RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 INPP5BP32019 993 aa14.8□□□□□ -0.04
COL6A3-206ENST00000409809 CYLC1P35663 651 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-206ENST00000409809 KRI1Q8N9T8 703 aaKnown RBP14.8□□□□□ -0.04
COL6A3-206ENST00000409809 ZWINTO95229 277 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 BANK1Q8NDB2 785 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 TSPYL4Q9UJ04 414 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 EHBP1L1Q8N3D4 1523 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 BMP15O95972 392 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 RASSF2P50749 326 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 KIAA0753Q2KHM9 967 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 CEP120Q8N960 986 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 RMND1Q9NWS8 449 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 LRRC27Q9C0I9 530 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 A0A1W2PRG0 241 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 CASQ2O14958 399 aaPredicted RBP14.79□□□□□ -0.04
COL6A3-206ENST00000409809 LARP1Q6PKG0 1096 aaKnown RBP14.79□□□□□ -0.04
COL6A3-206ENST00000409809 CEBPZQ03701 1054 aaKnown RBP14.79□□□□□ -0.04
COL6A3-206ENST00000409809 GAS2L2Q8NHY3 880 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 LIMCH1Q9UPQ0 1083 aa14.79□□□□□ -0.04
COL6A3-206ENST00000409809 DAPK1P53355 1430 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 MSH5O43196 834 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 KRT83P78385 493 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 CPLX4Q7Z7G2 160 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 HOMER2Q9NSB8 354 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 THEGQ9P2T0 379 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 ELP1O95163 1332 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 MYRIPQ8NFW9 859 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 AFAP1L1Q8TED9 768 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 LRRC9Q6ZRR7 1453 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 ATRIPQ8WXE1 791 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 TRERF1Q96PN7 1200 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 KRT86O43790 486 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 CIB2O75838 187 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 SKILP12757 684 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 CASTP20810 708 aaKnown RBP14.78□□□□□ -0.04
COL6A3-206ENST00000409809 FOSBP53539 338 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 NLRP5P59047 1200 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 BMP2KLQ5H9B9 411 aa14.78□□□□□ -0.04
COL6A3-206ENST00000409809 BAG4O95429 457 aaKnown RBP14.77□□□□□ -0.04
COL6A3-206ENST00000409809 AMPD3Q01432 767 aa14.77□□□□□ -0.04
COL6A3-206ENST00000409809 LMBR1Q8WVP7 490 aa14.77□□□□□ -0.04
COL6A3-206ENST00000409809 LRPPRCP42704 1394 aaKnown RBP14.77□□□□□ -0.04
COL6A3-206ENST00000409809 CUL7Q14999 1698 aa14.77□□□□□ -0.04
COL6A3-206ENST00000409809 SURF6O75683 361 aaKnown RBP14.77□□□□□ -0.04
COL6A3-206ENST00000409809 MCM6Q14566 821 aa14.77□□□□□ -0.04
COL6A3-206ENST00000409809 XRCC6P12956 609 aaKnown RBP eCLIP14.77□□□□□ -0.04
COL6A3-206ENST00000409809 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.77□□□□□ -0.04
COL6A3-206ENST00000409809 TBC1D32Q96NH3 1257 aa14.77□□□□□ -0.04
COL6A3-206ENST00000409809 CWC25Q9NXE8 425 aaPredicted RBP14.77□□□□□ -0.04
COL6A3-206ENST00000409809 TMC6Q7Z403 805 aa14.77□□□□□ -0.05
COL6A3-206ENST00000409809 ZNF287Q9HBT7 754 aa14.77□□□□□ -0.05
COL6A3-206ENST00000409809 MX1P20591 662 aa14.77□□□□□ -0.05
COL6A3-206ENST00000409809 DZIP1Q86YF9 867 aaKnown RBP14.77□□□□□ -0.05
COL6A3-206ENST00000409809 SNX21Q969T3 373 aa14.77□□□□□ -0.05
COL6A3-206ENST00000409809 CASKIN1Q8WXD9 1431 aa14.77□□□□□ -0.05
COL6A3-206ENST00000409809 LARSQ9P2J5 1176 aaKnown RBP14.77□□□□□ -0.05
COL6A3-206ENST00000409809 PPP1R14CQ8TAE6 165 aa14.76□□□□□ -0.05
COL6A3-206ENST00000409809 TBC1D2Q9BYX2 928 aa14.76□□□□□ -0.05
COL6A3-206ENST00000409809 BCAP29Q9UHQ4 241 aa14.76□□□□□ -0.05
COL6A3-206ENST00000409809 NCAPD3P42695 1498 aa14.76□□□□□ -0.05
COL6A3-206ENST00000409809 NDC80O14777 642 aa14.76□□□□□ -0.05
COL6A3-206ENST00000409809 MYO1BO43795 1136 aa14.76□□□□□ -0.05
COL6A3-206ENST00000409809 PPFIA2O75334 1257 aa14.76□□□□□ -0.05
COL6A3-206ENST00000409809 ERCC6LQ2NKX8 1250 aa14.76□□□□□ -0.05
COL6A3-206ENST00000409809 KRBA2Q6ZNG9 492 aa14.76□□□□□ -0.05
COL6A3-206ENST00000409809 PNISRQ8TF01 805 aaKnown RBP14.76□□□□□ -0.05
COL6A3-206ENST00000409809 AKAP2Q9Y2D5 859 aa14.76□□□□□ -0.05
COL6A3-206ENST00000409809 PCK1P35558 622 aa14.76□□□□□ -0.05
COL6A3-206ENST00000409809 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.76□□□□□ -0.05
COL6A3-206ENST00000409809 PPFIA1Q13136 1202 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 ALDH1L2Q3SY69 923 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 EFCC1Q9HA90 598 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 HMG20BQ9P0W2 317 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 WDR97A6NE52 1622 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 RLBP1P12271 317 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 SOGA3Q5TF21 947 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 JPH4Q96JJ6 628 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 FGD5Q6ZNL6 1462 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 CNGA1P29973 690 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 MAP3K21Q5TCX8 1036 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 KLHL34Q8N239 644 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 VPS18Q9P253 973 aa14.75□□□□□ -0.05
COL6A3-206ENST00000409809 RPGRIP1Q96KN7 1286 aa14.74□□□□□ -0.05
COL6A3-206ENST00000409809 HDAC9Q9UKV0 1011 aa14.74□□□□□ -0.05
COL6A3-206ENST00000409809 ATL3Q6DD88 541 aa14.74□□□□□ -0.05
COL6A3-206ENST00000409809 STX6O43752 255 aa14.74□□□□□ -0.05
COL6A3-206ENST00000409809 JAKMIP1Q96N16 626 aaKnown RBP14.74□□□□□ -0.05
COL6A3-206ENST00000409809 KIF1CO43896 1103 aaKnown RBP14.74□□□□□ -0.05
COL6A3-206ENST00000409809 TRHP20396 242 aaPredicted RBP14.74□□□□□ -0.05
COL6A3-206ENST00000409809 ACTN2P35609 894 aa14.74□□□□□ -0.05
COL6A3-206ENST00000409809 TRPC3Q13507 836 aa14.74□□□□□ -0.05
COL6A3-206ENST00000409809 KIAA1524Q8TCG1 905 aa14.74□□□□□ -0.05
COL6A3-206ENST00000409809 GLRX3O76003 335 aaKnown RBP14.73□□□□□ -0.05
COL6A3-206ENST00000409809 ELL2O00472 640 aaPredicted RBP14.73□□□□□ -0.05
COL6A3-206ENST00000409809 TOP2BQ02880 1626 aa14.73□□□□□ -0.05
COL6A3-206ENST00000409809 PAF1Q8N7H5 531 aa14.73□□□□□ -0.05
COL6A3-206ENST00000409809 CCDC141Q6ZP82 1450 aa14.73□□□□□ -0.05
COL6A3-206ENST00000409809 ZBTB16Q05516 673 aa14.73□□□□□ -0.05
COL6A3-206ENST00000409809 CFAP58Q5T655 872 aa14.73□□□□□ -0.05
COL6A3-206ENST00000409809 KCNG4Q8TDN1 519 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms