RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 KLHL34Q8N239 644 aa17.43■□□□□ 0.38
SSBP3-201ENST00000326956 JARID2Q92833 1246 aaPredicted RBP17.43■□□□□ 0.38
SSBP3-201ENST00000326956 PRDM10Q9NQV6 1147 aa17.43■□□□□ 0.38
SSBP3-201ENST00000326956 TUBGCP6Q96RT7 1819 aa17.43■□□□□ 0.38
SSBP3-201ENST00000326956 AGLP35573 1532 aa17.43■□□□□ 0.38
SSBP3-201ENST00000326956 PXDNLA1KZ92 1463 aa17.43■□□□□ 0.38
SSBP3-201ENST00000326956 RIMS1Q86UR5 1692 aaKnown RBP17.43■□□□□ 0.38
SSBP3-201ENST00000326956 LARGE1O95461 756 aa17.43■□□□□ 0.38
SSBP3-201ENST00000326956 TTC41PQ6P2S7 1318 aa17.42■□□□□ 0.38
SSBP3-201ENST00000326956 NBPF7P0C2Y1 421 aaPredicted RBP17.42■□□□□ 0.38
SSBP3-201ENST00000326956 KRT85P78386 507 aa17.42■□□□□ 0.38
SSBP3-201ENST00000326956 LARP1BQ659C4 914 aaKnown RBP17.42■□□□□ 0.38
SSBP3-201ENST00000326956 DTNBO60941 627 aa17.42■□□□□ 0.38
SSBP3-201ENST00000326956 IFIT2P09913 472 aaKnown RBP17.42■□□□□ 0.38
SSBP3-201ENST00000326956 GTF2F1P35269 517 aaKnown RBP eCLIP17.42■□□□□ 0.381e-6■□□□□ 8.9
SSBP3-201ENST00000326956 DNAAF4Q8WXU2 420 aa17.42■□□□□ 0.38
SSBP3-201ENST00000326956 DRC7Q8IY82 874 aa17.41■□□□□ 0.38
SSBP3-201ENST00000326956 CEP170BQ9Y4F5 1589 aaPredicted RBP17.41■□□□□ 0.38
SSBP3-201ENST00000326956 PI4KAP2A4QPH2 592 aa17.41■□□□□ 0.38
SSBP3-201ENST00000326956 MAP3K11Q16584 847 aa17.41■□□□□ 0.38
SSBP3-201ENST00000326956 PI4KAP1Q8N8J0 262 aa17.41■□□□□ 0.38
SSBP3-201ENST00000326956 DDX54Q8TDD1 881 aaKnown RBP17.41■□□□□ 0.38
SSBP3-201ENST00000326956 FUCA2Q9BTY2 467 aa17.41■□□□□ 0.38
SSBP3-201ENST00000326956 NUP62CLQ9H1M0 184 aa17.41■□□□□ 0.38
SSBP3-201ENST00000326956 TSPOAP1O95153 1857 aa17.4■□□□□ 0.38
SSBP3-201ENST00000326956 CACNA1FO60840 1977 aa17.4■□□□□ 0.38
SSBP3-201ENST00000326956 XRN1Q8IZH2 1706 aaKnown RBP17.4■□□□□ 0.38
SSBP3-201ENST00000326956 FAM177BA6PVY3 158 aa17.4■□□□□ 0.38
SSBP3-201ENST00000326956 NUTM2GQ5VZR2 741 aa17.4■□□□□ 0.38
SSBP3-201ENST00000326956 KIAA1524Q8TCG1 905 aa17.4■□□□□ 0.38
SSBP3-201ENST00000326956 ECHDC1Q9NTX5 307 aa17.4■□□□□ 0.38
SSBP3-201ENST00000326956 PDCP20941 246 aa17.4■□□□□ 0.38
SSBP3-201ENST00000326956 PTH1RQ03431 593 aa17.4■□□□□ 0.38
SSBP3-201ENST00000326956 NECAB1Q8N987 351 aa17.4■□□□□ 0.38
SSBP3-201ENST00000326956 SLC26A8Q96RN1 970 aa17.4■□□□□ 0.38
SSBP3-201ENST00000326956 TM6SF1Q9BZW5 370 aa17.4■□□□□ 0.38
SSBP3-201ENST00000326956 TMEM2Q9UHN6 1383 aa17.4■□□□□ 0.38
SSBP3-201ENST00000326956 PDIA4P13667 645 aaKnown RBP17.39■□□□□ 0.37
SSBP3-201ENST00000326956 ADCK5Q3MIX3 580 aa17.39■□□□□ 0.37
SSBP3-201ENST00000326956 FERMT3Q86UX7 667 aa17.39■□□□□ 0.37
SSBP3-201ENST00000326956 FAM200AQ8TCP9 573 aa17.39■□□□□ 0.37
SSBP3-201ENST00000326956 ZSWIM6Q9HCJ5 1215 aa17.39■□□□□ 0.37
SSBP3-201ENST00000326956 TNRQ92752 1358 aa17.39■□□□□ 0.37
SSBP3-201ENST00000326956 C9orf78Q9NZ63 289 aaPredicted RBP17.39■□□□□ 0.37
SSBP3-201ENST00000326956 FAM208AQ9UK61 1670 aaKnown RBP17.39■□□□□ 0.37
SSBP3-201ENST00000326956 PSMA5P28066 241 aa17.38■□□□□ 0.37
SSBP3-201ENST00000326956 CAMK4Q16566 473 aa17.38■□□□□ 0.37
SSBP3-201ENST00000326956 PPP4R3BQ5MIZ7 849 aa17.38■□□□□ 0.37
SSBP3-201ENST00000326956 CHPF2Q9P2E5 772 aa17.38■□□□□ 0.37
SSBP3-201ENST00000326956 PRDM4Q9UKN5 801 aa17.38■□□□□ 0.37
SSBP3-201ENST00000326956 PYCARDQ9ULZ3 195 aa17.38■□□□□ 0.37
SSBP3-201ENST00000326956 HOXC9P31274 260 aa17.38■□□□□ 0.37
SSBP3-201ENST00000326956 C14orf37Q86TY3 774 aa17.38■□□□□ 0.37
SSBP3-201ENST00000326956 ZNF710Q8N1W2 664 aa17.38■□□□□ 0.37
SSBP3-201ENST00000326956 DIP2BQ9P265 1576 aa17.38■□□□□ 0.37
SSBP3-201ENST00000326956 NALCNQ8IZF0 1738 aa17.38■□□□□ 0.37
SSBP3-201ENST00000326956 CBX1P83916 185 aa17.37■□□□□ 0.37
SSBP3-201ENST00000326956 ME3Q16798 604 aa17.37■□□□□ 0.37
SSBP3-201ENST00000326956 ERC1Q8IUD2 1116 aa17.37■□□□□ 0.37
SSBP3-201ENST00000326956 PDCL2Q8N4E4 241 aa17.37■□□□□ 0.37
SSBP3-201ENST00000326956 TNMDQ9H2S6 317 aa17.37■□□□□ 0.37
SSBP3-201ENST00000326956 BCL2L12Q9HB09 334 aa17.37■□□□□ 0.37
SSBP3-201ENST00000326956 EVI5LQ96CN4 794 aa17.37■□□□□ 0.37
SSBP3-201ENST00000326956 HDAC5Q9UQL6 1122 aa17.37■□□□□ 0.37
SSBP3-201ENST00000326956 BEND3Q5T5X7 828 aa17.37■□□□□ 0.37
SSBP3-201ENST00000326956 RBM8AQ9Y5S9 174 aaKnown RBP17.37■□□□□ 0.37
SSBP3-201ENST00000326956 TYRO3Q06418 890 aa17.36■□□□□ 0.37
SSBP3-201ENST00000326956 USHBP1Q8N6Y0 703 aa17.36■□□□□ 0.37
SSBP3-201ENST00000326956 CCDC171Q6TFL3 1326 aa17.36■□□□□ 0.37
SSBP3-201ENST00000326956 FMN2Q9NZ56 1722 aa17.36■□□□□ 0.37
SSBP3-201ENST00000326956 HIP1O00291 1037 aa17.36■□□□□ 0.37
SSBP3-201ENST00000326956 RIOK3O14730 519 aaKnown RBP17.36■□□□□ 0.37
SSBP3-201ENST00000326956 AP5Z1O43299 807 aa17.36■□□□□ 0.37
SSBP3-201ENST00000326956 RNF20Q5VTR2 975 aa17.36■□□□□ 0.37
SSBP3-201ENST00000326956 AACSQ86V21 672 aa17.36■□□□□ 0.37
SSBP3-201ENST00000326956 KCNF1Q9H3M0 494 aa17.36■□□□□ 0.37
SSBP3-201ENST00000326956 TTC6Q86TZ1 520 aa17.35■□□□□ 0.37
SSBP3-201ENST00000326956 USP42Q9H9J4 1324 aaKnown RBP17.35■□□□□ 0.37
SSBP3-201ENST00000326956 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.35■□□□□ 0.37
SSBP3-201ENST00000326956 ANXA1P04083 346 aa17.35■□□□□ 0.37
SSBP3-201ENST00000326956 TEFQ10587 303 aa17.35■□□□□ 0.37
SSBP3-201ENST00000326956 ANKRD1Q15327 319 aa17.35■□□□□ 0.37
SSBP3-201ENST00000326956 CREB3L3Q68CJ9 461 aa17.35■□□□□ 0.37
SSBP3-201ENST00000326956 CKAP2LQ8IYA6 745 aa17.35■□□□□ 0.37
SSBP3-201ENST00000326956 TRIM5Q9C035 493 aa17.35■□□□□ 0.37
SSBP3-201ENST00000326956 SCAND2PQ9GZW5 306 aaPredicted RBP17.35■□□□□ 0.37
SSBP3-201ENST00000326956 AMOTL2Q9Y2J4 779 aa17.35■□□□□ 0.37
SSBP3-201ENST00000326956 EID1Q9Y6B2 187 aa17.35■□□□□ 0.37
SSBP3-201ENST00000326956 PTGS1P23219 599 aa17.34■□□□□ 0.37
SSBP3-201ENST00000326956 BLOC1S2Q6QNY1 142 aa17.34■□□□□ 0.37
SSBP3-201ENST00000326956 SPATA32Q96LK8 384 aa17.34■□□□□ 0.37
SSBP3-201ENST00000326956 ADAMTS13Q76LX8 1427 aa17.34■□□□□ 0.37
SSBP3-201ENST00000326956 LUZP1Q86V48 1076 aa17.34■□□□□ 0.37
SSBP3-201ENST00000326956 TPCN1Q9ULQ1 816 aa17.34■□□□□ 0.37
SSBP3-201ENST00000326956 EIF4A1P60842 406 aaKnown RBP17.34■□□□□ 0.37
SSBP3-201ENST00000326956 FAM173BQ6P4H8 233 aa17.34■□□□□ 0.37
SSBP3-201ENST00000326956 CDC37L1Q7L3B6 337 aa17.34■□□□□ 0.37
SSBP3-201ENST00000326956 ABTB2Q8N961 1025 aa17.34■□□□□ 0.37
SSBP3-201ENST00000326956 DACT1Q9NYF0 836 aa17.34■□□□□ 0.37
SSBP3-201ENST00000326956 LIG1P18858 919 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 1027 ms