RNA–Protein interactions for RNA: ENST00000435201.5

LIMK1-203, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-203ENST00000435201 FOXD4L1Q9NU39 408 aa20.39■□□□□ 0.85
LIMK1-203ENST00000435201 COL5A2P05997 1499 aaPredicted RBP20.38■□□□□ 0.85
LIMK1-203ENST00000435201 IL27Q8NEV9 243 aa20.38■□□□□ 0.85
LIMK1-203ENST00000435201 IL17RAQ96F46 866 aa20.38■□□□□ 0.85
LIMK1-203ENST00000435201 SUCLG2Q96I99 432 aa20.38■□□□□ 0.85
LIMK1-203ENST00000435201 METTL22Q9BUU2 404 aaPredicted RBP20.38■□□□□ 0.85
LIMK1-203ENST00000435201 NEURL1BA8MQ27 555 aa20.37■□□□□ 0.85
LIMK1-203ENST00000435201 GLRX3O76003 335 aaKnown RBP20.37■□□□□ 0.85
LIMK1-203ENST00000435201 IGKV5-2P06315 115 aa20.37■□□□□ 0.85
LIMK1-203ENST00000435201 COPS6Q7L5N1 327 aa20.37■□□□□ 0.85
LIMK1-203ENST00000435201 GPATCH3Q96I76 525 aa20.37■□□□□ 0.85
LIMK1-203ENST00000435201 MCM2P49736 904 aa20.37■□□□□ 0.85
LIMK1-203ENST00000435201 TOM1L2Q6ZVM7 507 aa20.37■□□□□ 0.85
LIMK1-203ENST00000435201 CWC22Q9HCG8 908 aaKnown RBP20.37■□□□□ 0.85
LIMK1-203ENST00000435201 TRAK2O60296 914 aa20.36■□□□□ 0.85
LIMK1-203ENST00000435201 LRP10Q7Z4F1 713 aa20.36■□□□□ 0.85
LIMK1-203ENST00000435201 KAZALD1Q96I82 304 aa20.36■□□□□ 0.85
LIMK1-203ENST00000435201 BICC1Q9H694 974 aaKnown RBP20.36■□□□□ 0.85
LIMK1-203ENST00000435201 ARFGEF2Q9Y6D5 1785 aa20.36■□□□□ 0.85
LIMK1-203ENST00000435201 UBR2Q8IWV8 1755 aa20.35■□□□□ 0.85
LIMK1-203ENST00000435201 GCKRQ14397 625 aa20.35■□□□□ 0.85
LIMK1-203ENST00000435201 ANKRD13DQ6ZTN6 518 aa20.35■□□□□ 0.85
LIMK1-203ENST00000435201 ZCRB1Q8TBF4 217 aaKnown RBP20.35■□□□□ 0.85
LIMK1-203ENST00000435201 USP16Q9Y5T5 823 aa20.35■□□□□ 0.85
LIMK1-203ENST00000435201 AFDNP55196 1824 aaKnown RBP20.35■□□□□ 0.85
LIMK1-203ENST00000435201 ERBB4Q15303 1308 aa20.35■□□□□ 0.85
LIMK1-203ENST00000435201 NHSL1Q5SYE7 1610 aa20.35■□□□□ 0.85
LIMK1-203ENST00000435201 NUCB2P80303 420 aa20.35■□□□□ 0.85
LIMK1-203ENST00000435201 MYD88Q99836 296 aa20.35■□□□□ 0.85
LIMK1-203ENST00000435201 ZNF335Q9H4Z2 1342 aaPredicted RBP20.34■□□□□ 0.85
LIMK1-203ENST00000435201 CLEC17AQ6ZS10 378 aa20.34■□□□□ 0.85
LIMK1-203ENST00000435201 ECHDC1Q9NTX5 307 aa20.34■□□□□ 0.85
LIMK1-203ENST00000435201 PAPPAQ13219 1627 aa20.34■□□□□ 0.85
LIMK1-203ENST00000435201 ERVV-2B6SEH9 535 aa20.33■□□□□ 0.85
LIMK1-203ENST00000435201 IFIT2P09913 472 aaKnown RBP20.33■□□□□ 0.85
LIMK1-203ENST00000435201 G3BP1Q13283 466 aaKnown RBP eCLIP20.33■□□□□ 0.85
LIMK1-203ENST00000435201 PA2G4Q9UQ80 394 aaKnown RBP20.33■□□□□ 0.85
LIMK1-203ENST00000435201 COL15A1P39059 1388 aa20.33■□□□□ 0.84
LIMK1-203ENST00000435201 SGSM2O43147 1006 aa20.33■□□□□ 0.84
LIMK1-203ENST00000435201 CARD10Q9BWT7 1032 aa20.33■□□□□ 0.84
LIMK1-203ENST00000435201 MAP4K4O95819 1239 aaPredicted RBP20.32■□□□□ 0.84
LIMK1-203ENST00000435201 NEK4P51957 841 aa20.32■□□□□ 0.84
LIMK1-203ENST00000435201 SHANK3Q9BYB0 1731 aa20.32■□□□□ 0.84
LIMK1-203ENST00000435201 IL2RBP14784 551 aa20.31■□□□□ 0.84
LIMK1-203ENST00000435201 NKX1-1Q15270 411 aaPredicted RBP20.31■□□□□ 0.84
LIMK1-203ENST00000435201 L1TD1Q5T7N2 865 aaKnown RBP20.31■□□□□ 0.84
LIMK1-203ENST00000435201 PALD1Q9ULE6 856 aa20.31■□□□□ 0.84
LIMK1-203ENST00000435201 SSFA2P28290 1259 aa20.3■□□□□ 0.84
LIMK1-203ENST00000435201 HSPA4P34932 840 aa20.3■□□□□ 0.84
LIMK1-203ENST00000435201 SKOR2Q2VWA4 1001 aaPredicted RBP20.3■□□□□ 0.84
LIMK1-203ENST00000435201 RAD50Q92878 1312 aa20.3■□□□□ 0.84
LIMK1-203ENST00000435201 KDM4FA0A1W2PPD8 638 aa20.3■□□□□ 0.84
LIMK1-203ENST00000435201 GOLGA6L22H0YM25 854 aa20.3■□□□□ 0.84
LIMK1-203ENST00000435201 AACSQ86V21 672 aa20.3■□□□□ 0.84
LIMK1-203ENST00000435201 PLBD2Q8NHP8 589 aa20.29■□□□□ 0.84
LIMK1-203ENST00000435201 RUFY2Q8WXA3 655 aa20.29■□□□□ 0.84
LIMK1-203ENST00000435201 KCPQ6ZWJ8 1503 aa20.29■□□□□ 0.84
LIMK1-203ENST00000435201 SASH1O94885 1247 aa20.28■□□□□ 0.84
LIMK1-203ENST00000435201 IL25Q9H293 177 aa20.28■□□□□ 0.84
LIMK1-203ENST00000435201 CYP2E1P05181 493 aaPredicted RBP20.28■□□□□ 0.84
LIMK1-203ENST00000435201 EVI5LQ96CN4 794 aa20.28■□□□□ 0.84
LIMK1-203ENST00000435201 DIAPH3Q9NSV4 1193 aa20.28■□□□□ 0.84
LIMK1-203ENST00000435201 KIAA1211Q6ZU35 1233 aa20.27■□□□□ 0.84
LIMK1-203ENST00000435201 NUP188Q5SRE5 1749 aa20.27■□□□□ 0.83
LIMK1-203ENST00000435201 TMX3Q96JJ7 454 aa20.26■□□□□ 0.83
LIMK1-203ENST00000435201 LSG1Q9H089 658 aaKnown RBP20.26■□□□□ 0.83
LIMK1-203ENST00000435201 COPRSQ9NQ92 184 aa20.26■□□□□ 0.83
LIMK1-203ENST00000435201 PIP4K2AP48426 406 aaPredicted RBP20.26■□□□□ 0.83
LIMK1-203ENST00000435201 RABL6Q3YEC7 729 aaPredicted RBP20.26■□□□□ 0.83
LIMK1-203ENST00000435201 TNS2Q63HR2 1409 aa20.25■□□□□ 0.83
LIMK1-203ENST00000435201 HIP1O00291 1037 aa20.25■□□□□ 0.83
LIMK1-203ENST00000435201 BAG4O95429 457 aaKnown RBP20.25■□□□□ 0.83
LIMK1-203ENST00000435201 CUL4AQ13619 759 aa20.25■□□□□ 0.83
LIMK1-203ENST00000435201 EPHA10Q5JZY3 1008 aa20.25■□□□□ 0.83
LIMK1-203ENST00000435201 EAF2Q96CJ1 260 aaPredicted RBP20.25■□□□□ 0.83
LIMK1-203ENST00000435201 EVA1CP58658 441 aa20.24■□□□□ 0.83
LIMK1-203ENST00000435201 CWC27Q6UX04 472 aaKnown RBP20.24■□□□□ 0.83
LIMK1-203ENST00000435201 ZGPATQ8N5A5 531 aaKnown RBP20.24■□□□□ 0.83
LIMK1-203ENST00000435201 GOLGA6L3A6NEY3 463 aa20.24■□□□□ 0.83
LIMK1-203ENST00000435201 INTS4Q96HW7 963 aaKnown RBP20.24■□□□□ 0.83
LIMK1-203ENST00000435201 GZF1Q9H116 711 aaPredicted RBP20.24■□□□□ 0.83
LIMK1-203ENST00000435201 FSD2A1L4K1 749 aa20.23■□□□□ 0.83
LIMK1-203ENST00000435201 UBE3BQ7Z3V4 1068 aa20.23■□□□□ 0.83
LIMK1-203ENST00000435201 SIL1Q9H173 461 aa20.23■□□□□ 0.83
LIMK1-203ENST00000435201 STRN4Q9NRL3 753 aa20.23■□□□□ 0.83
LIMK1-203ENST00000435201 ISY1Q9ULR0 285 aaKnown RBP20.23■□□□□ 0.83
LIMK1-203ENST00000435201 A0A087WZG4 1122 aa20.22■□□□□ 0.83
LIMK1-203ENST00000435201 NBPF26B4DH59 902 aa20.22■□□□□ 0.83
LIMK1-203ENST00000435201 NBPF14Q5TI25 921 aa20.22■□□□□ 0.83
LIMK1-203ENST00000435201 NBPF10Q6P3W6 841 aaKnown RBP20.22■□□□□ 0.83
LIMK1-203ENST00000435201 NBPF15Q8N660 670 aa20.22■□□□□ 0.83
LIMK1-203ENST00000435201 TOGARAM1Q9Y4F4 1720 aa20.22■□□□□ 0.83
LIMK1-203ENST00000435201 RFX5P48382 616 aaPredicted RBP20.22■□□□□ 0.83
LIMK1-203ENST00000435201 CCDC8Q9H0W5 538 aaPredicted RBP20.22■□□□□ 0.83
LIMK1-203ENST00000435201 CASP7P55210 303 aa20.21■□□□□ 0.83
LIMK1-203ENST00000435201 DDX54Q8TDD1 881 aaKnown RBP20.21■□□□□ 0.83
LIMK1-203ENST00000435201 SNX14Q9Y5W7 946 aa20.21■□□□□ 0.83
LIMK1-203ENST00000435201 ATP5J2-PTCD1G3V325 749 aa20.2■□□□□ 0.82
LIMK1-203ENST00000435201 PTCD1O75127 700 aaKnown RBP20.2■□□□□ 0.82
LIMK1-203ENST00000435201 KLHDC4Q8TBB5 520 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms