RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 PRPF40AO75400 957 aaKnown RBP4.68□□□□□ -1.66
RTN4-209ENST00000405240 NECTIN1Q15223 517 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 RUFY3Q7L099 469 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 PI4KAP1Q8N8J0 262 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 ZSWIM6Q9HCJ5 1215 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 NOL7Q9UMY1 257 aaKnown RBP4.68□□□□□ -1.66
RTN4-209ENST00000405240 MED23Q9ULK4 1368 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 BTBD11A6QL63 1104 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 APBB1O00213 710 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 GCP02774 474 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 ST3GAL1Q11201 340 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 PPP4R3CPQ6ZMV5 832 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 ZSCAN30Q86W11 494 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 NUTM1Q86Y26 1132 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 RASEFQ8IZ41 740 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 HYPKQ9NX55 129 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 TOGARAM1Q9Y4F4 1720 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 NWD2Q9ULI1 1742 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 SRGAP3O43295 1099 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 GLRX3O76003 335 aaKnown RBP4.68□□□□□ -1.66
RTN4-209ENST00000405240 MCM5P33992 734 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 VPS53Q5VIR6 699 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 NUTM2GQ5VZR2 741 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 CAVIN1Q6NZI2 390 aaKnown RBP4.68□□□□□ -1.66
RTN4-209ENST00000405240 TICAM2Q86XR7 235 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 CNTROBQ8N137 903 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.68□□□□□ -1.66
RTN4-209ENST00000405240 MEGF6O75095 1541 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 KCPQ6ZWJ8 1503 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 WDR33Q9C0J8 1336 aaKnown RBP4.68□□□□□ -1.66
RTN4-209ENST00000405240 MYH7P12883 1935 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 SURF6O75683 361 aaKnown RBP4.67□□□□□ -1.66
RTN4-209ENST00000405240 SASH1O94885 1247 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 PROSER3Q2NL68 480 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 ERC1Q8IUD2 1116 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 FUCA2Q9BTY2 467 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 AXIN2Q9Y2T1 843 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.67□□□□□ -1.66
RTN4-209ENST00000405240 ANKRD36CQ5JPF3 1778 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 OFD1O75665 1012 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 USPL1Q5W0Q7 1092 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 LINS1Q8NG48 757 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 MAP4K1Q92918 833 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 RILPL2Q969X0 211 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 IL1RAPL2Q9NP60 686 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 ANO2Q9NQ90 1003 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 DDX21Q9NR30 783 aaKnown RBP eCLIP4.67□□□□□ -1.664e-6■■■■□ 21
RTN4-209ENST00000405240 RBM27Q9P2N5 1060 aaKnown RBP4.67□□□□□ -1.66
RTN4-209ENST00000405240 HDAC5Q9UQL6 1122 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 ERBB3P21860 1342 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 IGKV5-2P06315 115 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 RFX5P48382 616 aaPredicted RBP4.67□□□□□ -1.66
RTN4-209ENST00000405240 AK2P54819 239 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 UVSSAQ2YD98 709 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 ZNF530Q6P9A1 599 aaPredicted RBP4.67□□□□□ -1.66
RTN4-209ENST00000405240 NECTIN2Q92692 538 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 LRRC59Q96AG4 307 aaKnown RBP4.67□□□□□ -1.66
RTN4-209ENST00000405240 EVI5LQ96CN4 794 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 CHAMP1Q96JM3 812 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 ECHDC1Q9NTX5 307 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 LIMCH1Q9UPQ0 1083 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 MAP3K2Q9Y2U5 619 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 ARAP2Q8WZ64 1704 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 CPDO75976 1380 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 TRIM6-TRIM34B2RNG4 842 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 PDIA4P13667 645 aaKnown RBP4.67□□□□□ -1.66
RTN4-209ENST00000405240 PTH1RQ03431 593 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 RABL6Q3YEC7 729 aaPredicted RBP4.67□□□□□ -1.66
RTN4-209ENST00000405240 ANKRD24Q8TF21 1146 aa4.67□□□□□ -1.66
RTN4-209ENST00000405240 WNK3Q9BYP7 1800 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 CCDC171Q6TFL3 1326 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 ZSCAN22P10073 491 aaPredicted RBP4.66□□□□□ -1.66
RTN4-209ENST00000405240 CASP7P55210 303 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 USP48Q86UV5 1035 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 SUCLG2Q96I99 432 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 COL22A1Q8NFW1 1626 aaPredicted RBP4.66□□□□□ -1.66
RTN4-209ENST00000405240 GRM8O00222 908 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 PSME1Q06323 249 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 MPRIPQ6WCQ1 1025 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 ZSCAN31Q96LW9 406 aaPredicted RBP4.66□□□□□ -1.66
RTN4-209ENST00000405240 ECM29Q5VYK3 1845 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 C4AP0C0L4 1744 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 C4BP0C0L5 1744 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 NHSL1Q5SYE7 1610 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 PRAMEF22A3QJZ6 481 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 HIP1O00291 1037 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 GADD45BO75293 160 aaPredicted RBP4.66□□□□□ -1.66
RTN4-209ENST00000405240 LARGE1O95461 756 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 LTV1Q96GA3 475 aaPredicted RBP4.66□□□□□ -1.66
RTN4-209ENST00000405240 SLC52A2Q9HAB3 445 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 COPRSQ9NQ92 184 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 SH2B1Q9NRF2 756 aaPredicted RBP4.66□□□□□ -1.66
RTN4-209ENST00000405240 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.66□□□□□ -1.66
RTN4-209ENST00000405240 TNS2Q63HR2 1409 aa4.66□□□□□ -1.66
RTN4-209ENST00000405240 CICQ96RK0 1608 aaPredicted RBP4.65□□□□□ -1.66
RTN4-209ENST00000405240 NEURL1BA8MQ27 555 aa4.65□□□□□ -1.66
RTN4-209ENST00000405240 LETM1O95202 739 aaPredicted RBP4.65□□□□□ -1.66
RTN4-209ENST00000405240 F13A1P00488 732 aa4.65□□□□□ -1.66
RTN4-209ENST00000405240 SYT1P21579 422 aa4.65□□□□□ -1.66
RTN4-209ENST00000405240 ADCK5Q3MIX3 580 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms