RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 KANK3Q6NY19 840 aa8.4□□□□□ -1.06
SYNE1-208ENST00000367256 NCAPD3P42695 1498 aa8.4□□□□□ -1.06
SYNE1-208ENST00000367256 CKAP2LQ8IYA6 745 aa8.4□□□□□ -1.07
SYNE1-208ENST00000367256 SEPT6Q14141 434 aa8.4□□□□□ -1.07
SYNE1-208ENST00000367256 CCDC96Q2M329 555 aa8.4□□□□□ -1.07
SYNE1-208ENST00000367256 NUTM1Q86Y26 1132 aa8.4□□□□□ -1.07
SYNE1-208ENST00000367256 DRC1Q96MC2 740 aa8.4□□□□□ -1.07
SYNE1-208ENST00000367256 SSX2IPQ9Y2D8 614 aa8.4□□□□□ -1.07
SYNE1-208ENST00000367256 MXRA7P84157 204 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 SPTY2D1Q68D10 685 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 NAP1L3Q99457 506 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 ARFGAP3Q9NP61 516 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 TRMT1Q9NXH9 659 aaKnown RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 SSRP1Q08945 709 aaKnown RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 CEP135Q66GS9 1140 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 ANKIB1Q9P2G1 1089 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 V9GYY5 206 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 CCDC194A0A1B0GVG4 234 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 CRACR2BQ8N4Y2 399 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 IQCGQ9H095 443 aaKnown RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 SULT6B1Q6IMI4 303 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 DAAM2Q86T65 1068 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 TBC1D2Q9BYX2 928 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 HMGB2P26583 209 aaKnown RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 TOM1L2Q6ZVM7 507 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 STMN4Q9H169 189 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 CCDC40Q4G0X9 1142 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 PRAM1Q96QH2 718 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 CEP126Q9P2H0 1117 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 KIF4AO95239 1232 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 POLR3DP05423 398 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 MTIF2P46199 727 aaKnown RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 AEBP2Q6ZN18 517 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 CTCFLQ8NI51 663 aaPredicted RBP8.39□□□□□ -1.07
SYNE1-208ENST00000367256 TBC1D32Q96NH3 1257 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 AKAP2Q9Y2D5 859 aa8.39□□□□□ -1.07
SYNE1-208ENST00000367256 KIF14Q15058 1648 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 RAB3IL1Q8TBN0 382 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 RALGAPBQ86X10 1494 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 CCDC160A6NGH7 325 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 ADCY5O95622 1261 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 METTL24Q5JXM2 366 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 CNNM3Q8NE01 707 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 CCDC12Q8WUD4 166 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-208ENST00000367256 NAPBQ9H115 298 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 HYPKQ9NX55 129 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 NCOA1Q15788 1441 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 APBB1IPQ7Z5R6 666 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-208ENST00000367256 HMG20BQ9P0W2 317 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 TROQ12816 1431 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-208ENST00000367256 CCDC94Q9BW85 323 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-208ENST00000367256 GTF2A1P52655 376 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-208ENST00000367256 NFE2L2Q16236 605 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 DZIP1Q86YF9 867 aaKnown RBP8.38□□□□□ -1.07
SYNE1-208ENST00000367256 FSIP1Q8NA03 581 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 ACTN2P35609 894 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 IFI16Q16666 785 aaKnown RBP8.38□□□□□ -1.07
SYNE1-208ENST00000367256 GRIN2BQ13224 1484 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 TTC21AQ8NDW8 1320 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 CC2D2AQ9P2K1 1620 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 CCDC155Q8N6L0 562 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 FBF1Q8TES7 1133 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 SYNCQ9H7C4 482 aa8.38□□□□□ -1.07
SYNE1-208ENST00000367256 PUF60Q9UHX1 559 aaKnown RBP8.38□□□□□ -1.07
SYNE1-208ENST00000367256 RTEL1-TNFRSF6BF6WH68 1400 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 SF3B2Q13435 895 aaKnown RBP8.37□□□□□ -1.07
SYNE1-208ENST00000367256 CPLX3Q8WVH0 158 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 TBC1D5Q92609 795 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 ANAPC4Q9UJX5 808 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 USP25Q9UHP3 1055 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 NSD3Q9BZ95 1437 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 CCDC6Q16204 474 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 ATP2C2O75185 946 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 CATIPQ7Z7H3 387 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 CALML4Q96GE6 196 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 PAIP2Q9BPZ3 127 aaKnown RBP8.37□□□□□ -1.07
SYNE1-208ENST00000367256 ZSCAN16Q9H4T2 348 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-208ENST00000367256 NOL3O60936 208 aaKnown RBP8.37□□□□□ -1.07
SYNE1-208ENST00000367256 IL1RAPL2Q9NP60 686 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 LRSAM1Q6UWE0 723 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 PRXQ9BXM0 1461 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 CFAP65Q6ZU64 1925 aaKnown RBP8.37□□□□□ -1.07
SYNE1-208ENST00000367256 MINDY4BA8MYZ0 360 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 BAG4O95429 457 aaKnown RBP8.37□□□□□ -1.07
SYNE1-208ENST00000367256 NOP2P46087 812 aaKnown RBP8.37□□□□□ -1.07
SYNE1-208ENST00000367256 CAVIN4Q5BKX8 364 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 DDX54Q8TDD1 881 aaKnown RBP8.37□□□□□ -1.07
SYNE1-208ENST00000367256 CCDC85AQ96PX6 553 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-208ENST00000367256 PTPRCP08575 1304 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 TTC12Q9H892 705 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-208ENST00000367256 EXOC1Q9NV70 894 aa8.37□□□□□ -1.07
SYNE1-208ENST00000367256 A6NNZ2 444 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 TERF1P54274 439 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 TUBB8Q3ZCM7 444 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 SYCP3Q8IZU3 236 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 CDK19Q9BWU1 502 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 EIF2AK4Q9P2K8 1649 aaKnown RBP8.36□□□□□ -1.07
SYNE1-208ENST00000367256 AMPD3Q01432 767 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 BICDL1Q6ZP65 573 aa8.36□□□□□ -1.07
SYNE1-208ENST00000367256 STXBP4Q6ZWJ1 553 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms