RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 CHPF2Q9P2E5 772 aa16.15■□□□□ 0.18
SKA1-203ENST00000417656 AFDNP55196 1824 aaKnown RBP16.15■□□□□ 0.18
SKA1-203ENST00000417656 DDR1Q08345 913 aa16.14■□□□□ 0.17
SKA1-203ENST00000417656 LRP10Q7Z4F1 713 aa16.14■□□□□ 0.17
SKA1-203ENST00000417656 KLHL34Q8N239 644 aa16.14■□□□□ 0.17
SKA1-203ENST00000417656 NRXN2Q9P2S2 1712 aa16.14■□□□□ 0.17
SKA1-203ENST00000417656 NUP98P52948 1817 aa16.13■□□□□ 0.17
SKA1-203ENST00000417656 KIF13BQ9NQT8 1826 aa16.13■□□□□ 0.17
SKA1-203ENST00000417656 EXOSC9Q06265 439 aaKnown RBP16.13■□□□□ 0.17
SKA1-203ENST00000417656 GOLGA2Q08379 1002 aa16.13■□□□□ 0.17
SKA1-203ENST00000417656 TTLL7Q6ZT98 887 aa16.13■□□□□ 0.17
SKA1-203ENST00000417656 FHDC1Q9C0D6 1143 aaPredicted RBP16.13■□□□□ 0.17
SKA1-203ENST00000417656 DDX21Q9NR30 783 aaKnown RBP eCLIP16.13■□□□□ 0.17
SKA1-203ENST00000417656 ANKRD36CQ5JPF3 1778 aa16.13■□□□□ 0.17
SKA1-203ENST00000417656 HNRNPUQ00839 825 aaKnown RBP eCLIP16.12■□□□□ 0.17
SKA1-203ENST00000417656 NFIXQ14938 502 aa16.12■□□□□ 0.17
SKA1-203ENST00000417656 TWISTNBQ3B726 338 aaPredicted RBP16.12■□□□□ 0.17
SKA1-203ENST00000417656 KIF6Q6ZMV9 814 aa16.12■□□□□ 0.17
SKA1-203ENST00000417656 ARFGEF2Q9Y6D5 1785 aa16.12■□□□□ 0.17
SKA1-203ENST00000417656 C10orf71Q711Q0 1435 aa16.11■□□□□ 0.17
SKA1-203ENST00000417656 KIAA1551Q9HCM1 1747 aa16.11■□□□□ 0.17
SKA1-203ENST00000417656 TBC1D9BQ66K14 1250 aa16.11■□□□□ 0.17
SKA1-203ENST00000417656 BICDL1Q6ZP65 573 aa16.11■□□□□ 0.17
SKA1-203ENST00000417656 CDCA7LQ96GN5 454 aa16.11■□□□□ 0.17
SKA1-203ENST00000417656 DBF4Q9UBU7 674 aaPredicted RBP16.11■□□□□ 0.17
SKA1-203ENST00000417656 MAP3K15Q6ZN16 1313 aa16.11■□□□□ 0.17
SKA1-203ENST00000417656 E9PSI1 815 aa16.1■□□□□ 0.17
SKA1-203ENST00000417656 POLRMTO00411 1230 aaKnown RBP16.1■□□□□ 0.17
SKA1-203ENST00000417656 TM4SF1P30408 202 aa16.1■□□□□ 0.17
SKA1-203ENST00000417656 XAGE3Q8WTP9 111 aa16.1■□□□□ 0.17
SKA1-203ENST00000417656 ZBTB3Q9H5J0 574 aa16.1■□□□□ 0.17
SKA1-203ENST00000417656 ZNF652Q9Y2D9 606 aa16.1■□□□□ 0.17
SKA1-203ENST00000417656 PARP3Q9Y6F1 533 aa16.1■□□□□ 0.17
SKA1-203ENST00000417656 TCERG1O14776 1098 aaKnown RBP16.09■□□□□ 0.17
SKA1-203ENST00000417656 SLFN5Q08AF3 891 aa16.09■□□□□ 0.17
SKA1-203ENST00000417656 AIMP1Q12904 312 aaKnown RBP16.09■□□□□ 0.17
SKA1-203ENST00000417656 HLFQ16534 295 aa16.09■□□□□ 0.17
SKA1-203ENST00000417656 CARMIL3Q8ND23 1372 aa16.09■□□□□ 0.17
SKA1-203ENST00000417656 ATP10DQ9P241 1426 aa16.09■□□□□ 0.17
SKA1-203ENST00000417656 CCDC30Q5VVM6 783 aa16.08■□□□□ 0.16
SKA1-203ENST00000417656 COPS6Q7L5N1 327 aa16.08■□□□□ 0.16
SKA1-203ENST00000417656 ERVV-1B6SEH8 477 aa16.07■□□□□ 0.16
SKA1-203ENST00000417656 RGL2O15211 777 aa16.07■□□□□ 0.16
SKA1-203ENST00000417656 NLGN2Q8NFZ4 835 aa16.07■□□□□ 0.16
SKA1-203ENST00000417656 SYT17Q9BSW7 474 aa16.07■□□□□ 0.16
SKA1-203ENST00000417656 HYPKQ9NX55 129 aa16.07■□□□□ 0.16
SKA1-203ENST00000417656 N4BP2Q86UW6 1770 aaPredicted RBP16.07■□□□□ 0.16
SKA1-203ENST00000417656 ANKRD31Q8N7Z5 1873 aa16.07■□□□□ 0.16
SKA1-203ENST00000417656 PXDNLA1KZ92 1463 aa16.06■□□□□ 0.16
SKA1-203ENST00000417656 VAMP4O75379 141 aa16.06■□□□□ 0.16
SKA1-203ENST00000417656 SERPINB2P05120 415 aa16.06■□□□□ 0.16
SKA1-203ENST00000417656 CLEC4GQ6UXB4 293 aa16.06■□□□□ 0.16
SKA1-203ENST00000417656 STK31Q9BXU1 1019 aa16.06■□□□□ 0.16
SKA1-203ENST00000417656 PHAXQ9H814 394 aaKnown RBP16.06■□□□□ 0.16
SKA1-203ENST00000417656 SETDB2Q96T68 719 aa16.05■□□□□ 0.16
SKA1-203ENST00000417656 CHMP4AQ9BY43 222 aa16.05■□□□□ 0.16
SKA1-203ENST00000417656 NIP7Q9Y221 180 aaKnown RBP eCLIP16.05■□□□□ 0.16
SKA1-203ENST00000417656 CD2APQ9Y5K6 639 aa16.05■□□□□ 0.16
SKA1-203ENST00000417656 CACNA1FO60840 1977 aa16.05■□□□□ 0.16
SKA1-203ENST00000417656 COL11A2P13942 1736 aaPredicted RBP16.05■□□□□ 0.16
SKA1-203ENST00000417656 ZBED9Q6R2W3 1325 aa16.04■□□□□ 0.16
SKA1-203ENST00000417656 GPTP24298 496 aa16.04■□□□□ 0.16
SKA1-203ENST00000417656 GIGYF2Q6Y7W6 1299 aaKnown RBP16.04■□□□□ 0.16
SKA1-203ENST00000417656 TNRC6CQ9HCJ0 1690 aaKnown RBP16.04■□□□□ 0.16
SKA1-203ENST00000417656 DLEC1Q9Y238 1755 aa16.03■□□□□ 0.16
SKA1-203ENST00000417656 UBN2Q6ZU65 1347 aa16.03■□□□□ 0.16
SKA1-203ENST00000417656 TRMT2AQ8IZ69 625 aaKnown RBP16.03■□□□□ 0.16
SKA1-203ENST00000417656 PLBD2Q8NHP8 589 aa16.03■□□□□ 0.16
SKA1-203ENST00000417656 ZNF219Q9P2Y4 722 aaPredicted RBP16.03■□□□□ 0.16
SKA1-203ENST00000417656 BRCA1P38398 1863 aaKnown RBP16.03■□□□□ 0.16
SKA1-203ENST00000417656 FAM177BA6PVY3 158 aa16.02■□□□□ 0.16
SKA1-203ENST00000417656 PRR5LQ6MZQ0 368 aa16.02■□□□□ 0.16
SKA1-203ENST00000417656 POTEHQ6S545 545 aa16.02■□□□□ 0.16
SKA1-203ENST00000417656 G2E3Q7L622 706 aa16.02■□□□□ 0.16
SKA1-203ENST00000417656 NBPF5PQ86XG9 351 aaPredicted RBP16.02■□□□□ 0.16
SKA1-203ENST00000417656 CCDC24Q8N4L8 307 aa16.02■□□□□ 0.16
SKA1-203ENST00000417656 CNBD1Q8NA66 436 aa16.02■□□□□ 0.16
SKA1-203ENST00000417656 NPHP1O15259 732 aa16.01■□□□□ 0.15
SKA1-203ENST00000417656 ANKRD13DQ6ZTN6 518 aa16.01■□□□□ 0.15
SKA1-203ENST00000417656 ZNF34Q8IZ26 560 aa16.01■□□□□ 0.15
SKA1-203ENST00000417656 ADCY9O60503 1353 aa16■□□□□ 0.15
SKA1-203ENST00000417656 ABCC12Q96J65 1359 aa16■□□□□ 0.15
SKA1-203ENST00000417656 IBTKQ9P2D0 1353 aaPredicted RBP16■□□□□ 0.15
SKA1-203ENST00000417656 HSP90AB3PQ58FF7 597 aa16■□□□□ 0.15
SKA1-203ENST00000417656 RIC3Q7Z5B4 369 aa16■□□□□ 0.15
SKA1-203ENST00000417656 DDX58O95786 925 aaKnown RBP15.99■□□□□ 0.15
SKA1-203ENST00000417656 ST5P78524 1137 aa15.99■□□□□ 0.15
SKA1-203ENST00000417656 FLIIQ13045 1269 aa15.99■□□□□ 0.15
SKA1-203ENST00000417656 TCIRG1Q13488 830 aa15.99■□□□□ 0.15
SKA1-203ENST00000417656 WWC3Q9ULE0 1092 aa15.99■□□□□ 0.15
SKA1-203ENST00000417656 LAMB2P55268 1798 aa15.98■□□□□ 0.15
SKA1-203ENST00000417656 DPEP1P16444 411 aa15.98■□□□□ 0.15
SKA1-203ENST00000417656 SUSD4Q5VX71 490 aa15.98■□□□□ 0.15
SKA1-203ENST00000417656 ZNF428Q96B54 188 aa15.98■□□□□ 0.15
SKA1-203ENST00000417656 CACNA1SQ13698 1873 aa15.97■□□□□ 0.15
SKA1-203ENST00000417656 A0A0G2JLW4 131 aa15.97■□□□□ 0.15
SKA1-203ENST00000417656 ATP5J2-PTCD1G3V325 749 aa15.97■□□□□ 0.15
SKA1-203ENST00000417656 NTSR2O95665 410 aa15.97■□□□□ 0.15
SKA1-203ENST00000417656 CHRNA5P30532 468 aa15.97■□□□□ 0.15
SKA1-203ENST00000417656 FKBP5Q13451 457 aaPredicted RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms