RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 DIAPH3Q9NSV4 1193 aa19.65■□□□□ 0.74
SDC4-201ENST00000372733 PLEKHG1Q9ULL1 1385 aa19.65■□□□□ 0.74
SDC4-201ENST00000372733 KDM4AO75164 1064 aa19.64■□□□□ 0.73
SDC4-201ENST00000372733 JAKMIP1Q96N16 626 aaKnown RBP19.64■□□□□ 0.73
SDC4-201ENST00000372733 MTMR6Q9Y217 621 aa19.64■□□□□ 0.73
SDC4-201ENST00000372733 CRYBG1Q9Y4K1 1723 aa19.64■□□□□ 0.73
SDC4-201ENST00000372733 AP5Z1O43299 807 aa19.64■□□□□ 0.73
SDC4-201ENST00000372733 OS9Q13438 667 aaPredicted RBP19.64■□□□□ 0.73
SDC4-201ENST00000372733 ANXA1P04083 346 aa19.63■□□□□ 0.73
SDC4-201ENST00000372733 PRPF40BQ6NWY9 871 aaKnown RBP19.63■□□□□ 0.73
SDC4-201ENST00000372733 CHPF2Q9P2E5 772 aa19.63■□□□□ 0.73
SDC4-201ENST00000372733 ATP6V1DQ9Y5K8 247 aa19.63■□□□□ 0.73
SDC4-201ENST00000372733 RGPD8O14715 1765 aaPredicted RBP19.63■□□□□ 0.73
SDC4-201ENST00000372733 ST3GAL1Q11201 340 aa19.63■□□□□ 0.73
SDC4-201ENST00000372733 PI4KAP2A4QPH2 592 aa19.62■□□□□ 0.73
SDC4-201ENST00000372733 VPS37CA5D8V6 355 aaPredicted RBP19.62■□□□□ 0.73
SDC4-201ENST00000372733 BEND3Q5T5X7 828 aa19.62■□□□□ 0.73
SDC4-201ENST00000372733 PI4KAP1Q8N8J0 262 aa19.62■□□□□ 0.73
SDC4-201ENST00000372733 PDRG1Q9NUG6 133 aa19.62■□□□□ 0.73
SDC4-201ENST00000372733 AMOTL2Q9Y2J4 779 aa19.62■□□□□ 0.73
SDC4-201ENST00000372733 GLRX3O76003 335 aaKnown RBP19.61■□□□□ 0.73
SDC4-201ENST00000372733 DNAAF4Q8WXU2 420 aa19.61■□□□□ 0.73
SDC4-201ENST00000372733 PRIMPOLQ96LW4 560 aa19.61■□□□□ 0.73
SDC4-201ENST00000372733 BABAM1Q9NWV8 329 aa19.61■□□□□ 0.73
SDC4-201ENST00000372733 DIP2AQ14689 1571 aa19.61■□□□□ 0.73
SDC4-201ENST00000372733 FAM177BA6PVY3 158 aa19.61■□□□□ 0.73
SDC4-201ENST00000372733 ZNF710Q8N1W2 664 aa19.61■□□□□ 0.73
SDC4-201ENST00000372733 USP42Q9H9J4 1324 aaKnown RBP19.61■□□□□ 0.73
SDC4-201ENST00000372733 NECAB1Q8N987 351 aa19.6■□□□□ 0.73
SDC4-201ENST00000372733 SPTLC3Q9NUV7 552 aa19.6■□□□□ 0.73
SDC4-201ENST00000372733 VPS53Q5VIR6 699 aa19.59■□□□□ 0.73
SDC4-201ENST00000372733 KCNF1Q9H3M0 494 aa19.59■□□□□ 0.73
SDC4-201ENST00000372733 TTC41PQ6P2S7 1318 aa19.59■□□□□ 0.73
SDC4-201ENST00000372733 KCNQ3O43525 872 aa19.59■□□□□ 0.73
SDC4-201ENST00000372733 ME3Q16798 604 aa19.59■□□□□ 0.73
SDC4-201ENST00000372733 CYP46A1Q9Y6A2 500 aa19.59■□□□□ 0.73
SDC4-201ENST00000372733 EIF4A1P60842 406 aaKnown RBP19.58■□□□□ 0.73
SDC4-201ENST00000372733 SPC24Q8NBT2 197 aa19.58■□□□□ 0.73
SDC4-201ENST00000372733 PYCARDQ9ULZ3 195 aa19.58■□□□□ 0.73
SDC4-201ENST00000372733 HMGN5P82970 282 aaKnown RBP19.58■□□□□ 0.72
SDC4-201ENST00000372733 COL9A3Q14050 684 aaPredicted RBP19.58■□□□□ 0.72
SDC4-201ENST00000372733 HSP90AB4PQ58FF6 505 aa19.58■□□□□ 0.72
SDC4-201ENST00000372733 RUFY2Q8WXA3 655 aa19.58■□□□□ 0.72
SDC4-201ENST00000372733 ZSWIM6Q9HCJ5 1215 aa19.58■□□□□ 0.72
SDC4-201ENST00000372733 PA2G4Q9UQ80 394 aaKnown RBP19.58■□□□□ 0.72
SDC4-201ENST00000372733 ADCY9O60503 1353 aa19.58■□□□□ 0.72
SDC4-201ENST00000372733 LGR6Q9HBX8 967 aa19.57■□□□□ 0.72
SDC4-201ENST00000372733 CHMP3Q9Y3E7 222 aa19.57■□□□□ 0.72
SDC4-201ENST00000372733 CLASRPQ8N2M8 674 aaKnown RBP19.57■□□□□ 0.72
SDC4-201ENST00000372733 PRDM10Q9NQV6 1147 aa19.57■□□□□ 0.72
SDC4-201ENST00000372733 SH2B1Q9NRF2 756 aaPredicted RBP19.57■□□□□ 0.72
SDC4-201ENST00000372733 MARF1Q9Y4F3 1742 aaKnown RBP19.57■□□□□ 0.72
SDC4-201ENST00000372733 CEMIPQ8WUJ3 1361 aa19.56■□□□□ 0.72
SDC4-201ENST00000372733 FERMT3Q86UX7 667 aa19.56■□□□□ 0.72
SDC4-201ENST00000372733 CCDC94Q9BW85 323 aaPredicted RBP19.56■□□□□ 0.72
SDC4-201ENST00000372733 ECHDC1Q9NTX5 307 aa19.56■□□□□ 0.72
SDC4-201ENST00000372733 GTF2F1P35269 517 aaKnown RBP eCLIP19.56■□□□□ 0.72
SDC4-201ENST00000372733 FAM173BQ6P4H8 233 aa19.56■□□□□ 0.72
SDC4-201ENST00000372733 ZSCAN31Q96LW9 406 aaPredicted RBP19.56■□□□□ 0.72
SDC4-201ENST00000372733 CCDC171Q6TFL3 1326 aa19.56■□□□□ 0.72
SDC4-201ENST00000372733 TTC6Q86TZ1 520 aa19.55■□□□□ 0.72
SDC4-201ENST00000372733 PRDM4Q9UKN5 801 aa19.55■□□□□ 0.72
SDC4-201ENST00000372733 TPCN1Q9ULQ1 816 aa19.55■□□□□ 0.72
SDC4-201ENST00000372733 CDC37L1Q7L3B6 337 aa19.55■□□□□ 0.72
SDC4-201ENST00000372733 TM6SF1Q9BZW5 370 aa19.55■□□□□ 0.72
SDC4-201ENST00000372733 RBM8AQ9Y5S9 174 aaKnown RBP19.55■□□□□ 0.72
SDC4-201ENST00000372733 KIAA1524Q8TCG1 905 aa19.55■□□□□ 0.72
SDC4-201ENST00000372733 FAM227BQ96M60 508 aa19.55■□□□□ 0.72
SDC4-201ENST00000372733 IFIT2P09913 472 aaKnown RBP19.54■□□□□ 0.72
SDC4-201ENST00000372733 CCDC192P0DO97 292 aa19.54■□□□□ 0.72
SDC4-201ENST00000372733 NECTIN1Q15223 517 aa19.54■□□□□ 0.72
SDC4-201ENST00000372733 ABTB2Q8N961 1025 aa19.54■□□□□ 0.72
SDC4-201ENST00000372733 KCNB2Q92953 911 aa19.54■□□□□ 0.72
SDC4-201ENST00000372733 LIG1P18858 919 aa19.54■□□□□ 0.72
SDC4-201ENST00000372733 KCNJ4P48050 445 aa19.54■□□□□ 0.72
SDC4-201ENST00000372733 CREB3L3Q68CJ9 461 aa19.54■□□□□ 0.72
SDC4-201ENST00000372733 C14orf37Q86TY3 774 aa19.54■□□□□ 0.72
SDC4-201ENST00000372733 TCEANC2Q96MN5 208 aa19.54■□□□□ 0.72
SDC4-201ENST00000372733 KIF3AQ9Y496 699 aa19.54■□□□□ 0.72
SDC4-201ENST00000372733 MED1Q15648 1581 aaPredicted RBP19.53■□□□□ 0.72
SDC4-201ENST00000372733 CAMK4Q16566 473 aa19.53■□□□□ 0.72
SDC4-201ENST00000372733 AACSQ86V21 672 aa19.53■□□□□ 0.72
SDC4-201ENST00000372733 SMAP1Q8IYB5 467 aaPredicted RBP19.53■□□□□ 0.72
SDC4-201ENST00000372733 MTX1Q13505 466 aa19.53■□□□□ 0.72
SDC4-201ENST00000372733 LARP1BQ659C4 914 aaKnown RBP19.53■□□□□ 0.72
SDC4-201ENST00000372733 GPATCH3Q96I76 525 aa19.53■□□□□ 0.72
SDC4-201ENST00000372733 ZKSCAN1P17029 563 aaPredicted RBP19.52■□□□□ 0.72
SDC4-201ENST00000372733 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.52■□□□□ 0.72
SDC4-201ENST00000372733 KRT85P78386 507 aa19.52■□□□□ 0.71
SDC4-201ENST00000372733 NMIQ13287 307 aaPredicted RBP19.52■□□□□ 0.71
SDC4-201ENST00000372733 C9orf78Q9NZ63 289 aaPredicted RBP19.52■□□□□ 0.71
SDC4-201ENST00000372733 EVI5LQ96CN4 794 aa19.51■□□□□ 0.71
SDC4-201ENST00000372733 NUP62CLQ9H1M0 184 aa19.51■□□□□ 0.71
SDC4-201ENST00000372733 BCL2L12Q9HB09 334 aa19.51■□□□□ 0.71
SDC4-201ENST00000372733 EID1Q9Y6B2 187 aa19.51■□□□□ 0.71
SDC4-201ENST00000372733 KDM3BQ7LBC6 1761 aa19.51■□□□□ 0.71
SDC4-201ENST00000372733 HOXB7P09629 217 aa19.51■□□□□ 0.71
SDC4-201ENST00000372733 CEBPAP49715 358 aaPredicted RBP19.51■□□□□ 0.71
SDC4-201ENST00000372733 MAP3K11Q16584 847 aa19.51■□□□□ 0.71
SDC4-201ENST00000372733 LUZP1Q86V48 1076 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms