RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 DYNC1I1O14576 645 aa19.12■□□□□ 0.65
PCDH1-203ENST00000394536 HOXC9P31274 260 aa19.12■□□□□ 0.65
PCDH1-203ENST00000394536 SLC39A6Q13433 755 aa19.12■□□□□ 0.65
PCDH1-203ENST00000394536 MYD88Q99836 296 aa19.12■□□□□ 0.65
PCDH1-203ENST00000394536 KIF24Q5T7B8 1368 aa19.11■□□□□ 0.65
PCDH1-203ENST00000394536 APPP05067 770 aa19.11■□□□□ 0.65
PCDH1-203ENST00000394536 CCDC85AQ96PX6 553 aaPredicted RBP19.11■□□□□ 0.65
PCDH1-203ENST00000394536 FAM227BQ96M60 508 aa19.11■□□□□ 0.65
PCDH1-203ENST00000394536 OSBPL3Q9H4L5 887 aa19.11■□□□□ 0.65
PCDH1-203ENST00000394536 SPDYE4A6NLX3 237 aa19.1■□□□□ 0.65
PCDH1-203ENST00000394536 MYOM1P52179 1685 aa19.1■□□□□ 0.65
PCDH1-203ENST00000394536 LTKP29376 864 aa19.1■□□□□ 0.65
PCDH1-203ENST00000394536 CCT2P78371 535 aaKnown RBP19.1■□□□□ 0.65
PCDH1-203ENST00000394536 NMIQ13287 307 aaPredicted RBP19.1■□□□□ 0.65
PCDH1-203ENST00000394536 ATP5J2-PTCD1G3V325 749 aa19.1■□□□□ 0.65
PCDH1-203ENST00000394536 PTCD1O75127 700 aaKnown RBP19.1■□□□□ 0.65
PCDH1-203ENST00000394536 TNRQ92752 1358 aa19.1■□□□□ 0.65
PCDH1-203ENST00000394536 ADGRB1O14514 1584 aa19.09■□□□□ 0.65
PCDH1-203ENST00000394536 UVSSAQ2YD98 709 aa19.09■□□□□ 0.65
PCDH1-203ENST00000394536 TPM3P06753 285 aa19.09■□□□□ 0.65
PCDH1-203ENST00000394536 AATKQ6ZMQ8 1374 aa19.09■□□□□ 0.65
PCDH1-203ENST00000394536 RAD50Q92878 1312 aa19.09■□□□□ 0.65
PCDH1-203ENST00000394536 PTH1RQ03431 593 aa19.09■□□□□ 0.65
PCDH1-203ENST00000394536 LUZP1Q86V48 1076 aa19.09■□□□□ 0.65
PCDH1-203ENST00000394536 SCAND2PQ9GZW5 306 aaPredicted RBP19.09■□□□□ 0.65
PCDH1-203ENST00000394536 NDUFB9Q9Y6M9 179 aa19.09■□□□□ 0.65
PCDH1-203ENST00000394536 SETBP1Q9Y6X0 1596 aa19.09■□□□□ 0.65
PCDH1-203ENST00000394536 TTC21AQ8NDW8 1320 aa19.08■□□□□ 0.65
PCDH1-203ENST00000394536 ZNF165P49910 485 aa19.08■□□□□ 0.65
PCDH1-203ENST00000394536 ZNF771Q7L3S4 317 aaPredicted RBP19.08■□□□□ 0.65
PCDH1-203ENST00000394536 CCDC186Q7Z3E2 898 aa19.08■□□□□ 0.65
PCDH1-203ENST00000394536 HOMER1Q86YM7 354 aa19.08■□□□□ 0.64
PCDH1-203ENST00000394536 PDCL2Q8N4E4 241 aa19.08■□□□□ 0.64
PCDH1-203ENST00000394536 TPM4P67936 248 aa19.08■□□□□ 0.64
PCDH1-203ENST00000394536 RUFY3Q7L099 469 aa19.08■□□□□ 0.64
PCDH1-203ENST00000394536 ARAP3Q8WWN8 1544 aa19.07■□□□□ 0.64
PCDH1-203ENST00000394536 CREB3L3Q68CJ9 461 aa19.07■□□□□ 0.64
PCDH1-203ENST00000394536 SSH3Q8TE77 659 aa19.07■□□□□ 0.64
PCDH1-203ENST00000394536 STK11IPQ8N1F8 1099 aa19.07■□□□□ 0.64
PCDH1-203ENST00000394536 NRXN1Q9ULB1 1477 aa19.07■□□□□ 0.64
PCDH1-203ENST00000394536 FKBP4Q02790 459 aaKnown RBP eCLIP19.07■□□□□ 0.64
PCDH1-203ENST00000394536 ADCK5Q3MIX3 580 aa19.07■□□□□ 0.64
PCDH1-203ENST00000394536 ANO6Q4KMQ2 910 aa19.07■□□□□ 0.64
PCDH1-203ENST00000394536 DDX46Q7L014 1031 aaKnown RBP19.07■□□□□ 0.64
PCDH1-203ENST00000394536 ZHX1Q9UKY1 873 aaPredicted RBP19.07■□□□□ 0.64
PCDH1-203ENST00000394536 PLEKHG3A1L390 1219 aa19.06■□□□□ 0.64
PCDH1-203ENST00000394536 EDC3Q96F86 508 aaKnown RBP19.06■□□□□ 0.64
PCDH1-203ENST00000394536 MAP3K5Q99683 1374 aa19.06■□□□□ 0.64
PCDH1-203ENST00000394536 IBTKQ9P2D0 1353 aaPredicted RBP19.06■□□□□ 0.64
PCDH1-203ENST00000394536 ZNF500O60304 480 aaPredicted RBP19.06■□□□□ 0.64
PCDH1-203ENST00000394536 CYP2E1P05181 493 aaPredicted RBP19.06■□□□□ 0.64
PCDH1-203ENST00000394536 CUL4AQ13619 759 aa19.06■□□□□ 0.64
PCDH1-203ENST00000394536 SYNE3Q6ZMZ3 975 aa19.06■□□□□ 0.64
PCDH1-203ENST00000394536 SMC2O95347 1197 aa19.06■□□□□ 0.64
PCDH1-203ENST00000394536 UBE3BQ7Z3V4 1068 aa19.06■□□□□ 0.64
PCDH1-203ENST00000394536 CREBRFQ8IUR6 639 aa19.06■□□□□ 0.64
PCDH1-203ENST00000394536 BRF1Q92994 677 aa19.06■□□□□ 0.64
PCDH1-203ENST00000394536 PTGS1P23219 599 aa19.05■□□□□ 0.64
PCDH1-203ENST00000394536 PPP4R3BQ5MIZ7 849 aa19.05■□□□□ 0.64
PCDH1-203ENST00000394536 CCDC112Q8NEF3 446 aa19.05■□□□□ 0.64
PCDH1-203ENST00000394536 TRMT1Q9NXH9 659 aaKnown RBP19.05■□□□□ 0.64
PCDH1-203ENST00000394536 MED14O60244 1454 aa19.05■□□□□ 0.64
PCDH1-203ENST00000394536 GRM8O00222 908 aa19.05■□□□□ 0.64
PCDH1-203ENST00000394536 KCNA6P17658 529 aa19.05■□□□□ 0.64
PCDH1-203ENST00000394536 CLEC17AQ6ZS10 378 aa19.05■□□□□ 0.64
PCDH1-203ENST00000394536 DNAJC25Q9H1X3 360 aa19.05■□□□□ 0.64
PCDH1-203ENST00000394536 STK38Q15208 465 aa19.04■□□□□ 0.64
PCDH1-203ENST00000394536 LARP1Q6PKG0 1096 aaKnown RBP19.04■□□□□ 0.64
PCDH1-203ENST00000394536 RAB11FIP4Q86YS3 637 aa19.04■□□□□ 0.64
PCDH1-203ENST00000394536 CLIP2Q9UDT6 1046 aa19.04■□□□□ 0.64
PCDH1-203ENST00000394536 NCOA3Q9Y6Q9 1424 aa19.04■□□□□ 0.64
PCDH1-203ENST00000394536 KSR2Q6VAB6 950 aa19.04■□□□□ 0.64
PCDH1-203ENST00000394536 CFAP45Q9UL16 551 aa19.04■□□□□ 0.64
PCDH1-203ENST00000394536 AK9Q5TCS8 1911 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 TYRO3Q06418 890 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 NBPF6Q5VWK0 638 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 NBPF4Q96M43 638 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 ROBO2Q9HCK4 1378 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 ME3Q16798 604 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 VPS53Q5VIR6 699 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 RALYLQ86SE5 291 aaKnown RBP19.03■□□□□ 0.64
PCDH1-203ENST00000394536 CCAR2Q8N163 923 aaKnown RBP19.03■□□□□ 0.64
PCDH1-203ENST00000394536 BICC1Q9H694 974 aaKnown RBP19.03■□□□□ 0.64
PCDH1-203ENST00000394536 INO80Q9ULG1 1556 aaPredicted RBP19.03■□□□□ 0.64
PCDH1-203ENST00000394536 ATP7BP35670 1465 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 SBNO1A3KN83 1393 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 CCDC171Q6TFL3 1326 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 A0A0U1RQG5 324 aaPredicted RBP19.03■□□□□ 0.64
PCDH1-203ENST00000394536 IGSF3O75054 1194 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 LARGE1O95461 756 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 TNNT1P13805 278 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 COPS6Q7L5N1 327 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 FAM200AQ8TCP9 573 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 STAP2Q9UGK3 403 aa19.03■□□□□ 0.64
PCDH1-203ENST00000394536 A0A087WZG4 1122 aa19.02■□□□□ 0.64
PCDH1-203ENST00000394536 IL25Q9H293 177 aa19.02■□□□□ 0.64
PCDH1-203ENST00000394536 KIAA1210Q9ULL0 1709 aa19.02■□□□□ 0.64
PCDH1-203ENST00000394536 NEK1Q96PY6 1258 aa19.02■□□□□ 0.64
PCDH1-203ENST00000394536 HYPKQ9NX55 129 aa19.02■□□□□ 0.64
PCDH1-203ENST00000394536 PTPRMP28827 1452 aa19.02■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms