPQ7 1066 aa12.86□□□□□ -0.35
SCN4A-201ENST00000435607 TOP1P11387 765 aaKnown RBP12.86□□□□□ -0.35
SCN4A-201ENST00000435607 KRT13P13646 458 aa12.86□□□□□ -0.35
SCN4A-201ENST00000435607 PRPF4BQ13523 1007 aaKnown RBP12.86□□□□□ -0.35
SCN4A-201ENST00000435607 KIF4BQ2VIQ3 1234 aa12.86□□□□□ -0.35
SCN4A-201ENST00000435607 BCAR3O75815 825 aa12.86□□□□□ -0.35
SCN4A-201ENST00000435607 UQCRHP07919 91 aa12.86□□□□□ -0.35
SCN4A-201ENST00000435607 UBA7P41226 1012 aa12.86□□□□□ -0.35
SCN4A-201ENST00000435607 HLTFQ14527 1009 aaKnown RBP eCLIP12.86□□□□□ -0.35
SCN4A-201ENST00000435607 JDP2Q8WYK2 163 aa12.86□□□□□ -0.35
SCN4A-201ENST00000435607 DDX11Q96FC9 970 aa12.86□□□□□ -0.35
SCN4A-201ENST00000435607 PRPHP41219 470 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 NFE2L2Q16236 605 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 MVPQ14764 893 aaKnown RBP12.85□□□□□ -0.35
SCN4A-201ENST00000435607 TOM1O60784 492 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 CEP83Q9Y592 693 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 TRMT1LQ7Z2T5 733 aaKnown RBP12.85□□□□□ -0.35
SCN4A-201ENST00000435607 CLIP2Q9UDT6 1046 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 ANKRD30BQ9BXX2 1392 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 HFM1A2PYH4 1435 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 GOLGA8AA7E2F4 631 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 GOLGA8BA8MQT2 603 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 MAP7D1Q3KQU3 841 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 CNNM3Q8NE01 707 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 ADAMTS8Q9UP79 889 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 PLS1Q14651 629 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 FAM107BQ9H098 131 aa12.85□□□□□ -0.35
SCN4A-201ENST00000435607 KIAA0753Q2KHM9 967 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 PDCL2Q8N4E4 241 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 TSHZ2Q9NRE2 1034 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 NBPF7P0C2Y1 421 aaPredicted RBP12.84□□□□□ -0.35
SCN4A-201ENST00000435607 NBPF6Q5VWK0 638 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 NBPF5PQ86XG9 351 aaPredicted RBP12.84□□□□□ -0.35
SCN4A-201ENST00000435607 NBPF4Q96M43 638 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 SCAND2PQ9GZW5 306 aaPredicted RBP12.84□□□□□ -0.35
SCN4A-201ENST00000435607 VAT1LQ9HCJ6 419 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 A0A1W2PRG0 241 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 GOLIM4O00461 696 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 FCHSD2O94868 740 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 IDEP14735 1019 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 CHD1LQ86WJ1 897 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 CCDC155Q8N6L0 562 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 SH2B1Q9NRF2 756 aaPredicted RBP12.84□□□□□ -0.35
SCN4A-201ENST00000435607 CCDC61Q9Y6R9 512 aa12.84□□□□□ -0.35
SCN4A-201ENST00000435607 CCDC152Q4G0S7 254 aa12.83□□□□□ -0.35
SCN4A-201ENST00000435607 NOD1Q9Y239 953 aa12.83□□□□□ -0.35
SCN4A-201ENST00000435607 TAF7Q15545 349 aaPredicted RBP12.83□□□□□ -0.36
SCN4A-201ENST00000435607 TCHPQ9BT92 498 aa12.83□□□□□ -0.36
SCN4A-201ENST00000435607 HAUS2Q9NVX0 235 aa12.83□□□□□ -0.36
SCN4A-201ENST00000435607 ANAPC4Q9UJX5 808 aa12.83□□□□□ -0.36
SCN4A-201ENST00000435607 ATP2A1O14983 1001 aa12.83□□□□□ -0.36
SCN4A-201ENST00000435607 POTEB2H3BUK9 544 aa12.83□□□□□ -0.36
SCN4A-201ENST00000435607 PPP2R1AP30153 589 aa12.83□□□□□ -0.36
SCN4A-201ENST00000435607 TNNI2P48788 182 aa12.83□□□□□ -0.36
SCN4A-201ENST00000435607 AFAP1Q8N556 730 aa12.83□□□□□ -0.36
SCN4A-201ENST00000435607 CKAP4Q07065 602 aaKnown RBP12.83□□□□□ -0.36
SCN4A-201ENST00000435607 MROH2BQ7Z745 1585 aa12.83□□□□□ -0.36
SCN4A-201ENST00000435607 IL1RAPL2Q9NP60 686 aa12.83□□□□□ -0.36
SCN4A-201ENST00000435607 DAPK1P53355 1430 aa12.82□□□□□ -0.36
SCN4A-201ENST00000435607 GMNNO75496 209 aa12.82□□□□□ -0.36
SCN4A-201ENST00000435607 C6orf50Q9HD87 102 aa12.82□□□□□ -0.36
SCN4A-201ENST00000435607 TXNDC16Q9P2K2 825 aa12.82□□□□□ -0.36
SCN4A-201ENST00000435607 SETDB2Q96T68 719 aa12.82□□□□□ -0.36
SCN4A-201ENST00000435607 RMND1Q9NWS8 449 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms