RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 C9orf131Q5VYM1 1079 aa28.51■■■□□ 2.15
CCDC28B-201ENST00000373602 ST5P78524 1137 aa28.5■■■□□ 2.15
CCDC28B-201ENST00000373602 NPHP1O15259 732 aa28.49■■■□□ 2.15
CCDC28B-201ENST00000373602 NEUROD2Q15784 382 aa28.49■■■□□ 2.15
CCDC28B-201ENST00000373602 HLFQ16534 295 aa28.48■■■□□ 2.15
CCDC28B-201ENST00000373602 NBPF5PQ86XG9 351 aaPredicted RBP28.48■■■□□ 2.15
CCDC28B-201ENST00000373602 NIP7Q9Y221 180 aaKnown RBP eCLIP28.48■■■□□ 2.15
CCDC28B-201ENST00000373602 ERBB4Q15303 1308 aa28.47■■■□□ 2.15
CCDC28B-201ENST00000373602 NGEFQ8N5V2 710 aa28.47■■■□□ 2.15
CCDC28B-201ENST00000373602 ZNF622Q969S3 477 aaKnown RBP eCLIP28.47■■■□□ 2.159e-11■■■■□ 21.4
CCDC28B-201ENST00000373602 TRIM35Q9UPQ4 493 aa28.47■■■□□ 2.15
CCDC28B-201ENST00000373602 ERVV-1B6SEH8 477 aa28.46■■■□□ 2.15
CCDC28B-201ENST00000373602 COL11A2P13942 1736 aaPredicted RBP28.46■■■□□ 2.15
CCDC28B-201ENST00000373602 RNF181Q9P0P0 153 aa28.45■■■□□ 2.14
CCDC28B-201ENST00000373602 MYL6BP14649 208 aa28.44■■■□□ 2.14
CCDC28B-201ENST00000373602 TPTE2Q6XPS3 522 aa28.44■■■□□ 2.14
CCDC28B-201ENST00000373602 TTLL7Q6ZT98 887 aa28.44■■■□□ 2.14
CCDC28B-201ENST00000373602 SBF1O95248 1867 aa28.44■■■□□ 2.14
CCDC28B-201ENST00000373602 MAP3K15Q6ZN16 1313 aa28.43■■■□□ 2.14
CCDC28B-201ENST00000373602 KIF3CO14782 793 aa28.43■■■□□ 2.14
CCDC28B-201ENST00000373602 SENP3-EIF4A1A0A087X0R7 540 aa28.42■■■□□ 2.14
CCDC28B-201ENST00000373602 CHL1O00533 1208 aa28.42■■■□□ 2.14
CCDC28B-201ENST00000373602 SRGNP10124 158 aa28.42■■■□□ 2.14
CCDC28B-201ENST00000373602 RASSF7Q02833 373 aa28.42■■■□□ 2.14
CCDC28B-201ENST00000373602 STYK1Q6J9G0 422 aa28.42■■■□□ 2.14
CCDC28B-201ENST00000373602 KIF6Q6ZMV9 814 aa28.42■■■□□ 2.14
CCDC28B-201ENST00000373602 CNKSR1Q969H4 720 aa28.41■■■□□ 2.14
CCDC28B-201ENST00000373602 MASTLQ96GX5 879 aa28.41■■■□□ 2.14
CCDC28B-201ENST00000373602 EIF2S2P20042 333 aaKnown RBP28.4■■■□□ 2.14
CCDC28B-201ENST00000373602 KLRG2A4D1S0 409 aaPredicted RBP28.39■■■□□ 2.14
CCDC28B-201ENST00000373602 PDIA6Q15084 440 aa28.39■■■□□ 2.14
CCDC28B-201ENST00000373602 LRP10Q7Z4F1 713 aa28.39■■■□□ 2.14
CCDC28B-201ENST00000373602 NUP98P52948 1817 aa28.39■■■□□ 2.13
CCDC28B-201ENST00000373602 FAM177BA6PVY3 158 aa28.38■■■□□ 2.13
CCDC28B-201ENST00000373602 NFKBIEO00221 500 aa28.38■■■□□ 2.13
CCDC28B-201ENST00000373602 LMNB1P20700 586 aa28.38■■■□□ 2.13
CCDC28B-201ENST00000373602 PRELPP51888 382 aa28.38■■■□□ 2.13
CCDC28B-201ENST00000373602 ZBTB3Q9H5J0 574 aa28.38■■■□□ 2.13
CCDC28B-201ENST00000373602 C21orf2O43822 256 aa28.37■■■□□ 2.13
CCDC28B-201ENST00000373602 LAS1LQ9Y4W2 734 aaKnown RBP28.37■■■□□ 2.13
CCDC28B-201ENST00000373602 NMRK2Q9NPI5 230 aa28.36■■■□□ 2.13
CCDC28B-201ENST00000373602 ZNF219Q9P2Y4 722 aaPredicted RBP28.36■■■□□ 2.13
CCDC28B-201ENST00000373602 ZC3H4Q9UPT8 1303 aaKnown RBP28.36■■■□□ 2.13
CCDC28B-201ENST00000373602 NPR1P16066 1061 aa28.35■■■□□ 2.13
CCDC28B-201ENST00000373602 PROSER3Q2NL68 480 aa28.35■■■□□ 2.13
CCDC28B-201ENST00000373602 PRPF40BQ6NWY9 871 aaKnown RBP28.35■■■□□ 2.13
CCDC28B-201ENST00000373602 NYXQ9GZU5 481 aa28.35■■■□□ 2.13
CCDC28B-201ENST00000373602 SLX4Q8IY92 1834 aa28.34■■■□□ 2.13
CCDC28B-201ENST00000373602 APAF1O14727 1248 aa28.34■■■□□ 2.13
CCDC28B-201ENST00000373602 GTF2E1P29083 439 aaPredicted RBP28.34■■■□□ 2.13
CCDC28B-201ENST00000373602 KRT24Q2M2I5 525 aa28.34■■■□□ 2.13
CCDC28B-201ENST00000373602 GIGYF2Q6Y7W6 1299 aaKnown RBP28.34■■■□□ 2.13
CCDC28B-201ENST00000373602 ZNF34Q8IZ26 560 aa28.34■■■□□ 2.13
CCDC28B-201ENST00000373602 ARFGEF2Q9Y6D5 1785 aa28.34■■■□□ 2.13
CCDC28B-201ENST00000373602 ANXA1P04083 346 aa28.33■■■□□ 2.13
CCDC28B-201ENST00000373602 CFAP44Q96MT7 982 aa28.33■■■□□ 2.13
CCDC28B-201ENST00000373602 KDM2BQ8NHM5 1336 aa28.33■■■□□ 2.13
CCDC28B-201ENST00000373602 IBTKQ9P2D0 1353 aaPredicted RBP28.33■■■□□ 2.13
CCDC28B-201ENST00000373602 GPTP24298 496 aa28.32■■■□□ 2.12
CCDC28B-201ENST00000373602 UBN2Q6ZU65 1347 aa28.32■■■□□ 2.12
CCDC28B-201ENST00000373602 FER1L6Q2WGJ9 1857 aa28.32■■■□□ 2.12
CCDC28B-201ENST00000373602 ZNF316A6NFI3 1004 aaPredicted RBP28.31■■■□□ 2.12
CCDC28B-201ENST00000373602 SOGA3Q5TF21 947 aa28.31■■■□□ 2.12
CCDC28B-201ENST00000373602 NECTIN2Q92692 538 aa28.31■■■□□ 2.12
CCDC28B-201ENST00000373602 ABCC12Q96J65 1359 aa28.3■■■□□ 2.12
CCDC28B-201ENST00000373602 LTBP3Q9NS15 1303 aa28.3■■■□□ 2.12
CCDC28B-201ENST00000373602 CCDC184Q52MB2 194 aa28.3■■■□□ 2.12
CCDC28B-201ENST00000373602 NUTM1Q86Y26 1132 aa28.3■■■□□ 2.12
CCDC28B-201ENST00000373602 C7orf43Q8WVR3 580 aa28.3■■■□□ 2.12
CCDC28B-201ENST00000373602 CACNA1SQ13698 1873 aa28.29■■■□□ 2.12
CCDC28B-201ENST00000373602 TOMM70O94826 608 aa28.29■■■□□ 2.12
CCDC28B-201ENST00000373602 HOXB7P09629 217 aa28.29■■■□□ 2.12
CCDC28B-201ENST00000373602 ERFEQ4G0M1 354 aa28.29■■■□□ 2.12
CCDC28B-201ENST00000373602 SUSD4Q5VX71 490 aa28.29■■■□□ 2.12
CCDC28B-201ENST00000373602 DDX21Q9NR30 783 aaKnown RBP eCLIP28.29■■■□□ 2.12
CCDC28B-201ENST00000373602 CCDC88AQ3V6T2 1871 aa28.29■■■□□ 2.12
CCDC28B-201ENST00000373602 ZNF853P0CG23 659 aa28.28■■■□□ 2.12
CCDC28B-201ENST00000373602 COPS6Q7L5N1 327 aa28.28■■■□□ 2.12
CCDC28B-201ENST00000373602 TAOK3Q9H2K8 898 aa28.28■■■□□ 2.12
CCDC28B-201ENST00000373602 RIC1Q4ADV7 1423 aa28.27■■■□□ 2.12
CCDC28B-201ENST00000373602 TNRC6CQ9HCJ0 1690 aaKnown RBP28.27■■■□□ 2.12
CCDC28B-201ENST00000373602 CRY2Q49AN0 593 aa28.27■■■□□ 2.12
CCDC28B-201ENST00000373602 PARP10Q53GL7 1025 aa28.27■■■□□ 2.12
CCDC28B-201ENST00000373602 XAGE3Q8WTP9 111 aa28.27■■■□□ 2.12
CCDC28B-201ENST00000373602 MBIPQ9NS73 344 aa28.27■■■□□ 2.12
CCDC28B-201ENST00000373602 NTSR2O95665 410 aa28.26■■■□□ 2.11
CCDC28B-201ENST00000373602 ALDH1B1P30837 517 aa28.26■■■□□ 2.11
CCDC28B-201ENST00000373602 GLTPD2A6NH11 291 aa28.25■■■□□ 2.11
CCDC28B-201ENST00000373602 HSPA6P17066 643 aa28.25■■■□□ 2.11
CCDC28B-201ENST00000373602 CALD1Q05682 793 aaKnown RBP28.25■■■□□ 2.11
CCDC28B-201ENST00000373602 HDGFL1Q5TGJ6 251 aa28.25■■■□□ 2.11
CCDC28B-201ENST00000373602 PPP1R42Q7Z4L9 355 aa28.25■■■□□ 2.11
CCDC28B-201ENST00000373602 RRAGCQ9HB90 399 aa28.25■■■□□ 2.11
CCDC28B-201ENST00000373602 IFT57Q9NWB7 429 aa28.25■■■□□ 2.11
CCDC28B-201ENST00000373602 CHPF2Q9P2E5 772 aa28.25■■■□□ 2.11
CCDC28B-201ENST00000373602 TIAM2Q8IVF5 1701 aa28.25■■■□□ 2.11
CCDC28B-201ENST00000373602 AIMP1Q12904 312 aaKnown RBP28.24■■■□□ 2.11
CCDC28B-201ENST00000373602 CCDC93Q567U6 631 aa28.24■■■□□ 2.11
CCDC28B-201ENST00000373602 GNAI1P63096 354 aa28.23■■■□□ 2.11
CCDC28B-201ENST00000373602 DUSP27Q5VZP5 1158 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms