RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 SPON1Q9HCB6 807 aa15.24■□□□□ 0.03
SNCA-202ENST00000345009 DBF4Q9UBU7 674 aaPredicted RBP15.24■□□□□ 0.03
SNCA-202ENST00000345009 CICQ96RK0 1608 aaPredicted RBP15.24■□□□□ 0.03
SNCA-202ENST00000345009 STK31Q9BXU1 1019 aa15.23■□□□□ 0.03
SNCA-202ENST00000345009 DDX21Q9NR30 783 aaKnown RBP eCLIP15.23■□□□□ 0.03
SNCA-202ENST00000345009 ZBED9Q6R2W3 1325 aa15.22■□□□□ 0.03
SNCA-202ENST00000345009 MYH14Q7Z406 1995 aaKnown RBP15.22■□□□□ 0.03
SNCA-202ENST00000345009 ZBTB7AO95365 584 aa15.22■□□□□ 0.03
SNCA-202ENST00000345009 MYL6BP14649 208 aa15.22■□□□□ 0.03
SNCA-202ENST00000345009 POLD1P28340 1107 aa15.22■□□□□ 0.03
SNCA-202ENST00000345009 EXOSC9Q06265 439 aaKnown RBP15.22■□□□□ 0.03
SNCA-202ENST00000345009 NECTIN2Q92692 538 aa15.22■□□□□ 0.03
SNCA-202ENST00000345009 HYPKQ9NX55 129 aa15.22■□□□□ 0.03
SNCA-202ENST00000345009 NARFQ9UHQ1 456 aa15.22■□□□□ 0.03
SNCA-202ENST00000345009 COL5A3P25940 1745 aaPredicted RBP15.22■□□□□ 0.03
SNCA-202ENST00000345009 TJP1Q07157 1748 aa15.22■□□□□ 0.03
SNCA-202ENST00000345009 COL15A1P39059 1388 aa15.22■□□□□ 0.03
SNCA-202ENST00000345009 NBPF26B4DH59 902 aa15.21■□□□□ 0.03
SNCA-202ENST00000345009 NBPF10Q6P3W6 841 aaKnown RBP15.21■□□□□ 0.03
SNCA-202ENST00000345009 KIF6Q6ZMV9 814 aa15.21■□□□□ 0.03
SNCA-202ENST00000345009 NBPF15Q8N660 670 aa15.21■□□□□ 0.03
SNCA-202ENST00000345009 ZNF652Q9Y2D9 606 aa15.21■□□□□ 0.03
SNCA-202ENST00000345009 CT47B1P0C2W7 299 aaPredicted RBP15.2■□□□□ 0.02
SNCA-202ENST00000345009 SMIM5Q71RC9 77 aa15.2■□□□□ 0.02
SNCA-202ENST00000345009 AMIGO3Q86WK7 504 aa15.2■□□□□ 0.02
SNCA-202ENST00000345009 DZIP3Q86Y13 1208 aaKnown RBP15.2■□□□□ 0.02
SNCA-202ENST00000345009 TSPYL6Q8N831 410 aa15.2■□□□□ 0.02
SNCA-202ENST00000345009 ZNF428Q96B54 188 aa15.2■□□□□ 0.02
SNCA-202ENST00000345009 CDCA7LQ96GN5 454 aa15.2■□□□□ 0.02
SNCA-202ENST00000345009 PDGFDQ9GZP0 370 aaPredicted RBP15.2■□□□□ 0.02
SNCA-202ENST00000345009 TBC1D2BQ9UPU7 963 aa15.2■□□□□ 0.02
SNCA-202ENST00000345009 USP42Q9H9J4 1324 aaKnown RBP15.19■□□□□ 0.02
SNCA-202ENST00000345009 UBR3Q6ZT12 1888 aa15.19■□□□□ 0.02
SNCA-202ENST00000345009 RGL2O15211 777 aa15.19■□□□□ 0.02
SNCA-202ENST00000345009 VAMP4O75379 141 aa15.19■□□□□ 0.02
SNCA-202ENST00000345009 PIP4K2AP48426 406 aaPredicted RBP15.19■□□□□ 0.02
SNCA-202ENST00000345009 CLEC4GQ6UXB4 293 aa15.19■□□□□ 0.02
SNCA-202ENST00000345009 TRMT2AQ8IZ69 625 aaKnown RBP15.19■□□□□ 0.02
SNCA-202ENST00000345009 CHPF2Q9P2E5 772 aa15.19■□□□□ 0.02
SNCA-202ENST00000345009 QSER1Q2KHR3 1735 aa15.18■□□□□ 0.02
SNCA-202ENST00000345009 PDIA6Q15084 440 aa15.18■□□□□ 0.02
SNCA-202ENST00000345009 USPL1Q5W0Q7 1092 aa15.18■□□□□ 0.02
SNCA-202ENST00000345009 TSPYL2Q9H2G4 693 aaPredicted RBP15.18■□□□□ 0.02
SNCA-202ENST00000345009 SRCAPQ6ZRS2 3230 aa15.17■□□□□ 0.02
SNCA-202ENST00000345009 ERVV-1B6SEH8 477 aa15.17■□□□□ 0.02
SNCA-202ENST00000345009 DDX58O95786 925 aaKnown RBP15.17■□□□□ 0.02
SNCA-202ENST00000345009 GYS1P13807 737 aa15.17■□□□□ 0.02
SNCA-202ENST00000345009 PPP1R1BQ9UD71 204 aaPredicted RBP15.17■□□□□ 0.02
SNCA-202ENST00000345009 SRP68Q9UHB9 627 aaKnown RBP15.17■□□□□ 0.02
SNCA-202ENST00000345009 AIMP1Q12904 312 aaKnown RBP15.16■□□□□ 0.02
SNCA-202ENST00000345009 MSL1Q68DK7 614 aa15.16■□□□□ 0.02
SNCA-202ENST00000345009 COPS6Q7L5N1 327 aa15.16■□□□□ 0.02
SNCA-202ENST00000345009 LAMB4A4D0S4 1761 aa15.16■□□□□ 0.02
SNCA-202ENST00000345009 CAMTA2O94983 1202 aa15.15■□□□□ 0.02
SNCA-202ENST00000345009 ANXA1P04083 346 aa15.15■□□□□ 0.02
SNCA-202ENST00000345009 PROSER3Q2NL68 480 aa15.15■□□□□ 0.02
SNCA-202ENST00000345009 XAGE3Q8WTP9 111 aa15.15■□□□□ 0.02
SNCA-202ENST00000345009 PARP3Q9Y6F1 533 aa15.15■□□□□ 0.02
SNCA-202ENST00000345009 MAP3K15Q6ZN16 1313 aa15.15■□□□□ 0.02
SNCA-202ENST00000345009 MMP10P09238 476 aa15.14■□□□□ 0.01
SNCA-202ENST00000345009 HSP90AB3PQ58FF7 597 aa15.14■□□□□ 0.01
SNCA-202ENST00000345009 ANKRD13DQ6ZTN6 518 aa15.14■□□□□ 0.01
SNCA-202ENST00000345009 SETDB2Q96T68 719 aa15.14■□□□□ 0.01
SNCA-202ENST00000345009 TTLL7Q6ZT98 887 aa15.13■□□□□ 0.01
SNCA-202ENST00000345009 LRP10Q7Z4F1 713 aa15.13■□□□□ 0.01
SNCA-202ENST00000345009 RIC3Q7Z5B4 369 aa15.13■□□□□ 0.01
SNCA-202ENST00000345009 ZBTB3Q9H5J0 574 aa15.13■□□□□ 0.01
SNCA-202ENST00000345009 TUBGCP6Q96RT7 1819 aa15.13■□□□□ 0.01
SNCA-202ENST00000345009 CASZ1Q86V15 1759 aa15.12■□□□□ 0.01
SNCA-202ENST00000345009 NPHP1O15259 732 aa15.12■□□□□ 0.01
SNCA-202ENST00000345009 PTGER2P43116 358 aa15.12■□□□□ 0.01
SNCA-202ENST00000345009 ALDH1L2Q3SY69 923 aa15.12■□□□□ 0.01
SNCA-202ENST00000345009 GIGYF2Q6Y7W6 1299 aaKnown RBP15.12■□□□□ 0.01
SNCA-202ENST00000345009 PLBD2Q8NHP8 589 aa15.12■□□□□ 0.01
SNCA-202ENST00000345009 YTHDC1Q96MU7 727 aaKnown RBP15.12■□□□□ 0.01
SNCA-202ENST00000345009 TCERG1O14776 1098 aaKnown RBP15.11■□□□□ 0.01
SNCA-202ENST00000345009 TM4SF1P30408 202 aa15.11■□□□□ 0.01
SNCA-202ENST00000345009 NFIXQ14938 502 aa15.11■□□□□ 0.01
SNCA-202ENST00000345009 BICDL1Q6ZP65 573 aa15.11■□□□□ 0.01
SNCA-202ENST00000345009 NIP7Q9Y221 180 aaKnown RBP eCLIP15.11■□□□□ 0.01
SNCA-202ENST00000345009 TBC1D9BQ66K14 1250 aa15.1■□□□□ 0.01
SNCA-202ENST00000345009 SGIP1Q9BQI5 828 aa15.1■□□□□ 0.01
SNCA-202ENST00000345009 PHAXQ9H814 394 aaKnown RBP15.1■□□□□ 0.01
SNCA-202ENST00000345009 BCL2L12Q9HB09 334 aa15.1■□□□□ 0.01
SNCA-202ENST00000345009 GTF2E1P29083 439 aaPredicted RBP15.09■□□□□ 0.01
SNCA-202ENST00000345009 NEXNQ0ZGT2 675 aa15.09■□□□□ 0.01
SNCA-202ENST00000345009 FLIIQ13045 1269 aa15.09■□□□□ 0.01
SNCA-202ENST00000345009 FKBP5Q13451 457 aaPredicted RBP15.09■□□□□ 0.01
SNCA-202ENST00000345009 TCIRG1Q13488 830 aa15.09■□□□□ 0.01
SNCA-202ENST00000345009 HLFQ16534 295 aa15.09■□□□□ 0.01
SNCA-202ENST00000345009 PARP10Q53GL7 1025 aa15.09■□□□□ 0.01
SNCA-202ENST00000345009 KSR2Q6VAB6 950 aa15.09■□□□□ 0.01
SNCA-202ENST00000345009 TPTE2Q6XPS3 522 aa15.09■□□□□ 0.01
SNCA-202ENST00000345009 CARMIL3Q8ND23 1372 aa15.09■□□□□ 0.01
SNCA-202ENST00000345009 CACNA1FO60840 1977 aa15.08■□□□□ 0
SNCA-202ENST00000345009 SERPINB2P05120 415 aa15.08■□□□□ 0
SNCA-202ENST00000345009 NBPF5PQ86XG9 351 aaPredicted RBP15.08■□□□□ 0
SNCA-202ENST00000345009 RASEFQ8IZ41 740 aa15.08■□□□□ 0
SNCA-202ENST00000345009 NYXQ9GZU5 481 aa15.08■□□□□ 0
SNCA-202ENST00000345009 SMC4Q9NTJ3 1288 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms