RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 AKAP4Q5JQC9 854 aa11.66□□□□□ -0.54
ATG4A-202ENST00000345734 MPRIPQ6WCQ1 1025 aa11.66□□□□□ -0.54
ATG4A-202ENST00000345734 NLRP2Q9NX02 1062 aa11.66□□□□□ -0.54
ATG4A-202ENST00000345734 SOS2Q07890 1332 aaPredicted RBP11.66□□□□□ -0.54
ATG4A-202ENST00000345734 PHF14O94880 888 aa11.65□□□□□ -0.54
ATG4A-202ENST00000345734 AMOTQ4VCS5 1084 aa11.65□□□□□ -0.54
ATG4A-202ENST00000345734 G2E3Q7L622 706 aa11.65□□□□□ -0.54
ATG4A-202ENST00000345734 C1orf115Q9H7X2 142 aa11.65□□□□□ -0.54
ATG4A-202ENST00000345734 PDZRN3Q9UPQ7 1066 aa11.65□□□□□ -0.54
ATG4A-202ENST00000345734 FAM208AQ9UK61 1670 aaKnown RBP11.65□□□□□ -0.54
ATG4A-202ENST00000345734 HDAC1Q13547 482 aaPredicted RBP11.65□□□□□ -0.55
ATG4A-202ENST00000345734 NECTIN2Q92692 538 aa11.65□□□□□ -0.55
ATG4A-202ENST00000345734 BABAM1Q9NWV8 329 aa11.65□□□□□ -0.55
ATG4A-202ENST00000345734 KDM3BQ7LBC6 1761 aa11.64□□□□□ -0.55
ATG4A-202ENST00000345734 SLAIN1Q8ND83 568 aa11.64□□□□□ -0.55
ATG4A-202ENST00000345734 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.64□□□□□ -0.55
ATG4A-202ENST00000345734 CACNA1FO60840 1977 aa11.64□□□□□ -0.55
ATG4A-202ENST00000345734 KCNQ3O43525 872 aa11.63□□□□□ -0.55
ATG4A-202ENST00000345734 CSB-PGBD3P0DP91 1061 aa11.63□□□□□ -0.55
ATG4A-202ENST00000345734 C1orf141Q5JVX7 400 aa11.63□□□□□ -0.55
ATG4A-202ENST00000345734 CPDO75976 1380 aa11.63□□□□□ -0.55
ATG4A-202ENST00000345734 RNMTO43148 476 aaKnown RBP11.63□□□□□ -0.55
ATG4A-202ENST00000345734 PTPRCP08575 1304 aa11.63□□□□□ -0.55
ATG4A-202ENST00000345734 HOMEZQ8IX15 550 aa11.63□□□□□ -0.55
ATG4A-202ENST00000345734 KHSRPQ92945 711 aaKnown RBP eCLIP11.63□□□□□ -0.55
ATG4A-202ENST00000345734 TEFQ10587 303 aa11.62□□□□□ -0.55
ATG4A-202ENST00000345734 INTS3Q68E01 1043 aaKnown RBP11.62□□□□□ -0.55
ATG4A-202ENST00000345734 ZMYND15Q9H091 742 aa11.62□□□□□ -0.55
ATG4A-202ENST00000345734 NHSL1Q5SYE7 1610 aa11.62□□□□□ -0.55
ATG4A-202ENST00000345734 MEGF6O75095 1541 aa11.62□□□□□ -0.55
ATG4A-202ENST00000345734 ABCC6O95255 1503 aa11.62□□□□□ -0.55
ATG4A-202ENST00000345734 C8orf34Q49A92 452 aa11.62□□□□□ -0.55
ATG4A-202ENST00000345734 RAPGEF4Q8WZA2 1011 aa11.62□□□□□ -0.55
ATG4A-202ENST00000345734 ABCA3Q99758 1704 aa11.61□□□□□ -0.55
ATG4A-202ENST00000345734 SIPA1L3O60292 1781 aaPredicted RBP11.61□□□□□ -0.55
ATG4A-202ENST00000345734 BTBD11A6QL63 1104 aa11.61□□□□□ -0.55
ATG4A-202ENST00000345734 EIF4A1P60842 406 aaKnown RBP11.61□□□□□ -0.55
ATG4A-202ENST00000345734 CCDC30Q5VVM6 783 aa11.61□□□□□ -0.55
ATG4A-202ENST00000345734 EPAS1Q99814 870 aa11.61□□□□□ -0.55
ATG4A-202ENST00000345734 STK31Q9BXU1 1019 aa11.61□□□□□ -0.55
ATG4A-202ENST00000345734 F6X3S4 739 aa11.6□□□□□ -0.55
ATG4A-202ENST00000345734 SMC5Q8IY18 1101 aa11.6□□□□□ -0.55
ATG4A-202ENST00000345734 CHMP4BQ9H444 224 aaKnown RBP11.6□□□□□ -0.55
ATG4A-202ENST00000345734 PRDM11Q9NQV5 511 aa11.6□□□□□ -0.55
ATG4A-202ENST00000345734 TATP17735 454 aaPredicted RBP11.6□□□□□ -0.55
ATG4A-202ENST00000345734 NPM2Q86SE8 214 aaKnown RBP11.6□□□□□ -0.55
ATG4A-202ENST00000345734 SIRT2Q8IXJ6 389 aa11.6□□□□□ -0.55
ATG4A-202ENST00000345734 ADAMTS7Q9UKP4 1686 aa11.6□□□□□ -0.55
ATG4A-202ENST00000345734 SCN11AQ9UI33 1791 aa11.59□□□□□ -0.55
ATG4A-202ENST00000345734 FLIIQ13045 1269 aa11.59□□□□□ -0.55
ATG4A-202ENST00000345734 POTEHQ6S545 545 aa11.59□□□□□ -0.55
ATG4A-202ENST00000345734 PKNOX2Q96KN3 472 aa11.59□□□□□ -0.55
ATG4A-202ENST00000345734 OVOS2A0A0G2JMS6 1433 aa11.59□□□□□ -0.55
ATG4A-202ENST00000345734 SOS1Q07889 1333 aaPredicted RBP11.59□□□□□ -0.55
ATG4A-202ENST00000345734 NUDT7P0C024 238 aa11.59□□□□□ -0.55
ATG4A-202ENST00000345734 EIF2S2P20042 333 aaKnown RBP11.59□□□□□ -0.55
ATG4A-202ENST00000345734 HDGFL1Q5TGJ6 251 aa11.59□□□□□ -0.55
ATG4A-202ENST00000345734 TYW1BQ6NUM6 668 aa11.59□□□□□ -0.55
ATG4A-202ENST00000345734 SLC4A10Q6U841 1118 aa11.59□□□□□ -0.55
ATG4A-202ENST00000345734 PADI6Q6TGC4 694 aa11.58□□□□□ -0.56
ATG4A-202ENST00000345734 ARID3AQ99856 593 aa11.58□□□□□ -0.56
ATG4A-202ENST00000345734 KDM6AO15550 1401 aaPredicted RBP11.57□□□□□ -0.56
ATG4A-202ENST00000345734 PHKG2P15735 406 aa11.57□□□□□ -0.56
ATG4A-202ENST00000345734 FKBP5Q13451 457 aaPredicted RBP11.57□□□□□ -0.56
ATG4A-202ENST00000345734 ZNF454Q8N9F8 522 aa11.57□□□□□ -0.56
ATG4A-202ENST00000345734 MEIS3Q99687 375 aa11.57□□□□□ -0.56
ATG4A-202ENST00000345734 SPG7Q9UQ90 795 aa11.57□□□□□ -0.56
ATG4A-202ENST00000345734 PKD1L3Q7Z443 1732 aa11.57□□□□□ -0.56
ATG4A-202ENST00000345734 ANP32AP39687 249 aaKnown RBP11.57□□□□□ -0.56
ATG4A-202ENST00000345734 CYP27B1O15528 508 aa11.56□□□□□ -0.56
ATG4A-202ENST00000345734 NUCB1Q02818 461 aa11.56□□□□□ -0.56
ATG4A-202ENST00000345734 PHAXQ9H814 394 aaKnown RBP11.56□□□□□ -0.56
ATG4A-202ENST00000345734 GPCPD1Q9NPB8 672 aa11.56□□□□□ -0.56
ATG4A-202ENST00000345734 COL5A2P05997 1499 aaPredicted RBP11.56□□□□□ -0.56
ATG4A-202ENST00000345734 WDR17Q8IZU2 1322 aa11.56□□□□□ -0.56
ATG4A-202ENST00000345734 CCT4P50991 539 aaKnown RBP11.56□□□□□ -0.56
ATG4A-202ENST00000345734 TOM1L2Q6ZVM7 507 aa11.56□□□□□ -0.56
ATG4A-202ENST00000345734 IFNL2Q8IZJ0 200 aa11.56□□□□□ -0.56
ATG4A-202ENST00000345734 CHPF2Q9P2E5 772 aa11.56□□□□□ -0.56
ATG4A-202ENST00000345734 ROBO1Q9Y6N7 1651 aa11.55□□□□□ -0.56
ATG4A-202ENST00000345734 ATP10DQ9P241 1426 aa11.55□□□□□ -0.56
ATG4A-202ENST00000345734 PRAMEF22A3QJZ6 481 aa11.55□□□□□ -0.56
ATG4A-202ENST00000345734 ANXA1P04083 346 aa11.55□□□□□ -0.56
ATG4A-202ENST00000345734 HOXB7P09629 217 aa11.55□□□□□ -0.56
ATG4A-202ENST00000345734 CLCN1P35523 988 aa11.55□□□□□ -0.56
ATG4A-202ENST00000345734 METTL3Q86U44 580 aaKnown RBP11.55□□□□□ -0.56
ATG4A-202ENST00000345734 LNPKQ9C0E8 428 aa11.55□□□□□ -0.56
ATG4A-202ENST00000345734 SLC39A6Q13433 755 aa11.54□□□□□ -0.56
ATG4A-202ENST00000345734 STRN4Q9NRL3 753 aa11.54□□□□□ -0.56
ATG4A-202ENST00000345734 N4BP2Q86UW6 1770 aaPredicted RBP11.54□□□□□ -0.56
ATG4A-202ENST00000345734 HEG1Q9ULI3 1381 aa11.54□□□□□ -0.56
ATG4A-202ENST00000345734 GIGYF1O75420 1035 aaPredicted RBP11.54□□□□□ -0.56
ATG4A-202ENST00000345734 SSTR3P32745 418 aaPredicted RBP11.54□□□□□ -0.56
ATG4A-202ENST00000345734 ARSIQ5FYB1 569 aa11.54□□□□□ -0.56
ATG4A-202ENST00000345734 C6orf132Q5T0Z8 1188 aa11.54□□□□□ -0.56
ATG4A-202ENST00000345734 ANKRD45Q5TZF3 282 aa11.54□□□□□ -0.56
ATG4A-202ENST00000345734 CEP85Q6P2H3 762 aa11.54□□□□□ -0.56
ATG4A-202ENST00000345734 CHD1LQ86WJ1 897 aa11.54□□□□□ -0.56
ATG4A-202ENST00000345734 NFATC2IPQ8NCF5 419 aa11.54□□□□□ -0.56
ATG4A-202ENST00000345734 GCC1Q96CN9 775 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms