RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 WFS1O76024 890 aa10.68□□□□□ -0.7
CCDC88A-206ENST00000430086 COX20Q5RI15 118 aa10.68□□□□□ -0.7
CCDC88A-206ENST00000430086 C16orf46Q6P387 395 aa10.68□□□□□ -0.7
CCDC88A-206ENST00000430086 FOXR1Q6PIV2 292 aa10.68□□□□□ -0.7
CCDC88A-206ENST00000430086 TREML4Q6UXN2 200 aa10.68□□□□□ -0.7
CCDC88A-206ENST00000430086 GTPBP3Q969Y2 492 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-206ENST00000430086 KLRG1Q96E93 195 aa10.68□□□□□ -0.7
CCDC88A-206ENST00000430086 SUSD3Q96L08 255 aa10.68□□□□□ -0.7
CCDC88A-206ENST00000430086 ZCCHC2Q9C0B9 1178 aaKnown RBP10.68□□□□□ -0.7
CCDC88A-206ENST00000430086 NEUROD4Q9HD90 331 aa10.68□□□□□ -0.7
CCDC88A-206ENST00000430086 LRFN2Q9ULH4 789 aa10.68□□□□□ -0.7
CCDC88A-206ENST00000430086 GJA3Q9Y6H8 435 aa10.68□□□□□ -0.7
CCDC88A-206ENST00000430086 BRD1O95696 1058 aa10.67□□□□□ -0.7
CCDC88A-206ENST00000430086 LRRC69Q6ZNQ3 347 aa10.67□□□□□ -0.7
CCDC88A-206ENST00000430086 GPR161Q8N6U8 529 aaKnown RBP10.67□□□□□ -0.7
CCDC88A-206ENST00000430086 NDFIP2Q9NV92 336 aa10.67□□□□□ -0.7
CCDC88A-206ENST00000430086 SEPT3Q9UH03 358 aa10.67□□□□□ -0.7
CCDC88A-206ENST00000430086 PCDHGC4Q9Y5F7 938 aa10.67□□□□□ -0.7
CCDC88A-206ENST00000430086 SCNN1AP37088 669 aa10.66□□□□□ -0.7
CCDC88A-206ENST00000430086 NAA30Q147X3 362 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-206ENST00000430086 C11orf91Q3C1V1 193 aa10.66□□□□□ -0.7
CCDC88A-206ENST00000430086 LCE2AQ5TA79 106 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-206ENST00000430086 IER5Q5VY09 327 aa10.66□□□□□ -0.7
CCDC88A-206ENST00000430086 TRERF1Q96PN7 1200 aa10.66□□□□□ -0.7
CCDC88A-206ENST00000430086 CFHR5Q9BXR6 569 aa10.66□□□□□ -0.7
CCDC88A-206ENST00000430086 SAP130Q9H0E3 1048 aa10.66□□□□□ -0.7
CCDC88A-206ENST00000430086 MTMR7Q9Y216 660 aa10.66□□□□□ -0.7
CCDC88A-206ENST00000430086 ATXN7O15265 892 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-206ENST00000430086 ARID4AP29374 1257 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-206ENST00000430086 DGKZQ13574 1117 aa10.65□□□□□ -0.7
CCDC88A-206ENST00000430086 LCE2CQ5TA81 110 aa10.65□□□□□ -0.7
CCDC88A-206ENST00000430086 ZNF280CQ8ND82 737 aa10.65□□□□□ -0.7
CCDC88A-206ENST00000430086 HSH2DQ96JZ2 352 aa10.65□□□□□ -0.7
CCDC88A-206ENST00000430086 BCS1LQ9Y276 419 aa10.65□□□□□ -0.7
CCDC88A-206ENST00000430086 TGFBR3LH3BV60 316 aa10.64□□□□□ -0.71
CCDC88A-206ENST00000430086 FAM157BP0CG42 384 aa10.64□□□□□ -0.71
CCDC88A-206ENST00000430086 KLK14Q9P0G3 267 aa10.64□□□□□ -0.71
CCDC88A-206ENST00000430086 ATXN7L1Q9ULK2 861 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-206ENST00000430086 PHF24Q9UPV7 400 aa10.64□□□□□ -0.71
CCDC88A-206ENST00000430086 BNIP3LO60238 219 aa10.63□□□□□ -0.71
CCDC88A-206ENST00000430086 PDIA4P13667 645 aaKnown RBP10.63□□□□□ -0.71
CCDC88A-206ENST00000430086 GPR25O00155 361 aa10.62□□□□□ -0.71
CCDC88A-206ENST00000430086 TNFRSF10BO14763 440 aa10.62□□□□□ -0.71
CCDC88A-206ENST00000430086 TNP2Q05952 138 aa10.62□□□□□ -0.71
CCDC88A-206ENST00000430086 TXNDC2Q86VQ3 553 aa10.62□□□□□ -0.71
CCDC88A-206ENST00000430086 DMGDHQ9UI17 866 aaKnown RBP10.62□□□□□ -0.71
CCDC88A-206ENST00000430086 EFSO43281 561 aa10.61□□□□□ -0.71
CCDC88A-206ENST00000430086 BRD2P25440 801 aaKnown RBP10.61□□□□□ -0.71
CCDC88A-206ENST00000430086 GAS6Q14393 721 aa10.61□□□□□ -0.71
CCDC88A-206ENST00000430086 BTLAQ7Z6A9 289 aa10.61□□□□□ -0.71
CCDC88A-206ENST00000430086 HELQQ8TDG4 1101 aa10.61□□□□□ -0.71
CCDC88A-206ENST00000430086 GTF3C2Q8WUA4 911 aaPredicted RBP10.61□□□□□ -0.71
CCDC88A-206ENST00000430086 IFT43Q96FT9 208 aa10.61□□□□□ -0.71
CCDC88A-206ENST00000430086 MAPTP10636 758 aaKnown RBP10.6□□□□□ -0.71
CCDC88A-206ENST00000430086 TYRO3Q06418 890 aa10.6□□□□□ -0.71
CCDC88A-206ENST00000430086 LAMC2Q13753 1193 aa10.6□□□□□ -0.71
CCDC88A-206ENST00000430086 ABHD17AQ96GS6 310 aa10.6□□□□□ -0.71
CCDC88A-206ENST00000430086 COL25A1Q9BXS0 654 aaPredicted RBP10.6□□□□□ -0.71
CCDC88A-206ENST00000430086 STIM2Q9P246 746 aa10.6□□□□□ -0.71
CCDC88A-206ENST00000430086 KHNYNO15037 678 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-206ENST00000430086 HOMEZQ8IX15 550 aa10.59□□□□□ -0.71
CCDC88A-206ENST00000430086 EGFL7Q9UHF1 273 aa10.59□□□□□ -0.71
CCDC88A-206ENST00000430086 GNEQ9Y223 722 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-206ENST00000430086 DNMT3AQ9Y6K1 912 aaPredicted RBP10.59□□□□□ -0.71
CCDC88A-206ENST00000430086 DCDC2BA2VCK2 349 aa10.58□□□□□ -0.72
CCDC88A-206ENST00000430086 MICAL2O94851 1124 aa10.58□□□□□ -0.72
CCDC88A-206ENST00000430086 GMPRP36959 345 aa10.58□□□□□ -0.72
CCDC88A-206ENST00000430086 KCNQ4P56696 695 aa10.58□□□□□ -0.72
CCDC88A-206ENST00000430086 RNFT1Q5M7Z0 435 aa10.58□□□□□ -0.72
CCDC88A-206ENST00000430086 CCER1Q8TC90 406 aaPredicted RBP10.58□□□□□ -0.72
CCDC88A-206ENST00000430086 CEP63Q96MT8 703 aa10.58□□□□□ -0.72
CCDC88A-206ENST00000430086 HCN2Q9UL51 889 aa10.58□□□□□ -0.72
CCDC88A-206ENST00000430086 FGFR3P22607 806 aa10.57□□□□□ -0.72
CCDC88A-206ENST00000430086 KRT76Q01546 638 aa10.57□□□□□ -0.72
CCDC88A-206ENST00000430086 KCNA1Q09470 495 aa10.57□□□□□ -0.72
CCDC88A-206ENST00000430086 FAM182BQ5T319 152 aa10.57□□□□□ -0.72
CCDC88A-206ENST00000430086 ETFBKMTQ8IXQ9 262 aa10.57□□□□□ -0.72
CCDC88A-206ENST00000430086 BRD7Q9NPI1 651 aa10.57□□□□□ -0.72
CCDC88A-206ENST00000430086 NPR3P17342 541 aa10.56□□□□□ -0.72
CCDC88A-206ENST00000430086 IDH3AP50213 366 aa10.56□□□□□ -0.72
CCDC88A-206ENST00000430086 SF3B2Q13435 895 aaKnown RBP10.56□□□□□ -0.72
CCDC88A-206ENST00000430086 TREML1Q86YW5 311 aa10.56□□□□□ -0.72
CCDC88A-206ENST00000430086 ABTB2Q8N961 1025 aa10.56□□□□□ -0.72
CCDC88A-206ENST00000430086 MBIPQ9NS73 344 aa10.56□□□□□ -0.72
CCDC88A-206ENST00000430086 MX2P20592 715 aa10.55□□□□□ -0.72
CCDC88A-206ENST00000430086 INPP5BP32019 993 aa10.55□□□□□ -0.72
CCDC88A-206ENST00000430086 FKBP4Q02790 459 aaKnown RBP eCLIP10.55□□□□□ -0.72
CCDC88A-206ENST00000430086 FAM26DQ5JW98 314 aa10.55□□□□□ -0.72
CCDC88A-206ENST00000430086 MARK1Q9P0L2 795 aa10.55□□□□□ -0.72
CCDC88A-206ENST00000430086 PATL2C9JE40 543 aaKnown RBP10.54□□□□□ -0.72
CCDC88A-206ENST00000430086 OPLAHO14841 1288 aa10.54□□□□□ -0.72
CCDC88A-206ENST00000430086 WIPF1O43516 503 aa10.54□□□□□ -0.72
CCDC88A-206ENST00000430086 ABL1P00519 1130 aa10.54□□□□□ -0.72
CCDC88A-206ENST00000430086 SERPINB4P48594 390 aa10.54□□□□□ -0.72
CCDC88A-206ENST00000430086 ARSDP51689 593 aa10.54□□□□□ -0.72
CCDC88A-206ENST00000430086 CTBSQ01459 385 aa10.54□□□□□ -0.72
CCDC88A-206ENST00000430086 SFSWAPQ12872 951 aaKnown RBP10.54□□□□□ -0.72
CCDC88A-206ENST00000430086 CNTNAP3BQ96NU0 1288 aa10.54□□□□□ -0.72
CCDC88A-206ENST00000430086 CNTNAP3Q9BZ76 1288 aa10.54□□□□□ -0.72
CCDC88A-206ENST00000430086 STRN4Q9NRL3 753 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms