RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 PROSER3Q2NL68 480 aa20.61■□□□□ 0.89
CLN3-201ENST00000333496 TTLL7Q6ZT98 887 aa20.61■□□□□ 0.89
CLN3-201ENST00000333496 ANXA1P04083 346 aa20.6■□□□□ 0.89
CLN3-201ENST00000333496 NCBP3Q53F19 620 aaKnown RBP20.6■□□□□ 0.89
CLN3-201ENST00000333496 NECTIN2Q92692 538 aa20.6■□□□□ 0.89
CLN3-201ENST00000333496 DLEC1Q9Y238 1755 aa20.6■□□□□ 0.89
CLN3-201ENST00000333496 CARMIL3Q8ND23 1372 aa20.6■□□□□ 0.89
CLN3-201ENST00000333496 SETDB2Q96T68 719 aa20.6■□□□□ 0.89
CLN3-201ENST00000333496 ARFGEF1Q9Y6D6 1849 aa20.59■□□□□ 0.89
CLN3-201ENST00000333496 RGL2O15211 777 aa20.59■□□□□ 0.89
CLN3-201ENST00000333496 MAP3K15Q6ZN16 1313 aa20.58■□□□□ 0.89
CLN3-201ENST00000333496 HOXB7P09629 217 aa20.58■□□□□ 0.89
CLN3-201ENST00000333496 DUSP27Q5VZP5 1158 aa20.58■□□□□ 0.89
CLN3-201ENST00000333496 ZNF652Q9Y2D9 606 aa20.58■□□□□ 0.89
CLN3-201ENST00000333496 ERVV-1B6SEH8 477 aa20.57■□□□□ 0.88
CLN3-201ENST00000333496 CHRNA5P30532 468 aa20.57■□□□□ 0.88
CLN3-201ENST00000333496 PRR5LQ6MZQ0 368 aa20.57■□□□□ 0.88
CLN3-201ENST00000333496 SALL2Q9Y467 1007 aaPredicted RBP20.57■□□□□ 0.88
CLN3-201ENST00000333496 GRIN3BO60391 1043 aa20.56■□□□□ 0.88
CLN3-201ENST00000333496 YY1P25490 414 aa20.56■□□□□ 0.88
CLN3-201ENST00000333496 HDGFL1Q5TGJ6 251 aa20.56■□□□□ 0.88
CLN3-201ENST00000333496 CCDC24Q8N4L8 307 aa20.56■□□□□ 0.88
CLN3-201ENST00000333496 ZBTB3Q9H5J0 574 aa20.56■□□□□ 0.88
CLN3-201ENST00000333496 DDX21Q9NR30 783 aaKnown RBP eCLIP20.56■□□□□ 0.88
CLN3-201ENST00000333496 NIP7Q9Y221 180 aaKnown RBP eCLIP20.56■□□□□ 0.88
CLN3-201ENST00000333496 COL11A2P13942 1736 aaPredicted RBP20.55■□□□□ 0.88
CLN3-201ENST00000333496 KIF6Q6ZMV9 814 aa20.55■□□□□ 0.88
CLN3-201ENST00000333496 C8orf58Q8NAV2 365 aa20.55■□□□□ 0.88
CLN3-201ENST00000333496 CHPF2Q9P2E5 772 aa20.55■□□□□ 0.88
CLN3-201ENST00000333496 ANKRD36CQ5JPF3 1778 aa20.55■□□□□ 0.88
CLN3-201ENST00000333496 ELL2O00472 640 aaPredicted RBP20.54■□□□□ 0.88
CLN3-201ENST00000333496 TSR2Q969E8 191 aaKnown RBP20.54■□□□□ 0.88
CLN3-201ENST00000333496 BCS1LQ9Y276 419 aa20.53■□□□□ 0.88
CLN3-201ENST00000333496 IL16Q14005 1332 aa20.53■□□□□ 0.88
CLN3-201ENST00000333496 ATP10DQ9P241 1426 aa20.53■□□□□ 0.88
CLN3-201ENST00000333496 DIEXFQ68CQ4 756 aaKnown RBP20.53■□□□□ 0.88
CLN3-201ENST00000333496 GIGYF2Q6Y7W6 1299 aaKnown RBP20.53■□□□□ 0.88
CLN3-201ENST00000333496 COPS6Q7L5N1 327 aa20.53■□□□□ 0.88
CLN3-201ENST00000333496 CNBD1Q8NA66 436 aa20.53■□□□□ 0.88
CLN3-201ENST00000333496 PIM2Q9P1W9 311 aa20.53■□□□□ 0.88
CLN3-201ENST00000333496 TSPYL6Q8N831 410 aa20.52■□□□□ 0.88
CLN3-201ENST00000333496 XAGE3Q8WTP9 111 aa20.52■□□□□ 0.88
CLN3-201ENST00000333496 BRIP1Q9BX63 1249 aa20.52■□□□□ 0.88
CLN3-201ENST00000333496 CACNA1SQ13698 1873 aa20.51■□□□□ 0.87
CLN3-201ENST00000333496 CCER2I3L3R5 266 aa20.51■□□□□ 0.87
CLN3-201ENST00000333496 AIMP1Q12904 312 aaKnown RBP20.51■□□□□ 0.87
CLN3-201ENST00000333496 NBPF5PQ86XG9 351 aaPredicted RBP20.51■□□□□ 0.87
CLN3-201ENST00000333496 WDR63Q8IWG1 891 aa20.51■□□□□ 0.87
CLN3-201ENST00000333496 DBF4Q9UBU7 674 aaPredicted RBP20.51■□□□□ 0.87
CLN3-201ENST00000333496 UBN2Q6ZU65 1347 aa20.5■□□□□ 0.87
CLN3-201ENST00000333496 FAM177BA6PVY3 158 aa20.49■□□□□ 0.87
CLN3-201ENST00000333496 C2CD5Q86YS7 1000 aa20.49■□□□□ 0.87
CLN3-201ENST00000333496 ZNF34Q8IZ26 560 aa20.49■□□□□ 0.87
CLN3-201ENST00000333496 GPTP24298 496 aa20.49■□□□□ 0.87
CLN3-201ENST00000333496 ST5P78524 1137 aa20.49■□□□□ 0.87
CLN3-201ENST00000333496 TPTE2Q6XPS3 522 aa20.49■□□□□ 0.87
CLN3-201ENST00000333496 SPINK5Q9NQ38 1064 aaPredicted RBP20.49■□□□□ 0.87
CLN3-201ENST00000333496 ARFGEF2Q9Y6D5 1785 aa20.48■□□□□ 0.87
CLN3-201ENST00000333496 H0YIN7 160 aa20.48■□□□□ 0.87
CLN3-201ENST00000333496 NPHP1O15259 732 aa20.48■□□□□ 0.87
CLN3-201ENST00000333496 PDE6BP35913 854 aa20.48■□□□□ 0.87
CLN3-201ENST00000333496 DALRD3Q5D0E6 543 aaKnown RBP20.48■□□□□ 0.87
CLN3-201ENST00000333496 TNRC6CQ9HCJ0 1690 aaKnown RBP20.47■□□□□ 0.87
CLN3-201ENST00000333496 FANCIQ9NVI1 1328 aa20.47■□□□□ 0.87
CLN3-201ENST00000333496 SUSD4Q5VX71 490 aa20.46■□□□□ 0.87
CLN3-201ENST00000333496 HYPKQ9NX55 129 aa20.46■□□□□ 0.87
CLN3-201ENST00000333496 SLX4Q8IY92 1834 aa20.46■□□□□ 0.87
CLN3-201ENST00000333496 SBF1O95248 1867 aa20.46■□□□□ 0.87
CLN3-201ENST00000333496 CACNA1FO60840 1977 aa20.46■□□□□ 0.87
CLN3-201ENST00000333496 ZNF521Q96K83 1311 aa20.45■□□□□ 0.86
CLN3-201ENST00000333496 NUTM1Q86Y26 1132 aa20.45■□□□□ 0.86
CLN3-201ENST00000333496 PHAXQ9H814 394 aaKnown RBP20.45■□□□□ 0.86
CLN3-201ENST00000333496 PDZRN3Q9UPQ7 1066 aa20.45■□□□□ 0.86
CLN3-201ENST00000333496 ABCC12Q96J65 1359 aa20.44■□□□□ 0.86
CLN3-201ENST00000333496 IBTKQ9P2D0 1353 aaPredicted RBP20.44■□□□□ 0.86
CLN3-201ENST00000333496 KLRG2A4D1S0 409 aaPredicted RBP20.44■□□□□ 0.86
CLN3-201ENST00000333496 SRGNP10124 158 aa20.44■□□□□ 0.86
CLN3-201ENST00000333496 TWISTNBQ3B726 338 aaPredicted RBP20.44■□□□□ 0.86
CLN3-201ENST00000333496 ANKRD13DQ6ZTN6 518 aa20.44■□□□□ 0.86
CLN3-201ENST00000333496 TTLL6Q8N841 843 aa20.44■□□□□ 0.86
CLN3-201ENST00000333496 PLBD2Q8NHP8 589 aa20.44■□□□□ 0.86
CLN3-201ENST00000333496 NYXQ9GZU5 481 aa20.44■□□□□ 0.86
CLN3-201ENST00000333496 CCDC88AQ3V6T2 1871 aa20.43■□□□□ 0.86
CLN3-201ENST00000333496 NTSR2O95665 410 aa20.43■□□□□ 0.86
CLN3-201ENST00000333496 TCIRG1Q13488 830 aa20.43■□□□□ 0.86
CLN3-201ENST00000333496 ERFEQ4G0M1 354 aa20.43■□□□□ 0.86
CLN3-201ENST00000333496 CCDC30Q5VVM6 783 aa20.43■□□□□ 0.86
CLN3-201ENST00000333496 ARHGAP27Q6ZUM4 889 aa20.43■□□□□ 0.86
CLN3-201ENST00000333496 ZNF622Q969S3 477 aaKnown RBP eCLIP20.43■□□□□ 0.86
CLN3-201ENST00000333496 MIER1Q8N108 512 aa20.42■□□□□ 0.86
CLN3-201ENST00000333496 GTF2E1P29083 439 aaPredicted RBP20.42■□□□□ 0.86
CLN3-201ENST00000333496 PARP10Q53GL7 1025 aa20.42■□□□□ 0.86
CLN3-201ENST00000333496 HSP90AB3PQ58FF7 597 aa20.42■□□□□ 0.86
CLN3-201ENST00000333496 LAMB2P55268 1798 aa20.41■□□□□ 0.86
CLN3-201ENST00000333496 EXOSC9Q06265 439 aaKnown RBP20.41■□□□□ 0.86
CLN3-201ENST00000333496 PPP1R42Q7Z4L9 355 aa20.41■□□□□ 0.86
CLN3-201ENST00000333496 NLRP10Q86W26 655 aa20.41■□□□□ 0.86
CLN3-201ENST00000333496 ZNF784Q8NCA9 323 aaPredicted RBP20.41■□□□□ 0.86
CLN3-201ENST00000333496 FER1L6Q2WGJ9 1857 aa20.4■□□□□ 0.86
CLN3-201ENST00000333496 TCERG1O14776 1098 aaKnown RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms