RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 GSE1Q14687 1217 aa17.95■□□□□ 0.46
HMGA1-203ENST00000374116 MVPQ14764 893 aaKnown RBP17.95■□□□□ 0.46
HMGA1-203ENST00000374116 HDGFL1Q5TGJ6 251 aa17.95■□□□□ 0.46
HMGA1-203ENST00000374116 DZIP1LQ8IYY4 767 aaKnown RBP17.95■□□□□ 0.46
HMGA1-203ENST00000374116 TEX13AQ9BXU3 409 aaPredicted RBP17.95■□□□□ 0.46
HMGA1-203ENST00000374116 LAMB4A4D0S4 1761 aa17.95■□□□□ 0.46
HMGA1-203ENST00000374116 CNTNAP4Q9C0A0 1308 aa17.95■□□□□ 0.46
HMGA1-203ENST00000374116 ATF7IPQ6VMQ6 1270 aa17.95■□□□□ 0.46
HMGA1-203ENST00000374116 ARXQ96QS3 562 aa17.95■□□□□ 0.46
HMGA1-203ENST00000374116 CICQ96RK0 1608 aaPredicted RBP17.95■□□□□ 0.46
HMGA1-203ENST00000374116 UBR3Q6ZT12 1888 aa17.94■□□□□ 0.46
HMGA1-203ENST00000374116 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.94■□□□□ 0.46
HMGA1-203ENST00000374116 CHPF2Q9P2E5 772 aa17.94■□□□□ 0.46
HMGA1-203ENST00000374116 PNPLA7Q6ZV29 1317 aa17.94■□□□□ 0.46
HMGA1-203ENST00000374116 RGS3P49796 1198 aa17.93■□□□□ 0.46
HMGA1-203ENST00000374116 FTSJ3Q8IY81 847 aaKnown RBP17.93■□□□□ 0.46
HMGA1-203ENST00000374116 NOB1Q9ULX3 412 aaKnown RBP17.93■□□□□ 0.46
HMGA1-203ENST00000374116 RTCBQ9Y3I0 505 aaKnown RBP17.93■□□□□ 0.46
HMGA1-203ENST00000374116 KIF16BQ96L93 1317 aa17.93■□□□□ 0.46
HMGA1-203ENST00000374116 SRCAPQ6ZRS2 3230 aa17.93■□□□□ 0.46
HMGA1-203ENST00000374116 PDIA6Q15084 440 aa17.93■□□□□ 0.46
HMGA1-203ENST00000374116 C8orf34Q49A92 452 aa17.93■□□□□ 0.46
HMGA1-203ENST00000374116 RC3H1Q5TC82 1133 aaKnown RBP17.93■□□□□ 0.46
HMGA1-203ENST00000374116 COL23A1Q86Y22 540 aaPredicted RBP17.93■□□□□ 0.46
HMGA1-203ENST00000374116 RPS6KA4O75676 772 aa17.92■□□□□ 0.46
HMGA1-203ENST00000374116 PCDHB15Q9Y5E8 787 aa17.92■□□□□ 0.46
HMGA1-203ENST00000374116 ARHGEF1Q92888 912 aaKnown RBP17.91■□□□□ 0.46
HMGA1-203ENST00000374116 RWDD1Q9H446 243 aaPredicted RBP17.91■□□□□ 0.46
HMGA1-203ENST00000374116 TBC1D2BQ9UPU7 963 aa17.91■□□□□ 0.46
HMGA1-203ENST00000374116 IPO8O15397 1037 aaKnown RBP17.91■□□□□ 0.46
HMGA1-203ENST00000374116 AIMP1Q12904 312 aaKnown RBP17.91■□□□□ 0.46
HMGA1-203ENST00000374116 SOS1Q07889 1333 aaPredicted RBP17.9■□□□□ 0.46
HMGA1-203ENST00000374116 TRAPPC3LQ5T215 181 aa17.9■□□□□ 0.46
HMGA1-203ENST00000374116 MRPL50Q8N5N7 158 aaKnown RBP17.9■□□□□ 0.46
HMGA1-203ENST00000374116 SRP68Q9UHB9 627 aaKnown RBP17.9■□□□□ 0.46
HMGA1-203ENST00000374116 COL15A1P39059 1388 aa17.89■□□□□ 0.45
HMGA1-203ENST00000374116 HOXB7P09629 217 aa17.89■□□□□ 0.45
HMGA1-203ENST00000374116 EIF5P55010 431 aaKnown RBP17.89■□□□□ 0.45
HMGA1-203ENST00000374116 ARHGAP45Q92619 1136 aa17.89■□□□□ 0.45
HMGA1-203ENST00000374116 PHAXQ9H814 394 aaKnown RBP17.89■□□□□ 0.45
HMGA1-203ENST00000374116 MSL1Q68DK7 614 aa17.88■□□□□ 0.45
HMGA1-203ENST00000374116 FAM43AQ8N2R8 423 aa17.88■□□□□ 0.45
HMGA1-203ENST00000374116 BRPF3Q9ULD4 1205 aa17.88■□□□□ 0.45
HMGA1-203ENST00000374116 DDX19BQ9UMR2 479 aa17.88■□□□□ 0.45
HMGA1-203ENST00000374116 TTLL7Q6ZT98 887 aa17.88■□□□□ 0.45
HMGA1-203ENST00000374116 LRP10Q7Z4F1 713 aa17.88■□□□□ 0.45
HMGA1-203ENST00000374116 C4AP0C0L4 1744 aa17.88■□□□□ 0.45
HMGA1-203ENST00000374116 ZBTB7AO95365 584 aa17.87■□□□□ 0.45
HMGA1-203ENST00000374116 SLC4A2P04920 1241 aa17.87■□□□□ 0.45
HMGA1-203ENST00000374116 SSFA2P28290 1259 aa17.87■□□□□ 0.45
HMGA1-203ENST00000374116 RFC4P35249 363 aa17.87■□□□□ 0.45
HMGA1-203ENST00000374116 IL6STP40189 918 aaPredicted RBP17.87■□□□□ 0.45
HMGA1-203ENST00000374116 CCDC30Q5VVM6 783 aa17.87■□□□□ 0.45
HMGA1-203ENST00000374116 COPS6Q7L5N1 327 aa17.86■□□□□ 0.45
HMGA1-203ENST00000374116 G2E3Q7L622 706 aa17.86■□□□□ 0.45
HMGA1-203ENST00000374116 DDX21Q9NR30 783 aaKnown RBP eCLIP17.86■□□□□ 0.45
HMGA1-203ENST00000374116 DBF4Q9UBU7 674 aaPredicted RBP17.86■□□□□ 0.45
HMGA1-203ENST00000374116 USPL1Q5W0Q7 1092 aa17.86■□□□□ 0.45
HMGA1-203ENST00000374116 DZIP3Q86Y13 1208 aaKnown RBP17.86■□□□□ 0.45
HMGA1-203ENST00000374116 TMEM57Q8N5G2 664 aa17.86■□□□□ 0.45
HMGA1-203ENST00000374116 XAGE3Q8WTP9 111 aa17.86■□□□□ 0.45
HMGA1-203ENST00000374116 STK31Q9BXU1 1019 aa17.85■□□□□ 0.45
HMGA1-203ENST00000374116 ZBTB3Q9H5J0 574 aa17.85■□□□□ 0.45
HMGA1-203ENST00000374116 ZBTB40Q9NUA8 1239 aa17.84■□□□□ 0.45
HMGA1-203ENST00000374116 ATF5Q9Y2D1 282 aaPredicted RBP17.84■□□□□ 0.45
HMGA1-203ENST00000374116 ITPRIPQ8IWB1 547 aa17.84■□□□□ 0.45
HMGA1-203ENST00000374116 ZPR1O75312 459 aa17.83■□□□□ 0.44
HMGA1-203ENST00000374116 HLFQ16534 295 aa17.83■□□□□ 0.44
HMGA1-203ENST00000374116 QSER1Q2KHR3 1735 aa17.83■□□□□ 0.44
HMGA1-203ENST00000374116 HMGB2P26583 209 aaKnown RBP17.82■□□□□ 0.44
HMGA1-203ENST00000374116 HDAC1Q13547 482 aaPredicted RBP17.82■□□□□ 0.44
HMGA1-203ENST00000374116 BCL2L12Q9HB09 334 aa17.82■□□□□ 0.44
HMGA1-203ENST00000374116 PDZRN3Q9UPQ7 1066 aa17.82■□□□□ 0.44
HMGA1-203ENST00000374116 ERBB4Q15303 1308 aa17.82■□□□□ 0.44
HMGA1-203ENST00000374116 USP42Q9H9J4 1324 aaKnown RBP17.82■□□□□ 0.44
HMGA1-203ENST00000374116 CASZ1Q86V15 1759 aa17.82■□□□□ 0.44
HMGA1-203ENST00000374116 GYS1P13807 737 aa17.82■□□□□ 0.44
HMGA1-203ENST00000374116 ADRA2BP18089 450 aa17.82■□□□□ 0.44
HMGA1-203ENST00000374116 NFKBIBQ15653 356 aa17.82■□□□□ 0.44
HMGA1-203ENST00000374116 BICDL1Q6ZP65 573 aa17.82■□□□□ 0.44
HMGA1-203ENST00000374116 HYPKQ9NX55 129 aa17.82■□□□□ 0.44
HMGA1-203ENST00000374116 NARFQ9UHQ1 456 aa17.82■□□□□ 0.44
HMGA1-203ENST00000374116 ABCC4O15439 1325 aa17.81■□□□□ 0.44
HMGA1-203ENST00000374116 CAMTA2O94983 1202 aa17.81■□□□□ 0.44
HMGA1-203ENST00000374116 FLAD1Q8NFF5 587 aa17.81■□□□□ 0.44
HMGA1-203ENST00000374116 KIF6Q6ZMV9 814 aa17.79■□□□□ 0.44
HMGA1-203ENST00000374116 CHMP4BQ9H444 224 aaKnown RBP17.79■□□□□ 0.44
HMGA1-203ENST00000374116 A0A087WZG4 1122 aa17.79■□□□□ 0.44
HMGA1-203ENST00000374116 ZBTB7BO15156 539 aaPredicted RBP17.79■□□□□ 0.44
HMGA1-203ENST00000374116 FLIIQ13045 1269 aa17.79■□□□□ 0.44
HMGA1-203ENST00000374116 MAP3K15Q6ZN16 1313 aa17.78■□□□□ 0.44
HMGA1-203ENST00000374116 TBC1D9BQ66K14 1250 aa17.78■□□□□ 0.44
HMGA1-203ENST00000374116 F6X3S4 739 aa17.77■□□□□ 0.44
HMGA1-203ENST00000374116 FKBP5Q13451 457 aaPredicted RBP17.77■□□□□ 0.44
HMGA1-203ENST00000374116 ANKRD13DQ6ZTN6 518 aa17.77■□□□□ 0.44
HMGA1-203ENST00000374116 NUP98P52948 1817 aa17.77■□□□□ 0.43
HMGA1-203ENST00000374116 FAM177BA6PVY3 158 aa17.77■□□□□ 0.43
HMGA1-203ENST00000374116 GPTP24298 496 aa17.77■□□□□ 0.43
HMGA1-203ENST00000374116 API5Q9BZZ5 524 aaKnown RBP17.77■□□□□ 0.43
HMGA1-203ENST00000374116 SCN7AQ01118 1682 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 236.3 ms