RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 KIAA1551Q9HCM1 1747 aa30.79■■■□□ 2.52
SHMT1-204ENST00000395682 CCDC27Q2M243 656 aa30.79■■■□□ 2.52
SHMT1-204ENST00000395682 BCS1LQ9Y276 419 aa30.79■■■□□ 2.52
SHMT1-204ENST00000395682 ERVV-1B6SEH8 477 aa30.78■■■□□ 2.52
SHMT1-204ENST00000395682 PIM2Q9P1W9 311 aa30.78■■■□□ 2.52
SHMT1-204ENST00000395682 NRXN2Q9P2S2 1712 aa30.78■■■□□ 2.52
SHMT1-204ENST00000395682 BCORQ6W2J9 1755 aa30.77■■■□□ 2.52
SHMT1-204ENST00000395682 ANXA1P04083 346 aa30.77■■■□□ 2.52
SHMT1-204ENST00000395682 PROSER3Q2NL68 480 aa30.77■■■□□ 2.52
SHMT1-204ENST00000395682 PRR5LQ6MZQ0 368 aa30.77■■■□□ 2.52
SHMT1-204ENST00000395682 WWC1Q8IX03 1113 aa30.77■■■□□ 2.52
SHMT1-204ENST00000395682 NIP7Q9Y221 180 aaKnown RBP eCLIP30.77■■■□□ 2.52
SHMT1-204ENST00000395682 MAP3K15Q6ZN16 1313 aa30.76■■■□□ 2.52
SHMT1-204ENST00000395682 NPHP1O15259 732 aa30.76■■■□□ 2.51
SHMT1-204ENST00000395682 HOXB7P09629 217 aa30.76■■■□□ 2.51
SHMT1-204ENST00000395682 DUSP27Q5VZP5 1158 aa30.76■■■□□ 2.51
SHMT1-204ENST00000395682 CCDC24Q8N4L8 307 aa30.76■■■□□ 2.51
SHMT1-204ENST00000395682 NCBP3Q53F19 620 aaKnown RBP30.75■■■□□ 2.51
SHMT1-204ENST00000395682 LRP10Q7Z4F1 713 aa30.75■■■□□ 2.51
SHMT1-204ENST00000395682 CNBD1Q8NA66 436 aa30.75■■■□□ 2.51
SHMT1-204ENST00000395682 CHD4Q14839 1912 aa30.75■■■□□ 2.51
SHMT1-204ENST00000395682 HDGFL1Q5TGJ6 251 aa30.74■■■□□ 2.51
SHMT1-204ENST00000395682 NBPF5PQ86XG9 351 aaPredicted RBP30.74■■■□□ 2.51
SHMT1-204ENST00000395682 BRIP1Q9BX63 1249 aa30.74■■■□□ 2.51
SHMT1-204ENST00000395682 ZBTB3Q9H5J0 574 aa30.74■■■□□ 2.51
SHMT1-204ENST00000395682 DALRD3Q5D0E6 543 aaKnown RBP30.73■■■□□ 2.51
SHMT1-204ENST00000395682 C2CD5Q86YS7 1000 aa30.73■■■□□ 2.51
SHMT1-204ENST00000395682 SALL2Q9Y467 1007 aaPredicted RBP30.73■■■□□ 2.51
SHMT1-204ENST00000395682 H0YIN7 160 aa30.72■■■□□ 2.51
SHMT1-204ENST00000395682 DDX21Q9NR30 783 aaKnown RBP eCLIP30.72■■■□□ 2.51
SHMT1-204ENST00000395682 PDE6BP35913 854 aa30.71■■■□□ 2.51
SHMT1-204ENST00000395682 ST5P78524 1137 aa30.71■■■□□ 2.51
SHMT1-204ENST00000395682 FAM177BA6PVY3 158 aa30.7■■■□□ 2.51
SHMT1-204ENST00000395682 ELL2O00472 640 aaPredicted RBP30.7■■■□□ 2.51
SHMT1-204ENST00000395682 TPTE2Q6XPS3 522 aa30.7■■■□□ 2.51
SHMT1-204ENST00000395682 COPS6Q7L5N1 327 aa30.7■■■□□ 2.51
SHMT1-204ENST00000395682 CHPF2Q9P2E5 772 aa30.7■■■□□ 2.51
SHMT1-204ENST00000395682 AIMP1Q12904 312 aaKnown RBP30.69■■■□□ 2.5
SHMT1-204ENST00000395682 XAGE3Q8WTP9 111 aa30.69■■■□□ 2.5
SHMT1-204ENST00000395682 C8orf58Q8NAV2 365 aa30.68■■■□□ 2.5
SHMT1-204ENST00000395682 GIGYF2Q6Y7W6 1299 aaKnown RBP30.67■■■□□ 2.5
SHMT1-204ENST00000395682 ARHGAP27Q6ZUM4 889 aa30.67■■■□□ 2.5
SHMT1-204ENST00000395682 TSR2Q969E8 191 aaKnown RBP30.67■■■□□ 2.5
SHMT1-204ENST00000395682 DBF4Q9UBU7 674 aaPredicted RBP30.67■■■□□ 2.5
SHMT1-204ENST00000395682 PDZRN3Q9UPQ7 1066 aa30.67■■■□□ 2.5
SHMT1-204ENST00000395682 GPTP24298 496 aa30.66■■■□□ 2.5
SHMT1-204ENST00000395682 ZNF34Q8IZ26 560 aa30.65■■■□□ 2.5
SHMT1-204ENST00000395682 IL16Q14005 1332 aa30.65■■■□□ 2.5
SHMT1-204ENST00000395682 BRCA1P38398 1863 aaKnown RBP30.65■■■□□ 2.5
SHMT1-204ENST00000395682 GTF2E1P29083 439 aaPredicted RBP30.64■■■□□ 2.5
SHMT1-204ENST00000395682 TTLL6Q8N841 843 aa30.64■■■□□ 2.5
SHMT1-204ENST00000395682 ZNF622Q969S3 477 aaKnown RBP eCLIP30.64■■■□□ 2.5
SHMT1-204ENST00000395682 ATP10DQ9P241 1426 aa30.64■■■□□ 2.49
SHMT1-204ENST00000395682 NUP98P52948 1817 aa30.63■■■□□ 2.49
SHMT1-204ENST00000395682 WDR63Q8IWG1 891 aa30.63■■■□□ 2.49
SHMT1-204ENST00000395682 NYXQ9GZU5 481 aa30.63■■■□□ 2.49
SHMT1-204ENST00000395682 HYPKQ9NX55 129 aa30.63■■■□□ 2.49
SHMT1-204ENST00000395682 ZNF784Q8NCA9 323 aaPredicted RBP30.62■■■□□ 2.49
SHMT1-204ENST00000395682 ANKRD31Q8N7Z5 1873 aa30.61■■■□□ 2.49
SHMT1-204ENST00000395682 TSPYL6Q8N831 410 aa30.61■■■□□ 2.49
SHMT1-204ENST00000395682 SUSD4Q5VX71 490 aa30.6■■■□□ 2.49
SHMT1-204ENST00000395682 UBN2Q6ZU65 1347 aa30.6■■■□□ 2.49
SHMT1-204ENST00000395682 CHMP4AQ9BY43 222 aa30.59■■■□□ 2.49
SHMT1-204ENST00000395682 SRGNP10124 158 aa30.58■■■□□ 2.49
SHMT1-204ENST00000395682 ANKRD13DQ6ZTN6 518 aa30.58■■■□□ 2.49
SHMT1-204ENST00000395682 NUTM1Q86Y26 1132 aa30.58■■■□□ 2.49
SHMT1-204ENST00000395682 ERFEQ4G0M1 354 aa30.57■■■□□ 2.48
SHMT1-204ENST00000395682 PARP10Q53GL7 1025 aa30.57■■■□□ 2.48
SHMT1-204ENST00000395682 HSP90AB3PQ58FF7 597 aa30.57■■■□□ 2.48
SHMT1-204ENST00000395682 MASTLQ96GX5 879 aa30.57■■■□□ 2.48
SHMT1-204ENST00000395682 ARFGEF1Q9Y6D6 1849 aa30.57■■■□□ 2.48
SHMT1-204ENST00000395682 KLRG2A4D1S0 409 aaPredicted RBP30.56■■■□□ 2.48
SHMT1-204ENST00000395682 CCER2I3L3R5 266 aa30.56■■■□□ 2.48
SHMT1-204ENST00000395682 TCIRG1Q13488 830 aa30.56■■■□□ 2.48
SHMT1-204ENST00000395682 CCDC30Q5VVM6 783 aa30.56■■■□□ 2.48
SHMT1-204ENST00000395682 STYK1Q6J9G0 422 aa30.56■■■□□ 2.48
SHMT1-204ENST00000395682 PPP1R42Q7Z4L9 355 aa30.56■■■□□ 2.48
SHMT1-204ENST00000395682 PLBD2Q8NHP8 589 aa30.56■■■□□ 2.48
SHMT1-204ENST00000395682 CNKSR1Q969H4 720 aa30.55■■■□□ 2.48
SHMT1-204ENST00000395682 DLEC1Q9Y238 1755 aa30.54■■■□□ 2.48
SHMT1-204ENST00000395682 IBTKQ9P2D0 1353 aaPredicted RBP30.54■■■□□ 2.48
SHMT1-204ENST00000395682 FANCIQ9NVI1 1328 aa30.53■■■□□ 2.48
SHMT1-204ENST00000395682 NTSR2O95665 410 aa30.53■■■□□ 2.48
SHMT1-204ENST00000395682 TWISTNBQ3B726 338 aaPredicted RBP30.53■■■□□ 2.48
SHMT1-204ENST00000395682 UTP14AQ9BVJ6 771 aaKnown RBP30.53■■■□□ 2.48
SHMT1-204ENST00000395682 PHAXQ9H814 394 aaKnown RBP30.53■■■□□ 2.48
SHMT1-204ENST00000395682 NPR1P16066 1061 aa30.52■■■□□ 2.48
SHMT1-204ENST00000395682 NLRP10Q86W26 655 aa30.51■■■□□ 2.47
SHMT1-204ENST00000395682 SPINK5Q9NQ38 1064 aaPredicted RBP30.51■■■□□ 2.47
SHMT1-204ENST00000395682 ZNF219Q9P2Y4 722 aaPredicted RBP30.51■■■□□ 2.47
SHMT1-204ENST00000395682 ABCC12Q96J65 1359 aa30.51■■■□□ 2.47
SHMT1-204ENST00000395682 GOLGA2Q08379 1002 aa30.5■■■□□ 2.47
SHMT1-204ENST00000395682 COL11A2P13942 1736 aaPredicted RBP30.5■■■□□ 2.47
SHMT1-204ENST00000395682 C21orf2O43822 256 aa30.49■■■□□ 2.47
SHMT1-204ENST00000395682 DIEXFQ68CQ4 756 aaKnown RBP30.49■■■□□ 2.47
SHMT1-204ENST00000395682 PRPF40BQ6NWY9 871 aaKnown RBP30.49■■■□□ 2.47
SHMT1-204ENST00000395682 RIC3Q7Z5B4 369 aa30.49■■■□□ 2.47
SHMT1-204ENST00000395682 TCERG1O14776 1098 aaKnown RBP30.48■■■□□ 2.47
SHMT1-204ENST00000395682 STK31Q9BXU1 1019 aa30.48■■■□□ 2.47
SHMT1-204ENST00000395682 EXOSC9Q06265 439 aaKnown RBP30.47■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms