RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 PPP1R42Q7Z4L9 355 aa26.83■■□□□ 1.89
TRIM28-202ENST00000341753 LIMCH1Q9UPQ0 1083 aa26.83■■□□□ 1.89
TRIM28-202ENST00000341753 SOS1Q07889 1333 aaPredicted RBP26.82■■□□□ 1.88
TRIM28-202ENST00000341753 CASTP20810 708 aaKnown RBP26.82■■□□□ 1.88
TRIM28-202ENST00000341753 PI4K2BQ8TCG2 481 aa26.82■■□□□ 1.88
TRIM28-202ENST00000341753 LSG1Q9H089 658 aaKnown RBP26.82■■□□□ 1.88
TRIM28-202ENST00000341753 HMGN5P82970 282 aaKnown RBP26.81■■□□□ 1.88
TRIM28-202ENST00000341753 ANKLE2Q86XL3 938 aa26.81■■□□□ 1.88
TRIM28-202ENST00000341753 PHAXQ9H814 394 aaKnown RBP26.81■■□□□ 1.88
TRIM28-202ENST00000341753 ANKARQ7Z5J8 1434 aa26.81■■□□□ 1.88
TRIM28-202ENST00000341753 KCNF1Q9H3M0 494 aa26.81■■□□□ 1.88
TRIM28-202ENST00000341753 NWD1Q149M9 1564 aa26.81■■□□□ 1.88
TRIM28-202ENST00000341753 MARF1Q9Y4F3 1742 aaKnown RBP26.81■■□□□ 1.88
TRIM28-202ENST00000341753 NBPF6Q5VWK0 638 aa26.81■■□□□ 1.88
TRIM28-202ENST00000341753 LRRC59Q96AG4 307 aaKnown RBP26.81■■□□□ 1.88
TRIM28-202ENST00000341753 NBPF4Q96M43 638 aa26.81■■□□□ 1.88
TRIM28-202ENST00000341753 KIF3AQ9Y496 699 aa26.81■■□□□ 1.88
TRIM28-202ENST00000341753 PSME1Q06323 249 aa26.8■■□□□ 1.88
TRIM28-202ENST00000341753 RHPN1Q8TCX5 695 aa26.8■■□□□ 1.88
TRIM28-202ENST00000341753 LETM1O95202 739 aaPredicted RBP26.8■■□□□ 1.88
TRIM28-202ENST00000341753 GJB2P29033 226 aa26.8■■□□□ 1.88
TRIM28-202ENST00000341753 FUCA2Q9BTY2 467 aa26.8■■□□□ 1.88
TRIM28-202ENST00000341753 SPTLC3Q9NUV7 552 aa26.8■■□□□ 1.88
TRIM28-202ENST00000341753 ZSCAN21Q9Y5A6 473 aaPredicted RBP26.8■■□□□ 1.88
TRIM28-202ENST00000341753 VPS37CA5D8V6 355 aaPredicted RBP26.79■■□□□ 1.88
TRIM28-202ENST00000341753 PPP4R3BQ5MIZ7 849 aa26.79■■□□□ 1.88
TRIM28-202ENST00000341753 LMOD2Q6P5Q4 547 aa26.79■■□□□ 1.88
TRIM28-202ENST00000341753 BCL2L12Q9HB09 334 aa26.79■■□□□ 1.88
TRIM28-202ENST00000341753 MAP3K5Q99683 1374 aa26.78■■□□□ 1.88
TRIM28-202ENST00000341753 LGR6Q9HBX8 967 aa26.78■■□□□ 1.88
TRIM28-202ENST00000341753 SRGAP3O43295 1099 aa26.78■■□□□ 1.88
TRIM28-202ENST00000341753 SSH3Q8TE77 659 aa26.78■■□□□ 1.88
TRIM28-202ENST00000341753 ATP2B3Q16720 1220 aa26.77■■□□□ 1.88
TRIM28-202ENST00000341753 ADCK5Q3MIX3 580 aa26.77■■□□□ 1.88
TRIM28-202ENST00000341753 ORAI2Q96SN7 254 aa26.77■■□□□ 1.88
TRIM28-202ENST00000341753 GTF2F1P35269 517 aaKnown RBP eCLIP26.77■■□□□ 1.882e-6■■□□□ 14.1
TRIM28-202ENST00000341753 AOX1Q06278 1338 aa26.77■■□□□ 1.88
TRIM28-202ENST00000341753 EIF2S2P20042 333 aaKnown RBP26.76■■□□□ 1.87
TRIM28-202ENST00000341753 TAF7Q15545 349 aaPredicted RBP26.76■■□□□ 1.87
TRIM28-202ENST00000341753 MTMR6Q9Y217 621 aa26.76■■□□□ 1.87
TRIM28-202ENST00000341753 NECAB1Q8N987 351 aa26.75■■□□□ 1.87
TRIM28-202ENST00000341753 KIAA1524Q8TCG1 905 aa26.75■■□□□ 1.87
TRIM28-202ENST00000341753 JAKMIP1Q96N16 626 aaKnown RBP26.75■■□□□ 1.87
TRIM28-202ENST00000341753 KCNQ3O43525 872 aa26.75■■□□□ 1.87
TRIM28-202ENST00000341753 PTH1RQ03431 593 aa26.75■■□□□ 1.87
TRIM28-202ENST00000341753 CNTROBQ8N137 903 aa26.75■■□□□ 1.87
TRIM28-202ENST00000341753 HYPKQ9NX55 129 aa26.75■■□□□ 1.87
TRIM28-202ENST00000341753 SPDYE4A6NLX3 237 aa26.74■■□□□ 1.87
TRIM28-202ENST00000341753 CAMK4Q16566 473 aa26.74■■□□□ 1.87
TRIM28-202ENST00000341753 FAM173BQ6P4H8 233 aa26.74■■□□□ 1.87
TRIM28-202ENST00000341753 RIOK3O14730 519 aaKnown RBP26.74■■□□□ 1.87
TRIM28-202ENST00000341753 NBPF7P0C2Y1 421 aaPredicted RBP26.74■■□□□ 1.87
TRIM28-202ENST00000341753 PRPF40BQ6NWY9 871 aaKnown RBP26.74■■□□□ 1.87
TRIM28-202ENST00000341753 ZSCAN20P17040 1043 aaPredicted RBP26.74■■□□□ 1.87
TRIM28-202ENST00000341753 FERMT3Q86UX7 667 aa26.74■■□□□ 1.87
TRIM28-202ENST00000341753 ATP6V1DQ9Y5K8 247 aa26.74■■□□□ 1.87
TRIM28-202ENST00000341753 ANXA1P04083 346 aa26.73■■□□□ 1.87
TRIM28-202ENST00000341753 PDRG1Q9NUG6 133 aa26.73■■□□□ 1.87
TRIM28-202ENST00000341753 HTATSF1O43719 755 aaKnown RBP26.72■■□□□ 1.87
TRIM28-202ENST00000341753 HDGFL1Q5TGJ6 251 aa26.72■■□□□ 1.87
TRIM28-202ENST00000341753 IP6K1Q92551 441 aa26.72■■□□□ 1.87
TRIM28-202ENST00000341753 ST3GAL1Q11201 340 aa26.71■■□□□ 1.87
TRIM28-202ENST00000341753 RAB11FIP3O75154 756 aa26.71■■□□□ 1.87
TRIM28-202ENST00000341753 COL9A3Q14050 684 aaPredicted RBP26.71■■□□□ 1.87
TRIM28-202ENST00000341753 DIAPH3Q9NSV4 1193 aa26.71■■□□□ 1.87
TRIM28-202ENST00000341753 PTGS1P23219 599 aa26.7■■□□□ 1.87
TRIM28-202ENST00000341753 OS9Q13438 667 aaPredicted RBP26.7■■□□□ 1.87
TRIM28-202ENST00000341753 KIF1BPQ96EK5 621 aa26.7■■□□□ 1.87
TRIM28-202ENST00000341753 DMTNQ08495 405 aa26.7■■□□□ 1.86
TRIM28-202ENST00000341753 POLA2Q14181 598 aa26.69■■□□□ 1.86
TRIM28-202ENST00000341753 MPRIPQ6WCQ1 1025 aa26.69■■□□□ 1.86
TRIM28-202ENST00000341753 EPB41L2O43491 1005 aaKnown RBP26.69■■□□□ 1.86
TRIM28-202ENST00000341753 LUZP1Q86V48 1076 aa26.69■■□□□ 1.86
TRIM28-202ENST00000341753 ME3Q16798 604 aa26.68■■□□□ 1.86
TRIM28-202ENST00000341753 CCDC192P0DO97 292 aa26.68■■□□□ 1.86
TRIM28-202ENST00000341753 CKAP2LQ8IYA6 745 aa26.68■■□□□ 1.86
TRIM28-202ENST00000341753 PDCL2Q8N4E4 241 aa26.68■■□□□ 1.86
TRIM28-202ENST00000341753 LIG1P18858 919 aa26.67■■□□□ 1.86
TRIM28-202ENST00000341753 TTC6Q86TZ1 520 aa26.67■■□□□ 1.86
TRIM28-202ENST00000341753 LTN1O94822 1766 aa26.67■■□□□ 1.86
TRIM28-202ENST00000341753 CHAF1AQ13111 956 aaPredicted RBP26.67■■□□□ 1.86
TRIM28-202ENST00000341753 FAM208AQ9UK61 1670 aaKnown RBP26.67■■□□□ 1.86
TRIM28-202ENST00000341753 TCEANC2Q96MN5 208 aa26.67■■□□□ 1.86
TRIM28-202ENST00000341753 U2AF2P26368 475 aaKnown RBP eCLIP26.66■■□□□ 1.867e-13■■■□□ 18.7
TRIM28-202ENST00000341753 LRRC37A3O60309 1634 aa26.66■■□□□ 1.86
TRIM28-202ENST00000341753 CHD2O14647 1828 aaKnown RBP26.65■■□□□ 1.86
TRIM28-202ENST00000341753 LRMPQ12912 555 aa26.65■■□□□ 1.86
TRIM28-202ENST00000341753 CDC37L1Q7L3B6 337 aa26.65■■□□□ 1.86
TRIM28-202ENST00000341753 BCL11BQ9C0K0 894 aaPredicted RBP26.65■■□□□ 1.86
TRIM28-202ENST00000341753 CYP46A1Q9Y6A2 500 aa26.65■■□□□ 1.86
TRIM28-202ENST00000341753 ZNF530Q6P9A1 599 aaPredicted RBP26.64■■□□□ 1.85
TRIM28-202ENST00000341753 CHPF2Q9P2E5 772 aa26.64■■□□□ 1.85
TRIM28-202ENST00000341753 VPS53Q5VIR6 699 aa26.63■■□□□ 1.85
TRIM28-202ENST00000341753 LARP1BQ659C4 914 aaKnown RBP26.63■■□□□ 1.85
TRIM28-202ENST00000341753 NRBP1Q9UHY1 535 aa26.63■■□□□ 1.85
TRIM28-202ENST00000341753 TPCN1Q9ULQ1 816 aa26.63■■□□□ 1.85
TRIM28-202ENST00000341753 MRVI1Q9Y6F6 885 aa26.63■■□□□ 1.85
TRIM28-202ENST00000341753 RGPD2P0DJD1 1756 aa26.63■■□□□ 1.85
TRIM28-202ENST00000341753 TYRO3Q06418 890 aa26.63■■□□□ 1.85
TRIM28-202ENST00000341753 TFIP11Q9UBB9 837 aaKnown RBP26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms