RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 DZIP3Q86Y13 1208 aaKnown RBP17.07■□□□□ 0.32
PRPF39-202ENST00000424478 MYD88Q99836 296 aa17.07■□□□□ 0.32
PRPF39-202ENST00000424478 GPTP24298 496 aa17.07■□□□□ 0.32
PRPF39-202ENST00000424478 PTPRCP08575 1304 aa17.06■□□□□ 0.32
PRPF39-202ENST00000424478 DNAAF4Q8WXU2 420 aa17.06■□□□□ 0.32
PRPF39-202ENST00000424478 FAM177BA6PVY3 158 aa17.06■□□□□ 0.32
PRPF39-202ENST00000424478 NPM2Q86SE8 214 aaKnown RBP17.06■□□□□ 0.32
PRPF39-202ENST00000424478 API5Q9BZZ5 524 aaKnown RBP17.06■□□□□ 0.32
PRPF39-202ENST00000424478 ABCC4O15439 1325 aa17.06■□□□□ 0.32
PRPF39-202ENST00000424478 KSR2Q6VAB6 950 aa17.05■□□□□ 0.32
PRPF39-202ENST00000424478 COL15A1P39059 1388 aa17.05■□□□□ 0.32
PRPF39-202ENST00000424478 IL6STP40189 918 aaPredicted RBP17.05■□□□□ 0.32
PRPF39-202ENST00000424478 BAG6P46379 1132 aa17.05■□□□□ 0.32
PRPF39-202ENST00000424478 PDGFDQ9GZP0 370 aaPredicted RBP17.05■□□□□ 0.32
PRPF39-202ENST00000424478 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.05■□□□□ 0.32
PRPF39-202ENST00000424478 SLC27A3Q5K4L6 730 aa17.05■□□□□ 0.32
PRPF39-202ENST00000424478 UPF1Q92900 1129 aaKnown RBP eCLIP17.05■□□□□ 0.32
PRPF39-202ENST00000424478 MSH5O43196 834 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 TFCP2L1Q9NZI6 479 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 RTCBQ9Y3I0 505 aaKnown RBP17.04■□□□□ 0.32
PRPF39-202ENST00000424478 CNTNAP4Q9C0A0 1308 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 BICDL1Q6ZP65 573 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 ARHGAP45Q92619 1136 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 ARHGEF1Q92888 912 aaKnown RBP17.04■□□□□ 0.32
PRPF39-202ENST00000424478 ERBB4Q15303 1308 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 ARFGEF2Q9Y6D5 1785 aa17.04■□□□□ 0.32
PRPF39-202ENST00000424478 MVPQ14764 893 aaKnown RBP17.03■□□□□ 0.32
PRPF39-202ENST00000424478 KIF6Q6ZMV9 814 aa17.03■□□□□ 0.32
PRPF39-202ENST00000424478 MEIS3Q99687 375 aa17.03■□□□□ 0.32
PRPF39-202ENST00000424478 IGKV5-2P06315 115 aa17.03■□□□□ 0.32
PRPF39-202ENST00000424478 PDE3AQ14432 1141 aa17.03■□□□□ 0.32
PRPF39-202ENST00000424478 DDX58O95786 925 aaKnown RBP17.03■□□□□ 0.32
PRPF39-202ENST00000424478 USPL1Q5W0Q7 1092 aa17.03■□□□□ 0.32
PRPF39-202ENST00000424478 RPS6KA4O75676 772 aa17.02■□□□□ 0.32
PRPF39-202ENST00000424478 PLBD2Q8NHP8 589 aa17.02■□□□□ 0.32
PRPF39-202ENST00000424478 BEND3Q5T5X7 828 aa17.02■□□□□ 0.31
PRPF39-202ENST00000424478 ZNF831Q5JPB2 1677 aa17.01■□□□□ 0.31
PRPF39-202ENST00000424478 CICQ96RK0 1608 aaPredicted RBP17.01■□□□□ 0.31
PRPF39-202ENST00000424478 SYNE4Q8N205 404 aa17.01■□□□□ 0.31
PRPF39-202ENST00000424478 CHMP4AQ9BY43 222 aa17.01■□□□□ 0.31
PRPF39-202ENST00000424478 MAP3K15Q6ZN16 1313 aa17.01■□□□□ 0.31
PRPF39-202ENST00000424478 RREB1Q92766 1687 aa17.01■□□□□ 0.31
PRPF39-202ENST00000424478 UBR3Q6ZT12 1888 aa17.01■□□□□ 0.31
PRPF39-202ENST00000424478 CAMTA2O94983 1202 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 CCDC24Q8N4L8 307 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 METTL22Q9BUU2 404 aaPredicted RBP17■□□□□ 0.31
PRPF39-202ENST00000424478 UTRNP46939 3433 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 NUP188Q5SRE5 1749 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 NBPF7P0C2Y1 421 aaPredicted RBP17■□□□□ 0.31
PRPF39-202ENST00000424478 TRAPPC3LQ5T215 181 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 RC3H1Q5TC82 1133 aaKnown RBP17■□□□□ 0.31
PRPF39-202ENST00000424478 TUBGCP6Q96RT7 1819 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 SRCIN1Q9C0H9 1055 aa17■□□□□ 0.31
PRPF39-202ENST00000424478 AKT1S1Q96B36 256 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 RFC4P35249 363 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 MSL1Q68DK7 614 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 INTS3Q68E01 1043 aaKnown RBP16.99■□□□□ 0.31
PRPF39-202ENST00000424478 B4GALNT3Q6L9W6 998 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 BCL2L12Q9HB09 334 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 NUP98P52948 1817 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 C4AP0C0L4 1744 aa16.99■□□□□ 0.31
PRPF39-202ENST00000424478 COL23A1Q86Y22 540 aaPredicted RBP16.99■□□□□ 0.31
PRPF39-202ENST00000424478 AFDNP55196 1824 aaKnown RBP16.98■□□□□ 0.31
PRPF39-202ENST00000424478 NEURL1BA8MQ27 555 aa16.98■□□□□ 0.31
PRPF39-202ENST00000424478 ZBTB7BO15156 539 aaPredicted RBP16.98■□□□□ 0.31
PRPF39-202ENST00000424478 USP44Q9H0E7 712 aa16.97■□□□□ 0.31
PRPF39-202ENST00000424478 UBN2Q6ZU65 1347 aa16.97■□□□□ 0.31
PRPF39-202ENST00000424478 NEXNQ0ZGT2 675 aa16.97■□□□□ 0.31
PRPF39-202ENST00000424478 GIGYF2Q6Y7W6 1299 aaKnown RBP16.97■□□□□ 0.31
PRPF39-202ENST00000424478 ZPR1O75312 459 aa16.97■□□□□ 0.31
PRPF39-202ENST00000424478 TBC1D9BQ66K14 1250 aa16.97■□□□□ 0.31
PRPF39-202ENST00000424478 CCT4P50991 539 aaKnown RBP16.96■□□□□ 0.31
PRPF39-202ENST00000424478 PNPLA7Q6ZV29 1317 aa16.96■□□□□ 0.31
PRPF39-202ENST00000424478 TCIRG1Q13488 830 aa16.96■□□□□ 0.31
PRPF39-202ENST00000424478 LINS1Q8NG48 757 aa16.96■□□□□ 0.31
PRPF39-202ENST00000424478 BCL11AQ9H165 835 aa16.96■□□□□ 0.31
PRPF39-202ENST00000424478 NIP7Q9Y221 180 aaKnown RBP eCLIP16.96■□□□□ 0.316e-7■■■■■ 31.5
PRPF39-202ENST00000424478 PCDHB15Q9Y5E8 787 aa16.96■□□□□ 0.31
PRPF39-202ENST00000424478 SLC15A2Q16348 729 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 UBE3BQ7Z3V4 1068 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 FAM89AQ96GI7 184 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 C9orf78Q9NZ63 289 aaPredicted RBP16.95■□□□□ 0.3
PRPF39-202ENST00000424478 DDX19BQ9UMR2 479 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 MS4A1P11836 297 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 GCKRQ14397 625 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 NUTM1Q86Y26 1132 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 NARFQ9UHQ1 456 aa16.95■□□□□ 0.3
PRPF39-202ENST00000424478 USP42Q9H9J4 1324 aaKnown RBP16.94■□□□□ 0.3
PRPF39-202ENST00000424478 A0A087WZG4 1122 aa16.94■□□□□ 0.3
PRPF39-202ENST00000424478 PSDA5PKW4 1024 aaPredicted RBP16.94■□□□□ 0.3
PRPF39-202ENST00000424478 CCDC85AQ96PX6 553 aaPredicted RBP16.94■□□□□ 0.3
PRPF39-202ENST00000424478 ZBTB40Q9NUA8 1239 aa16.94■□□□□ 0.3
PRPF39-202ENST00000424478 STK32BQ9NY57 414 aa16.94■□□□□ 0.3
PRPF39-202ENST00000424478 LRRFIP2Q9Y608 721 aaKnown RBP16.94■□□□□ 0.3
PRPF39-202ENST00000424478 SUSD4Q5VX71 490 aa16.93■□□□□ 0.3
PRPF39-202ENST00000424478 RGPD3A6NKT7 1758 aaPredicted RBP16.93■□□□□ 0.3
PRPF39-202ENST00000424478 RGPD4Q7Z3J3 1758 aa16.93■□□□□ 0.3
PRPF39-202ENST00000424478 GYS1P13807 737 aa16.93■□□□□ 0.3
PRPF39-202ENST00000424478 NLRP10Q86W26 655 aa16.93■□□□□ 0.3
PRPF39-202ENST00000424478 ISCA1Q9BUE6 129 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms